EWM25274.1, cds5399 (CDS) Nannochloropsis gaditana

Overview
NameEWM25274.1
Unique Namecds5399
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:941705..941876 +
Alignment locationCM002465.1:941986..942179 +
Alignment locationCM002465.1:942454..942483 +
Alignment locationCM002465.1:942782..942931 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25274.1
Productzinc finger protein zpr1
Orig transcript idgnl|cribi|Naga_101117g1.2304.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:941705..941876 +
CM002465.1supercontigCM002465.1:941986..942179 +
CM002465.1supercontigCM002465.1:942454..942483 +
CM002465.1supercontigCM002465.1:942782..942931 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0008270zinc ion binding
Vocabulary: INTERPRO
TermDefinition
IPR004457Znf_ZPR1
Homology
BLAST of EWM25274.1 vs. NCBI_GenBank
Match: gi|585107006|gb|EWM25274.1| (zinc finger protein zpr1 [Nannochloropsis gaditana])

HSP 1 Score: 362.459 bits (929), Expect = 1.115e-126
Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 0
Query:    1 MVNPPQDPAFVAETSKEGKEEGKPDVQGAVQGGTPQRGQSTPLILQDLSKTMGDDDNGIMEIPQSLCMACGESGTTRMILTKIPFFREVIVSSFECDSCGWTNNEVQFGGEIKERGCRFELKVMEPEDLNRQVIKSDTGSILIPELELEIPPKTQRGSVNTIGREGGREGGREGGKEGRRE 181
            MVNPPQDPAFVAETSKEGKEEGKPDVQGAVQGGTPQRGQSTPLILQDLSKTMGDDDNGIMEIPQSLCMACGESGTTRMILTKIPFFREVIVSSFECDSCGWTNNEVQFGGEIKERGCRFELKVMEPEDLNRQVIKSDTGSILIPELELEIPPKTQRGSVNTIGREGGREGGREGGKEGRRE
Sbjct:    1 MVNPPQDPAFVAETSKEGKEEGKPDVQGAVQGGTPQRGQSTPLILQDLSKTMGDDDNGIMEIPQSLCMACGESGTTRMILTKIPFFREVIVSSFECDSCGWTNNEVQFGGEIKERGCRFELKVMEPEDLNRQVIKSDTGSILIPELELEIPPKTQRGSVNTIGREGGREGGREGGKEGRRE 181          
BLAST of EWM25274.1 vs. NCBI_GenBank
Match: gi|698781441|ref|XP_009823764.1| (hypothetical protein, variant 1 [Aphanomyces astaci] >gi|574121486|gb|ETV86963.1| hypothetical protein, variant 1 [Aphanomyces astaci])

HSP 1 Score: 147.132 bits (370), Expect = 2.811e-39
Identity = 78/174 (44.83%), Postives = 110/174 (63.22%), Query Frame = 0
Query:    8 PAFVAETSKEGKEEGKPDVQGAVQGGTPQRGQSTPLILQDLSKTMGDDDNGIMEIPQSLCMACGESGTTRMILTKIPFFREVIVSSFECDSCGWTNNEVQFGGEIKERGCRFELKVMEPEDLNRQVIKSDTGSILIPELELEIPPKTQRGSVNTIGREGGREGGREGGKEGRRE 181
            PA +  T+    +    D++   +  T Q   +T     ++   + DD   I E+ QSLC+ C E G T+++LT+IP+FREVI+ SF C+ CG+ N+EVQFGG I+E+G R EL V   EDLNRQ+IKSDT  I+ PE++LEIP KTQ+G++NTI  EG      EG +E + E
Sbjct:    6 PAALGGTTTNKGDRVHLDIEEGDKAATTQDDDTTQ---SEMFSDINDDTPNITEL-QSLCINCHEDGMTKLLLTRIPYFREVILMSFACEHCGFKNSEVQFGGTIQEKGVRMELAVQTREDLNRQLIKSDTAVIVFPEIDLEIPAKTQQGTINTI--EGFIAKAIEGLRENQEE 173          

