EWM25273.1, cds5400 (CDS) Nannochloropsis gaditana

Overview
NameEWM25273.1
Unique Namecds5400
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:943315..943452 +
Alignment locationCM002465.1:943588..943667 +
Alignment locationCM002465.1:943804..943807 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25273.1
Productzpr1 zinc-finger domain protein
Orig transcript idgnl|cribi|Naga_102997g1.8720.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:943315..943452 +
CM002465.1supercontigCM002465.1:943588..943667 +
CM002465.1supercontigCM002465.1:943804..943807 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Homology
BLAST of EWM25273.1 vs. NCBI_GenBank
Match: gi|585107004|gb|EWM25273.1| (zpr1 zinc-finger domain protein [Nannochloropsis gaditana])

HSP 1 Score: 150.984 bits (380), Expect = 1.961e-46
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0
Query:    1 MRGEEGTLPFTFILDDPAGNSHVENPTAPRLDPKLRVVFYERTPSQDLMVGLQPTEEARTAGRVDDAKPEHKA 73
            MRGEEGTLPFTFILDDPAGNSHVENPTAPRLDPKLRVVFYERTPSQDLMVGLQPTEEARTAGRVDDAKPEHKA
Sbjct:    1 MRGEEGTLPFTFILDDPAGNSHVENPTAPRLDPKLRVVFYERTPSQDLMVGLQPTEEARTAGRVDDAKPEHKA 73          
BLAST of EWM25273.1 vs. NCBI_GenBank
Match: gi|219111821|ref|XP_002177662.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217410547|gb|EEC50476.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 82.0333 bits (201), Expect = 1.448e-16
Identity = 36/69 (52.17%), Postives = 48/69 (69.57%), Query Frame = 0
Query:    4 EEGTLPFTFILDDPAGNSHVENPTAPRLDPKLRVVFYERTPSQDLMVGLQPTEEARTAGRVDDAKPEHK 72
            +E   PF  +LDDPAGNS +ENP AP  DP  +   Y RTP+QD+ +GLQP+++A   G ++DA PEHK
Sbjct:  180 QESVFPFAIVLDDPAGNSFIENPRAPHHDPHTKSEKYFRTPTQDMALGLQPSQQAVEEGVINDANPEHK 248          
BLAST of EWM25273.1 vs. NCBI_GenBank
Match: gi|299470135|emb|CBN78164.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 75.0998 bits (183), Expect = 3.935e-14
Identity = 34/63 (53.97%), Postives = 44/63 (69.84%), Query Frame = 0
Query:    3 GEEGTLPFTFILDDPAGNSHVENPTAPRLDPKLRVVFYERTPSQDLMVGLQPTEEARTAGRVD 65
            G +  LPFT ++DDP+GNS VENP+AP  DP L+   + RT  QD+ +GLQP+ EA  AG VD
Sbjct:  192 GIDSELPFTMVVDDPSGNSFVENPSAPNKDPALKTSHFTRTAQQDMSLGLQPSNEALAAGTVD 254          
BLAST of EWM25273.1 vs. NCBI_GenBank
Match: gi|1214681527|gb|OWZ00240.1| (hypothetical protein PHMEG_00028616 [Phytophthora megakarya])

HSP 1 Score: 74.3294 bits (181), Expect = 6.635e-14
Identity = 32/48 (66.67%), Postives = 38/48 (79.17%), Query Frame = 0
Query:    7 TLPFTFILDDPAGNSHVENPTAPRLDPKLRVVFYERTPSQDLMVGLQP 54
            TLPFT +LDDP+GNSH+ENP AP +DPKL+V  Y R+  QDL  GLQP
Sbjct:  195 TLPFTVVLDDPSGNSHIENPHAPSVDPKLKVTHYYRSEQQDLDCGLQP 242          
BLAST of EWM25273.1 vs. NCBI_GenBank
Match: gi|325188918|emb|CCA23447.1| (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 73.559 bits (179), Expect = 1.098e-13
Identity = 31/48 (64.58%), Postives = 38/48 (79.17%), Query Frame = 0
Query:    7 TLPFTFILDDPAGNSHVENPTAPRLDPKLRVVFYERTPSQDLMVGLQP 54
            TLPFT ++DDPAGNSH+ENP AP+LD K+ V  Y R+ +QDL  GLQP
Sbjct:  191 TLPFTIVMDDPAGNSHIENPNAPQLDAKMTVSHYYRSEAQDLSCGLQP 238          
BLAST of EWM25273.1 vs. NCBI_GenBank
Match: gi|635365349|emb|CCI46297.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 73.1738 bits (178), Expect = 1.593e-13
Identity = 31/48 (64.58%), Postives = 38/48 (79.17%), Query Frame = 0
Query:    7 TLPFTFILDDPAGNSHVENPTAPRLDPKLRVVFYERTPSQDLMVGLQP 54
            TLPF  I+DDPAGNSH+ENP AP+ DPK++V  Y R+ +QDL  GLQP
Sbjct:  191 TLPFKIIIDDPAGNSHIENPHAPQSDPKMKVTQYYRSEAQDLQCGLQP 238          
BLAST of EWM25273.1 vs. NCBI_GenBank
Match: gi|301103574|ref|XP_002900873.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262101628|gb|EEY59680.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 72.4034 bits (176), Expect = 3.158e-13
Identity = 31/49 (63.27%), Postives = 37/49 (75.51%), Query Frame = 0
Query:    7 TLPFTFILDDPAGNSHVENPTAPRLDPKLRVVFYERTPSQDLMVGLQPT 55
            TLPFT +LDDP+GNSH+ENP AP  D KL+V  Y R+  QDL+ GLQP 
Sbjct:  196 TLPFTVVLDDPSGNSHIENPHAPAADSKLKVTHYYRSEQQDLICGLQPN 244          
BLAST of EWM25273.1 vs. NCBI_GenBank
Match: gi|567950767|gb|ETK76475.1| (hypothetical protein L915_17125 [Phytophthora parasitica])

