EWM25270.1, cds5403 (CDS) Nannochloropsis gaditana

Overview
NameEWM25270.1
Unique Namecds5403
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:948879..949200 +
Alignment locationCM002465.1:949337..949440 +
Alignment locationCM002465.1:949588..949653 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25270.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100473g3.7773.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:948879..949200 +
CM002465.1supercontigCM002465.1:949337..949440 +
CM002465.1supercontigCM002465.1:949588..949653 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM25270.1 vs. NCBI_GenBank
Match: gi|585107000|gb|EWM25270.1| (hypothetical protein Naga_100473g3 [Nannochloropsis gaditana])

HSP 1 Score: 340.887 bits (873), Expect = 8.904e-119
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 0 
Query:    1 MYIKDSTAYFKNDHTFETSKTEERHQKQMERRDIDPNKLAVPEGNPVGERNDEGGANRLERLNEYVQEGNYYQARQEYIAVLEHKNHGAHLKTPTSLGRPSTCSRQTGGSFPAPTREPSGNIHDEYHHNTAETVQNRQKVPRGKDQEPSVSPRRRCPCPEKKV 163
            MYIKDSTAYFKNDHTFETSKTEERHQKQMERRDIDPNKLAVPEGNPVGERNDEGGANRLERLNEYVQEGNYYQARQEYIAVLEHKNHGAHLKTPTSLGRPSTCSRQTGGSFPAPTREPSGNIHDEYHHNTAETVQNRQKVPRGKDQEPSVSPRRRCPCPEKKV
Sbjct:    1 MYIKDSTAYFKNDHTFETSKTEERHQKQMERRDIDPNKLAVPEGNPVGERNDEGGANRLERLNEYVQEGNYYQARQEYIAVLEHKNHGAHLKTPTSLGRPSTCSRQTGGSFPAPTREPSGNIHDEYHHNTAETVQNRQKVPRGKDQEPSVSPRRRCPCPEKKV 163
[Close]
BLAST of EWM25270.1 vs. NCBI_GenBank
Match: gi|585107001|gb|EWM25271.1| (hypothetical protein Naga_100473g3 [Nannochloropsis gaditana])

HSP 1 Score: 227.639 bits (579), Expect = 1.143e-74
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0 
Query:    1 MYIKDSTAYFKNDHTFETSKTEERHQKQMERRDIDPNKLAVPEGNPVGERNDEGGANRLERLNEYVQEGNYYQARQEYIAVLEHKNHGAHLKTPTSLGRPSTCSRQTG 108
            MYIKDSTAYFKNDHTFETSKTEERHQKQMERRDIDPNKLAVPEGNPVGERNDEGGANRLERLNEYVQEGNYYQARQEYIAVLEHKNHGAHLKTPTSLGRPSTCSRQTG
Sbjct:    1 MYIKDSTAYFKNDHTFETSKTEERHQKQMERRDIDPNKLAVPEGNPVGERNDEGGANRLERLNEYVQEGNYYQARQEYIAVLEHKNHGAHLKTPTSLGRPSTCSRQTG 108
The following BLAST results are available for this feature:
BLAST of EWM25270.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585107000|gb|EWM25270.1|8.904e-119100.00hypothetical protein Naga_100473g3 [Nannochloropsi... [more]
gi|585107001|gb|EWM25271.1|1.143e-74100.00hypothetical protein Naga_100473g3 [Nannochloropsi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5416rna5416Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications