rna5414, rna5414 (mRNA) Nannochloropsis gaditana

Overview
Namerna5414
Unique Namerna5414
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length222
Alignment locationCM002465.1:945444..947533 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100473g2.7775.mrna
Orig protein idgnl|cribi|Naga_100473g2.7775
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:945444..947533 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100473g2gene5236Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5414rna5414-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25272.1cds5401Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5414 ID=rna5414|Name=rna5414|organism=Nannochloropsis gaditana|type=mRNA|length=222bp
ATGCGCGGAGAGGAGGGAACGCTGCCCTTCACCTTCATCCTCGACGACCC
CGCCGGCAACAGCCACGTTGAGAACCCAACCGCCCCTCGCCTCGACCCCA
AACTCCGGGTAGTTTTCTACGAGCGGACGCCGAGTCAGGACTTGATGGTG
GGGCTCCAGCCCACCGAGGAGGCGAGGACGGCGGGGAGGGTGGATGACGC
CAAGCCAGAGCATAAGGCGTAA
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protein sequence of rna5414

>rna5414-protein ID=rna5414-protein|Name=rna5414|organism=Nannochloropsis gaditana|type=polypeptide|length=157bp
MGVPWRGNSAYAACRNKEQRNRYSSEFPSARRISLAAHERRTLPEAEKLL
VMVSSLPSKREHFKGRKLRHRKRSSEPLSLDISNKTAVFQHDCVQTYSKS
GADKADIDGKINLLGLEGQALPPLCHEIGTIMSTCATEMQETFMWVRDAA
RHGRKKL
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mRNA from alignment at CM002465.1:945444..947533+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5414 ID=rna5414|Name=rna5414|organism=Nannochloropsis gaditana|type=mRNA|length=2090bp|location=Sequence derived from alignment at CM002465.1:945444..947533+ (Nannochloropsis gaditana)
ATGGGAGTTCCATGGAGAGGCAATAGTGCGTACGCTGCATGCCGTAATAA
AGAACAACGAAACAGATATTCGTCAGGTCCGATGATATTCTTGGGTTCGA
ATCGCCGCCTTGCAGTAGTTGGCCCAATTTCGGGTTGAACATACTACTGG
ATCAAAGAGGATGCCGCCTCGGATTCACTTTTGCGAACATACGTGGCCGG
GTAAATCGTTTTCATATTTGTCCGATGCTTTTTAAATTTATGCCCGCTTT
TGCCCGAATTTCTTCGTAAAGATAAGGAGTTCGGTGCATAACTGTCAAAC
TTAAGAATTTATTCGACAGCATCTATCTCATCTTTGTAAGATGTATAATA
TCCATCTTTCCAGCAATAATGATGATAATTATTCGTTTACTTCTCCTACG
CAACGGCAAATAGAAACCCACATGTTATCTGATCGAAATCAGATATCTCG
TTGATTTTTTATGGAAAATTTCGATGTCTTCCATCGAAATTACATACATC
TTTTCTAAATATTCCAAGCGCCCAAATCTTTTATGAAAGTTCGAGCAGAG