HSP 1 Score: 72.4034 bits (176), Expect = 3.285e-13
Identity = 31/48 (64.58%), Postives = 37/48 (77.08%), Query Frame = 0
Query:    7 TLPFTFILDDPAGNSHVENPTAPRLDPKLRVVFYERTPSQDLMVGLQP 54
            TLPFT +LDDP+GNSH+ENP AP  DPK++V  Y R+  QDL  GLQP
Sbjct:  197 TLPFTIVLDDPSGNSHIENPHAPAADPKMKVTHYYRSEQQDLDCGLQP 244          
BLAST of EWM25273.1 vs. NCBI_GenBank
Match: gi|675174381|ref|XP_008896075.1| (hypothetical protein PPTG_04021 [Phytophthora parasitica INRA-310] >gi|566013310|gb|ETI36221.1| hypothetical protein F443_17588 [Phytophthora parasitica P1569] >gi|567979434|gb|ETL29913.1| hypothetical protein L916_17020 [Phytophthora parasitica] >gi|568008929|gb|ETL83143.1| hypothetical protein L917_16847 [Phytophthora parasitica] >gi|568038851|gb|ETM36366.1| hypothetical protein L914_16926 [Phytophthora parasitica] >gi|568103742|gb|ETN18399.1| hypothetical protein PPTG_04021 [Phytophthora parasitica INRA-310] >gi|570317022|gb|ETO64970.1| hypothetical protein F444_17630 [Phytophthora parasitica P1976] >gi|570940816|gb|ETP06073.1| hypothetical protein F441_17458 [Phytophthora parasitica CJ01A1] >gi|570971063|gb|ETP34182.1| hypothetical protein F442_17445 [Phytophthora parasitica P10297] >gi|970624132|gb|KUF72089.1| Zinc finger protein ZPR1 [Phytophthora nicotianae] >gi|970659636|gb|KUF97260.1| Myb protein J [Phytophthora nicotianae])

HSP 1 Score: 72.4034 bits (176), Expect = 3.285e-13
Identity = 31/48 (64.58%), Postives = 37/48 (77.08%), Query Frame = 0
Query:    7 TLPFTFILDDPAGNSHVENPTAPRLDPKLRVVFYERTPSQDLMVGLQP 54
            TLPFT +LDDP+GNSH+ENP AP  DPK++V  Y R+  QDL  GLQP
Sbjct:  197 TLPFTIVLDDPSGNSHIENPHAPAADPKMKVTHYYRSEQQDLDCGLQP 244          
BLAST of EWM25273.1 vs. NCBI_GenBank
Match: gi|1021049180|gb|KZN06960.1| (hypothetical protein DCAR_007797 [Daucus carota subsp. sativus])

HSP 1 Score: 72.0182 bits (175), Expect = 5.092e-13
Identity = 30/46 (65.22%), Postives = 36/46 (78.26%), Query Frame = 0
Query:    6 GTLPFTFILDDPAGNSHVENPTAPRLDPKLRVVFYERTPSQDLMVG 51
            G  PFTF+LDDPAGNS++ENP AP LDP L + FYERTP Q  ++G
Sbjct:  164 GDSPFTFVLDDPAGNSYIENPFAPSLDPSLAIKFYERTPEQQALLG 209          
The following BLAST results are available for this feature:
BLAST of EWM25273.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107004|gb|EWM25273.1|1.961e-46100.00zpr1 zinc-finger domain protein [Nannochloropsis g... [more]
gi|219111821|ref|XP_002177662.1|1.448e-1652.17predicted protein, partial [Phaeodactylum tricornu... [more]
gi|299470135|emb|CBN78164.1|3.935e-1453.97conserved unknown protein [Ectocarpus siliculosus][more]
gi|1214681527|gb|OWZ00240.1|6.635e-1466.67hypothetical protein PHMEG_00028616 [Phytophthora ... [more]
gi|325188918|emb|CCA23447.1|1.098e-1364.58conserved hypothetical protein [Albugo laibachii N... [more]
gi|635365349|emb|CCI46297.1|1.593e-1364.58unnamed protein product [Albugo candida][more]
gi|301103574|ref|XP_002900873.1|3.158e-1363.27conserved hypothetical protein [Phytophthora infes... [more]
gi|567950767|gb|ETK76475.1|3.285e-1364.58hypothetical protein L915_17125 [Phytophthora para... [more]
gi|675174381|ref|XP_008896075.1|3.285e-1364.58hypothetical protein PPTG_04021 [Phytophthora para... [more]
gi|1021049180|gb|KZN06960.1|5.092e-1365.22hypothetical protein DCAR_007797 [Daucus carota su... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5413rna5413Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications