rna5413, rna5413 (mRNA) Nannochloropsis gaditana

Overview
Namerna5413
Unique Namerna5413
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length586
Alignment locationCM002465.1:943315..943807 +

Link to JBrowse

Properties
Property NameValue
Productzpr1 zinc-finger domain protein
Orig transcript idgnl|cribi|Naga_102997g1.8720.mrna
Orig protein idgnl|cribi|Naga_102997g1.8720
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:943315..943807 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102997g1gene5235Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5413rna5413-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25273.1cds5400Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5413 ID=rna5413|Name=rna5413|organism=Nannochloropsis gaditana|type=mRNA|length=586bp
TAGCTCTCCCCCCAAATCTCCAAGGCGACTGAGACAGAGAATGGTAAACC
CTCCTCAAGATCCGGCATTTGTGGCGGAGACTTCGAAGGAAGGGAAGGAG
GAAGGAAAACCAGACGTTCAGGGGGCAGTGCAGGGTGGAACGCCACAGCG
AGGACAGAGCACTCCATTGATCCTGCAAGATCTTAGCAAAACGATGGGGG
ACGACGATAACGGCATAATGGAAATACCACAGAGTTTGTGTATGGCCTGC
GGGGAATCTGGAACGACCAGGATGATCCTCACAAAGATTCCCTTCTTCCG
AGAAGTCATTGTGTCCTCGTTCGAGTGCGATTCTTGCGGATGGACCAACA
ACGAAGTGCAATTCGGAGGGGAAATCAAAGAGCGTGGGTGTCGCTTTGAG
CTCAAGGTGATGGAACCGGAAGATTTGAACCGACAGGTGATCAAGAGTGA
CACCGGCAGTATCCTCATTCCCGAATTGGAGCTGGAGATCCCCCCCAAGA
CGCAAAGGGGAAGCGTCAACACCATCGGTAGGGAGGGAGGGAGGGAGGGA
GGAAGGGAAGGAGGGAAGGAGGGAAGGAGGGAGTGA
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protein sequence of rna5413

>rna5413-protein ID=rna5413-protein|Name=rna5413|organism=Nannochloropsis gaditana|type=polypeptide|length=73bp
MRGEEGTLPFTFILDDPAGNSHVENPTAPRLDPKLRVVFYERTPSQDLMV
GLQPTEEARTAGRVDDAKPEHKA
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mRNA from alignment at CM002465.1:943315..943807+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5413 ID=rna5413|Name=rna5413|organism=Nannochloropsis gaditana|type=mRNA|length=493bp|location=Sequence derived from alignment at CM002465.1:943315..943807+ (Nannochloropsis gaditana)
ATgcgcggagaggagggaacgCTGCCCTTCACCTTCATCCTCGACGACCC
CGCCGGCAACAGCCACGTTGAGAACCCAACCGCCCCTCGCCTCGACCCCA
AACTCCGGGTAGTTTTCTACGAGCGGACGCCGAGTCAGGtatcccctcct
ttcttcctatttttctttctttcctctacCTCCGCCTGCTTGGCGTTACA
TGAGGCGTCTTACACCCTTTCTTtatctttttcttcctcccttcctccct
ccctccctccctccctccctcaggacTTGATGGTGGGGCTCCAGCCCacc
gaggaggcgaggacggcggggagggtggatgaCGCCAAGCCAGAGCATAA
GgcgttcgcgccaaaatcTTTCGAAGGGATCGACAGGCTTTTGGctgcgg
ggaaagggaaagggaaggaaggcgggggggagggaggggaaggggaggag
gagttgctGGGTCGAAAGGAAGCCATTGTTTTCCACCaggtaa
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Coding sequence (CDS) from alignment at CM002465.1:943315..943807+

>rna5413 ID=rna5413|Name=rna5413|organism=Nannochloropsis gaditana|type=CDS|length=666bp|location=Sequence derived from alignment at CM002465.1:943315..943807+ (Nannochloropsis gaditana)
ATgcgcggagaggagggaacgCTGCCCTTCACCTTCATCCTCGACGACCC
CGCCGGCAACAGCCACGTTGAGAACCCAACCGCCCCTCGCCTCGACCCCA
AACTCCGGGTAGTTTTCTACGAGCGGACGCCGAGTCAGgacTTGATGGTG
GGGCTCCAGCCCaccgaggaggcgaggacggcggggagggtggatgaCGC
CAAGCCAGAGCATAAGgcgtaaATgcgcggagaggagggaacgCTGCCCT
TCACCTTCATCCTCGACGACCCCGCCGGCAACAGCCACGTTGAGAACCCA
ACCGCCCCTCGCCTCGACCCCAAACTCCGGGTAGTTTTCTACGAGCGGAC
GCCGAGTCAGgacTTGATGGTGGGGCTCCAGCCCaccgaggaggcgagga
cggcggggagggtggatgaCGCCAAGCCAGAGCATAAGgcgtaaATgcgc
ggagaggagggaacgCTGCCCTTCACCTTCATCCTCGACGACCCCGCCGG
CAACAGCCACGTTGAGAACCCAACCGCCCCTCGCCTCGACCCCAAACTCC
GGGTAGTTTTCTACGAGCGGACGCCGAGTCAGgacTTGATGGTGGGGCTC
CAGCCCaccgaggaggcgaggacggcggggagggtggatgaCGCCAAGCC
AGAGCATAAGgcgtaa
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Synonyms
Publications