ATTACTTGATGCTTTATCGAGGAACGAAGGCCCTATATCCCTCCTTCGAT
CGCCACTTACCTTCCGTAAATTTAttggctttccttccgtctTTTCACGA
CCACTTAGCTTTTTGTACCATACACACTCTATTTCACCCCGTCAATATTA
AGAATCTTAAGTCTGTCTGTATAACCAAGGCTTATAGATCTTGAGAGACA
TCAAATTCCGCATATGTAATAATGCTATTTAGCTCGTTATTCACTAAAGC
AAAAAGACTTGAAACGTCTCTGCCTTTTAAAGTGATAACCTTGGGGTTTC
CCATTTGTTGAGCTTCTTTATTATCTCACGACTCTAAATACTGAAGGCCA
CAAGTCAGTCTTGCCACCTCCTTCAAACATCCTTCAACAAACATCCCACC
CCCCCAACGTCCAACGTCTTCCGACAAACACCGTCAGCATACCGTGAGCC
AAAAAGCTGATTGACGGATGTAACCCAGGACATGGTCAACGGTCTTTAAC
TAGCCTTACATAAGGCTCTGAAAGGCAATGGAAACAAACAACCGTGCTGA
GAATTgcgtccttctcggcctTTACCTTACGGCTGACGTGACACGCTTTT
CCCGGCGCTAGTCCCGGGCGAGATGCGGGTTCCGGACTTTCGTCCACACG
AATCCAAATACACGAACACATGCGTTATTCGACGCTCTATGTAAGCTATT
TAAGTAAATTTTGTCTTCTTCCAAATTTTGTCTTCTTCCGACAATCTTGT
ATAGAAAGGCCGCGAACGACGCGCTGTTTAAAGAATCCACCGCTGTGGCG
GCCATGATCTGAGGGGTGCTGTATTGTATGCCGTCATCAAAAATGAAGAA
TTCCCTTCCGCGGTATGAACAATATTCGATAGCATCTCAAGCCAGCGAAG
AGTTGATTAATATCTCAACACAGCTTTACCATGTAATATTGCCAGAGAAG
GATAAGCCTAGCGGCCCACGAGAGACGTACTTTACCGGAGGTAAGTGCGA
AAATTCCGTTATACATAtcggccatggcggccaaTCAAACAGAGCCAGCT
ATAGGCCATGAGAATATTCATCTCTTTGGGGGGTTTTACGTTAATTGTAG
GCAGAAAAACTGCTTGTCATGGTGTCAAGCCTACCATCCAAGAGGGAGCA
CTTCAAAGGCCGTAAACTCCGGCACCGCAAGAGAAGCAGCGAGCCTCTCT
CGCTGGACATCTCAAATAAAACCGTACGTTTTGAATGTTGGAATTTGTCG
TGTTTTGCAATTTCACCTACCTCCAATGTCTTGCGCGGTCATTTTGTCAC
TCATACTCACCTTGTCGCCTTCAGGCTGTCTTCCAGCATGACTGCGTACA
AACATATTCCAAGTCAGGAGCAGATAAAGCTGATATTGACGGAAAGATCA
ACTTATTGGGACTGGAGGGTCAAGCGCTTCCACCCCTTTGTCATGAAATA
GGTACAATCATGTCCACATGTGCGACAGAAATGCAAGAAACCTTCATGTG
GGTCCGGGATGCTGCCCGACACGGAAGAAAGAAGCTGTAA
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Coding sequence (CDS) from alignment at CM002465.1:945444..947533+

>rna5414 ID=rna5414|Name=rna5414|organism=Nannochloropsis gaditana|type=CDS|length=2370bp|location=Sequence derived from alignment at CM002465.1:945444..947533+ (Nannochloropsis gaditana)
ATGGGAGTTCCATGGAGAGGCAATAGTGCGTACGCTGCATGCCGTAATAA
AGAACAACGAAACAGATATTCGTCAGAATTCCCTTCCGCGAGAAGGATAA
GCCTAGCGGCCCACGAGAGACGTACTTTACCGGAGGCAGAAAAACTGCTT
GTCATGGTGTCAAGCCTACCATCCAAGAGGGAGCACTTCAAAGGCCGTAA
ACTCCGGCACCGCAAGAGAAGCAGCGAGCCTCTCTCGCTGGACATCTCAA
ATAAAACCGCTGTCTTCCAGCATGACTGCGTACAAACATATTCCAAGTCA
