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Properties
| Property Name | Value |
|---|
| Product | zinc finger protein zpr1 |
| Orig transcript id | gnl|cribi|Naga_101117g1.2304.mrna |
| Orig protein id | gnl|cribi|Naga_101117g1.2304 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002465.1 | supercontig | CM002465.1:941665..942931 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5412 ID=rna5412|Name=rna5412|organism=Nannochloropsis gaditana|type=mRNA|length=552bp
ATGAATCCAGAAGACAGGAGGGGAAGACGAGAGAAGGTTACACAGGTGCT
CATCTTGGGGAGTGGCATGGACACTCGTGCATGGCGCCTGCCCCTCCCGG
ACGTGACGGTGATTGAAGTGGATGTTCCCGCGGTGGTGCGGGCGAAGGAG
GAGGTTCTGAAGCGTCTCCAGGAGAAGGAAGGACAGTTACCACCACCATC
GCCATCGTCATCACCCCCCGAAATCAGCCCTCCATCCTCCTTAACTCAGC
TCACGGTCAAAGCCCGCATCGTCATTCCCGCCAATTTTACGGCCACCACC
CCTCCCTCCCTCCCGTCCTCCCCCTCTTCCTGGGTCCAAGCCGTCCGCGC
CGGGCTTCCCGCCCCAGAGAAGCCCCTCGTCATCCTTCTAGAAGGTCTGC
TCATGTACCTGCCCGAGGACGCCGTGAAGGAGGTGCTGACGCAGGCGGGC
CGGATGGGCGAGGCTCCGGGTAGCGTGATTGGGATCAGCCTGGTGGACCG
GGAAAGCGTGAAAATGGGGATGCGACGAAGAAGAGGCCCGGGCTTTTTTT
GA back to topprotein sequence of rna5412 >rna5412-protein ID=rna5412-protein|Name=rna5412|organism=Nannochloropsis gaditana|type=polypeptide|length=181bp
MVNPPQDPAFVAETSKEGKEEGKPDVQGAVQGGTPQRGQSTPLILQDLSK
TMGDDDNGIMEIPQSLCMACGESGTTRMILTKIPFFREVIVSSFECDSCG
WTNNEVQFGGEIKERGCRFELKVMEPEDLNRQVIKSDTGSILIPELELEI
PPKTQRGSVNTIGREGGREGGREGGKEGRRE back to topmRNA from alignment at CM002465.1:941665..942931+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5412 ID=rna5412|Name=rna5412|organism=Nannochloropsis gaditana|type=mRNA|length=1267bp|location=Sequence derived from alignment at CM002465.1:941665..942931+ (Nannochloropsis gaditana)
TAGCTCTCCCCCCAAATCTCCAAGGCGACTGAGACAGAGAATGGTAAACC
CTCCTCAAGATCCGGCATTTGTGGCGGAGACttcgaaggaagggaaggag
gaaggaaaaccaGACGTTCAGGGGGCAGTGCAGGGTGGAACGCCACAGCG
AGGACAGAGCACTCCATTGATCCTGCAAGATCTTAGCAAAACGATGGGGG
ACGACGATAACGGTAAGCTGCACGTGTTGAAAAGGATAAGATTTTGGAGC
ATATAGAGCCTGGAGCTTTGGGGACAGAGGGCGCACGCCACATGGGGTtg
actttccttcccccacgtCAGGCATAATGGAAATACCACAGAGTTTGTGT
ATGGCCTGCGGGGAATCTGGAACGACCAGGATGATCCTCACAAAGATTCC
CTTCTTCCGAGAAGTCATTGTGTCCTCGTTCGAGTGCGATTCTTGCGGAT
GGACCAACAACGAAGTGCAATTCGGAGGGGAAATCAAAGAGCGTGGGTGT
CGCTTTGAGCTCAAGGTTCGACTTAGGAactgggggggagggaaaggctc
gGCATGAAGAGGTGTGACTCATGTGTGTTCGCAGGATCCTAGGGGTGAAC
GGACGCTGGCACGGTCctagagggggaggaggaccccgGGCCGTGACGGG
AGGTTGAAGTCCCGTATGAAAATGATGGGTGTGGAGGAATTTATGCCTGA
GGAATGCGCCGACTCCTTGGGGCCTCTGTGTGTGGTGACGACACACATCT
CGTACGTCTGACGTGGCCGATTCCTCCACGTGCGCACAGGTGATGGAACC
GGAAGATTTGAACCGACAGGTAGGGTtcgtgggaggggatggggagggag
gttcgTTCCCTCCCGTGGCGTGTCCGCCCTagctcgctcctccctccatg
ttTCTGGGAGGggttccctctttctctctctctctctctctctctcgttC
TACGccattttctctttttttaatTCCTTTCTCTCTGTCTTGTTTTCTAC
aatcttctttttcttgcgtccctcccccccgcccctgctcTCTTCACCCC
TCTTTTCGACATACTTCCCTCAtgactccccctcctttttccacctccct
ccctccgctgccCGTAGGTGATCAAGAGTGACACCGGCAGTATCCTCATT
CCCGAATTGGAGCTGGAGATCCCCCCCAAGACGCAAAGGGGAAGCGTCAA
CACCatcggtagggagggagggagggagggaggaagggaaggagggaagg
agggaaggagggagtga back to topCoding sequence (CDS) from alignment at CM002465.1:941665..942931+ >rna5412 ID=rna5412|Name=rna5412|organism=Nannochloropsis gaditana|type=CDS|length=2184bp|location=Sequence derived from alignment at CM002465.1:941665..942931+ (Nannochloropsis gaditana)
ATGGTAAACCCTCCTCAAGATCCGGCATTTGTGGCGGAGACttcgaagga
agggaaggaggaaggaaaaccaGACGTTCAGGGGGCAGTGCAGGGTGGAA
CGCCACAGCGAGGACAGAGCACTCCATTGATCCTGCAAGATCTTAGCAAA
ACGATGGGGGACGACGATAACGGCATAATGGAAATACCACAGAGTTTGTG
TATGGCCTGCGGGGAATCTGGAACGACCAGGATGATCCTCACAAAGATTC
CCTTCTTCCGAGAAGTCATTGTGTCCTCGTTCGAGTGCGATTCTTGCGGA
TGGACCAACAACGAAGTGCAATTCGGAGGGGAAATCAAAGAGCGTGGGTG
TCGCTTTGAGCTCAAGGTGATGGAACCGGAAGATTTGAACCGACAGGTGA
TCAAGAGTGACACCGGCAGTATCCTCATTCCCGAATTGGAGCTGGAGATC
CCCCCCAAGACGCAAAGGGGAAGCGTCAACACCatcggtagggagggagg
gagggagggaggaagggaaggagggaaggagggaaggagggagtgaATGG
TAAACCCTCCTCAAGATCCGGCATTTGTGGCGGAGACttcgaaggaaggg
aaggaggaaggaaaaccaGACGTTCAGGGGGCAGTGCAGGGTGGAACGCC
ACAGCGAGGACAGAGCACTCCATTGATCCTGCAAGATCTTAGCAAAACGA
TGGGGGACGACGATAACGGCATAATGGAAATACCACAGAGTTTGTGTATG
GCCTGCGGGGAATCTGGAACGACCAGGATGATCCTCACAAAGATTCCCTT
CTTCCGAGAAGTCATTGTGTCCTCGTTCGAGTGCGATTCTTGCGGATGGA
CCAACAACGAAGTGCAATTCGGAGGGGAAATCAAAGAGCGTGGGTGTCGC
TTTGAGCTCAAGGTGATGGAACCGGAAGATTTGAACCGACAGGTGATCAA
GAGTGACACCGGCAGTATCCTCATTCCCGAATTGGAGCTGGAGATCCCCC
CCAAGACGCAAAGGGGAAGCGTCAACACCatcggtagggagggagggagg
gagggaggaagggaaggagggaaggagggaaggagggagtgaATGGTAAA
CCCTCCTCAAGATCCGGCATTTGTGGCGGAGACttcgaaggaagggaagg
aggaaggaaaaccaGACGTTCAGGGGGCAGTGCAGGGTGGAACGCCACAG
CGAGGACAGAGCACTCCATTGATCCTGCAAGATCTTAGCAAAACGATGGG
GGACGACGATAACGGCATAATGGAAATACCACAGAGTTTGTGTATGGCCT
GCGGGGAATCTGGAACGACCAGGATGATCCTCACAAAGATTCCCTTCTTC
CGAGAAGTCATTGTGTCCTCGTTCGAGTGCGATTCTTGCGGATGGACCAA
CAACGAAGTGCAATTCGGAGGGGAAATCAAAGAGCGTGGGTGTCGCTTTG
AGCTCAAGGTGATGGAACCGGAAGATTTGAACCGACAGGTGATCAAGAGT
GACACCGGCAGTATCCTCATTCCCGAATTGGAGCTGGAGATCCCCCCCAA
GACGCAAAGGGGAAGCGTCAACACCatcggtagggagggagggagggagg
gaggaagggaaggagggaaggagggaaggagggagtgaATGGTAAACCCT
CCTCAAGATCCGGCATTTGTGGCGGAGACttcgaaggaagggaaggagga
aggaaaaccaGACGTTCAGGGGGCAGTGCAGGGTGGAACGCCACAGCGAG
GACAGAGCACTCCATTGATCCTGCAAGATCTTAGCAAAACGATGGGGGAC
GACGATAACGGCATAATGGAAATACCACAGAGTTTGTGTATGGCCTGCGG
GGAATCTGGAACGACCAGGATGATCCTCACAAAGATTCCCTTCTTCCGAG
AAGTCATTGTGTCCTCGTTCGAGTGCGATTCTTGCGGATGGACCAACAAC
GAAGTGCAATTCGGAGGGGAAATCAAAGAGCGTGGGTGTCGCTTTGAGCT
CAAGGTGATGGAACCGGAAGATTTGAACCGACAGGTGATCAAGAGTGACA
CCGGCAGTATCCTCATTCCCGAATTGGAGCTGGAGATCCCCCCCAAGACG
CAAAGGGGAAGCGTCAACACCatcggtagggagggagggagggagggagg
aagggaaggagggaaggagggaaggagggagtga back to top
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