EWM25273.1, cds5400 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25273.1 vs. NCBI_GenBank
Match: gi|585107004|gb|EWM25273.1| (zpr1 zinc-finger domain protein [Nannochloropsis gaditana]) HSP 1 Score: 150.984 bits (380), Expect = 1.961e-46 Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0
Query: 1 MRGEEGTLPFTFILDDPAGNSHVENPTAPRLDPKLRVVFYERTPSQDLMVGLQPTEEARTAGRVDDAKPEHKA 73
MRGEEGTLPFTFILDDPAGNSHVENPTAPRLDPKLRVVFYERTPSQDLMVGLQPTEEARTAGRVDDAKPEHKA
Sbjct: 1 MRGEEGTLPFTFILDDPAGNSHVENPTAPRLDPKLRVVFYERTPSQDLMVGLQPTEEARTAGRVDDAKPEHKA 73
BLAST of EWM25273.1 vs. NCBI_GenBank
Match: gi|219111821|ref|XP_002177662.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217410547|gb|EEC50476.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 82.0333 bits (201), Expect = 1.448e-16 Identity = 36/69 (52.17%), Postives = 48/69 (69.57%), Query Frame = 0
Query: 4 EEGTLPFTFILDDPAGNSHVENPTAPRLDPKLRVVFYERTPSQDLMVGLQPTEEARTAGRVDDAKPEHK 72
+E PF +LDDPAGNS +ENP AP DP + Y RTP+QD+ +GLQP+++A G ++DA PEHK
Sbjct: 180 QESVFPFAIVLDDPAGNSFIENPRAPHHDPHTKSEKYFRTPTQDMALGLQPSQQAVEEGVINDANPEHK 248
BLAST of EWM25273.1 vs. NCBI_GenBank
Match: gi|299470135|emb|CBN78164.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 75.0998 bits (183), Expect = 3.935e-14 Identity = 34/63 (53.97%), Postives = 44/63 (69.84%), Query Frame = 0
Query: 3 GEEGTLPFTFILDDPAGNSHVENPTAPRLDPKLRVVFYERTPSQDLMVGLQPTEEARTAGRVD 65
G + LPFT ++DDP+GNS VENP+AP DP L+ + RT QD+ +GLQP+ EA AG VD
Sbjct: 192 GIDSELPFTMVVDDPSGNSFVENPSAPNKDPALKTSHFTRTAQQDMSLGLQPSNEALAAGTVD 254
BLAST of EWM25273.1 vs. NCBI_GenBank
Match: gi|1214681527|gb|OWZ00240.1| (hypothetical protein PHMEG_00028616 [Phytophthora megakarya]) HSP 1 Score: 74.3294 bits (181), Expect = 6.635e-14 Identity = 32/48 (66.67%), Postives = 38/48 (79.17%), Query Frame = 0
Query: 7 TLPFTFILDDPAGNSHVENPTAPRLDPKLRVVFYERTPSQDLMVGLQP 54
TLPFT +LDDP+GNSH+ENP AP +DPKL+V Y R+ QDL GLQP
Sbjct: 195 TLPFTVVLDDPSGNSHIENPHAPSVDPKLKVTHYYRSEQQDLDCGLQP 242
BLAST of EWM25273.1 vs. NCBI_GenBank
Match: gi|325188918|emb|CCA23447.1| (conserved hypothetical protein [Albugo laibachii Nc14]) HSP 1 Score: 73.559 bits (179), Expect = 1.098e-13 Identity = 31/48 (64.58%), Postives = 38/48 (79.17%), Query Frame = 0
Query: 7 TLPFTFILDDPAGNSHVENPTAPRLDPKLRVVFYERTPSQDLMVGLQP 54
TLPFT ++DDPAGNSH+ENP AP+LD K+ V Y R+ +QDL GLQP
Sbjct: 191 TLPFTIVMDDPAGNSHIENPNAPQLDAKMTVSHYYRSEAQDLSCGLQP 238
BLAST of EWM25273.1 vs. NCBI_GenBank
Match: gi|635365349|emb|CCI46297.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 73.1738 bits (178), Expect = 1.593e-13 Identity = 31/48 (64.58%), Postives = 38/48 (79.17%), Query Frame = 0
Query: 7 TLPFTFILDDPAGNSHVENPTAPRLDPKLRVVFYERTPSQDLMVGLQP 54
TLPF I+DDPAGNSH+ENP AP+ DPK++V Y R+ +QDL GLQP
Sbjct: 191 TLPFKIIIDDPAGNSHIENPHAPQSDPKMKVTQYYRSEAQDLQCGLQP 238
BLAST of EWM25273.1 vs. NCBI_GenBank