GGAGCAGATAAAGCTGATATTGACGGAAAGATCAACTTATTGGGACTGGA
GGGTCAAGCGCTTCCACCCCTTTGTCATGAAATAGGTACAATCATGTCCA
CATGTGCGACAGAAATGCAAGAAACCTTCATGTGGGTCCGGGATGCTGCC
CGACACGGAAGAAAGAAGCTGTAAATGGGAGTTCCATGGAGAGGCAATAG
TGCGTACGCTGCATGCCGTAATAAAGAACAACGAAACAGATATTCGTCAG
AATTCCCTTCCGCGAGAAGGATAAGCCTAGCGGCCCACGAGAGACGTACT
TTACCGGAGGCAGAAAAACTGCTTGTCATGGTGTCAAGCCTACCATCCAA
GAGGGAGCACTTCAAAGGCCGTAAACTCCGGCACCGCAAGAGAAGCAGCG
AGCCTCTCTCGCTGGACATCTCAAATAAAACCGCTGTCTTCCAGCATGAC
TGCGTACAAACATATTCCAAGTCAGGAGCAGATAAAGCTGATATTGACGG
AAAGATCAACTTATTGGGACTGGAGGGTCAAGCGCTTCCACCCCTTTGTC
ATGAAATAGGTACAATCATGTCCACATGTGCGACAGAAATGCAAGAAACC
TTCATGTGGGTCCGGGATGCTGCCCGACACGGAAGAAAGAAGCTGTAAAT
GGGAGTTCCATGGAGAGGCAATAGTGCGTACGCTGCATGCCGTAATAAAG
AACAACGAAACAGATATTCGTCAGAATTCCCTTCCGCGAGAAGGATAAGC
CTAGCGGCCCACGAGAGACGTACTTTACCGGAGGCAGAAAAACTGCTTGT
CATGGTGTCAAGCCTACCATCCAAGAGGGAGCACTTCAAAGGCCGTAAAC
TCCGGCACCGCAAGAGAAGCAGCGAGCCTCTCTCGCTGGACATCTCAAAT
AAAACCGCTGTCTTCCAGCATGACTGCGTACAAACATATTCCAAGTCAGG
AGCAGATAAAGCTGATATTGACGGAAAGATCAACTTATTGGGACTGGAGG
GTCAAGCGCTTCCACCCCTTTGTCATGAAATAGGTACAATCATGTCCACA
TGTGCGACAGAAATGCAAGAAACCTTCATGTGGGTCCGGGATGCTGCCCG
ACACGGAAGAAAGAAGCTGTAAATGGGAGTTCCATGGAGAGGCAATAGTG
CGTACGCTGCATGCCGTAATAAAGAACAACGAAACAGATATTCGTCAGAA
TTCCCTTCCGCGAGAAGGATAAGCCTAGCGGCCCACGAGAGACGTACTTT
ACCGGAGGCAGAAAAACTGCTTGTCATGGTGTCAAGCCTACCATCCAAGA
GGGAGCACTTCAAAGGCCGTAAACTCCGGCACCGCAAGAGAAGCAGCGAG
CCTCTCTCGCTGGACATCTCAAATAAAACCGCTGTCTTCCAGCATGACTG
CGTACAAACATATTCCAAGTCAGGAGCAGATAAAGCTGATATTGACGGAA
AGATCAACTTATTGGGACTGGAGGGTCAAGCGCTTCCACCCCTTTGTCAT
GAAATAGGTACAATCATGTCCACATGTGCGACAGAAATGCAAGAAACCTT
CATGTGGGTCCGGGATGCTGCCCGACACGGAAGAAAGAAGCTGTAAATGG
GAGTTCCATGGAGAGGCAATAGTGCGTACGCTGCATGCCGTAATAAAGAA
CAACGAAACAGATATTCGTCAGAATTCCCTTCCGCGAGAAGGATAAGCCT
AGCGGCCCACGAGAGACGTACTTTACCGGAGGCAGAAAAACTGCTTGTCA
TGGTGTCAAGCCTACCATCCAAGAGGGAGCACTTCAAAGGCCGTAAACTC
CGGCACCGCAAGAGAAGCAGCGAGCCTCTCTCGCTGGACATCTCAAATAA
AACCGCTGTCTTCCAGCATGACTGCGTACAAACATATTCCAAGTCAGGAG
CAGATAAAGCTGATATTGACGGAAAGATCAACTTATTGGGACTGGAGGGT
CAAGCGCTTCCACCCCTTTGTCATGAAATAGGTACAATCATGTCCACATG
TGCGACAGAAATGCAAGAAACCTTCATGTGGGTCCGGGATGCTGCCCGAC
ACGGAAGAAAGAAGCTGTAA
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Synonyms
Publications