Match: gi|301103574|ref|XP_002900873.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262101628|gb|EEY59680.1| conserved hypothetical protein [Phytophthora infestans T30-4]) HSP 1 Score: 72.4034 bits (176), Expect = 3.158e-13 Identity = 31/49 (63.27%), Postives = 37/49 (75.51%), Query Frame = 0
Query: 7 TLPFTFILDDPAGNSHVENPTAPRLDPKLRVVFYERTPSQDLMVGLQPT 55
TLPFT +LDDP+GNSH+ENP AP D KL+V Y R+ QDL+ GLQP
Sbjct: 196 TLPFTVVLDDPSGNSHIENPHAPAADSKLKVTHYYRSEQQDLICGLQPN 244
BLAST of EWM25273.1 vs. NCBI_GenBank
Match: gi|567950767|gb|ETK76475.1| (hypothetical protein L915_17125 [Phytophthora parasitica]) HSP 1 Score: 72.4034 bits (176), Expect = 3.285e-13 Identity = 31/48 (64.58%), Postives = 37/48 (77.08%), Query Frame = 0
Query: 7 TLPFTFILDDPAGNSHVENPTAPRLDPKLRVVFYERTPSQDLMVGLQP 54
TLPFT +LDDP+GNSH+ENP AP DPK++V Y R+ QDL GLQP
Sbjct: 197 TLPFTIVLDDPSGNSHIENPHAPAADPKMKVTHYYRSEQQDLDCGLQP 244
BLAST of EWM25273.1 vs. NCBI_GenBank
Match: gi|675174381|ref|XP_008896075.1| (hypothetical protein PPTG_04021 [Phytophthora parasitica INRA-310] >gi|566013310|gb|ETI36221.1| hypothetical protein F443_17588 [Phytophthora parasitica P1569] >gi|567979434|gb|ETL29913.1| hypothetical protein L916_17020 [Phytophthora parasitica] >gi|568008929|gb|ETL83143.1| hypothetical protein L917_16847 [Phytophthora parasitica] >gi|568038851|gb|ETM36366.1| hypothetical protein L914_16926 [Phytophthora parasitica] >gi|568103742|gb|ETN18399.1| hypothetical protein PPTG_04021 [Phytophthora parasitica INRA-310] >gi|570317022|gb|ETO64970.1| hypothetical protein F444_17630 [Phytophthora parasitica P1976] >gi|570940816|gb|ETP06073.1| hypothetical protein F441_17458 [Phytophthora parasitica CJ01A1] >gi|570971063|gb|ETP34182.1| hypothetical protein F442_17445 [Phytophthora parasitica P10297] >gi|970624132|gb|KUF72089.1| Zinc finger protein ZPR1 [Phytophthora nicotianae] >gi|970659636|gb|KUF97260.1| Myb protein J [Phytophthora nicotianae]) HSP 1 Score: 72.4034 bits (176), Expect = 3.285e-13 Identity = 31/48 (64.58%), Postives = 37/48 (77.08%), Query Frame = 0
Query: 7 TLPFTFILDDPAGNSHVENPTAPRLDPKLRVVFYERTPSQDLMVGLQP 54
TLPFT +LDDP+GNSH+ENP AP DPK++V Y R+ QDL GLQP
Sbjct: 197 TLPFTIVLDDPSGNSHIENPHAPAADPKMKVTHYYRSEQQDLDCGLQP 244
BLAST of EWM25273.1 vs. NCBI_GenBank
Match: gi|1021049180|gb|KZN06960.1| (hypothetical protein DCAR_007797 [Daucus carota subsp. sativus]) HSP 1 Score: 72.0182 bits (175), Expect = 5.092e-13 Identity = 30/46 (65.22%), Postives = 36/46 (78.26%), Query Frame = 0
Query: 6 GTLPFTFILDDPAGNSHVENPTAPRLDPKLRVVFYERTPSQDLMVG 51
G PFTF+LDDPAGNS++ENP AP LDP L + FYERTP Q ++G
Sbjct: 164 GDSPFTFVLDDPAGNSYIENPFAPSLDPSLAIKFYERTPEQQALLG 209 The following BLAST results are available for this feature:
BLAST of EWM25273.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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