HSP 2 Score: 83.1889 bits (204), Expect = 1.452e-15
Identity = 40/96 (41.67%), Postives = 58/96 (60.42%), Query Frame = 0
Query:   67 CMACGESGTTRMILTKIPFFREVIVSSFECDSCGWTNNEVQFGGEIKERGCRFELKVMEPEDLNRQVIKSDTGSILIPELELEIPPKTQRGSVNTI 162
            C +C + G + M +T IP F+EVI+ +F C+ CG+  NEV+ GG I   G R  L V +   L+R V+KSD+  + IPE+ELE+   +  G   TI
Sbjct:  292 CHSCFKDGESMMCITDIPHFKEVIIMAFNCEHCGFKTNEVKAGGAIPPFGERMVLHVQDASYLDRDVLKSDSACVHIPEIELEMMSGSLGGLYTTI 387          
BLAST of EWM25274.1 vs. NCBI_GenBank
Match: gi|698781437|ref|XP_009823762.1| (hypothetical protein, variant 2 [Aphanomyces astaci] >gi|698781439|ref|XP_009823763.1| hypothetical protein, variant 3 [Aphanomyces astaci] >gi|574121487|gb|ETV86964.1| hypothetical protein, variant 2 [Aphanomyces astaci] >gi|574121488|gb|ETV86965.1| hypothetical protein, variant 3 [Aphanomyces astaci])

HSP 1 Score: 146.362 bits (368), Expect = 3.142e-39
Identity = 78/174 (44.83%), Postives = 110/174 (63.22%), Query Frame = 0
Query:    8 PAFVAETSKEGKEEGKPDVQGAVQGGTPQRGQSTPLILQDLSKTMGDDDNGIMEIPQSLCMACGESGTTRMILTKIPFFREVIVSSFECDSCGWTNNEVQFGGEIKERGCRFELKVMEPEDLNRQVIKSDTGSILIPELELEIPPKTQRGSVNTIGREGGREGGREGGKEGRRE 181
            PA +  T+    +    D++   +  T Q   +T     ++   + DD   I E+ QSLC+ C E G T+++LT+IP+FREVI+ SF C+ CG+ N+EVQFGG I+E+G R EL V   EDLNRQ+IKSDT  I+ PE++LEIP KTQ+G++NTI  EG      EG +E + E
Sbjct:    6 PAALGGTTTNKGDRVHLDIEEGDKAATTQDDDTTQ---SEMFSDINDDTPNITEL-QSLCINCHEDGMTKLLLTRIPYFREVILMSFACEHCGFKNSEVQFGGTIQEKGVRMELAVQTREDLNRQLIKSDTAVIVFPEIDLEIPAKTQQGTINTI--EGFIAKAIEGLRENQEE 173          
BLAST of EWM25274.1 vs. NCBI_GenBank
Match: gi|635365349|emb|CCI46297.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 149.058 bits (375), Expect = 4.392e-39
Identity = 64/112 (57.14%), Postives = 84/112 (75.00%), Query Frame = 0
Query:   51 TMGDDDNGIMEIPQSLCMACGESGTTRMILTKIPFFREVIVSSFECDSCGWTNNEVQFGGEIKERGCRFELKVMEPEDLNRQVIKSDTGSILIPELELEIPPKTQRGSVNTI 162
            T  D D   + I +SLCM C E+G T ++LT IP+FRE+I+ SFEC+ CG+ N+EVQFGG I+E+GC+ E  V    DLNRQ+IK+DT ++  PELE EIPPKTQRG++NTI
Sbjct:   36 TAEDHDEHNVTIMESLCMHCKENGNTSLLLTSIPYFREIILMSFECEHCGFRNSEVQFGGTIQEKGCKIEFHVENASDLNRQIIKADTATVFFPELEFEIPPKTQRGTINTI 147          

HSP 2 Score: 91.6633 bits (226), Expect = 2.291e-18
Identity = 48/115 (41.74%), Postives = 71/115 (61.74%), Query Frame = 0
Query:   67 CMACGESGTTRMILTKIPFFREVIVSSFECDSCGWTNNEVQFGGEIKERGCRFELKV---MEPEDLNRQVIKSDTGSILIPELELEIPPKTQRGSVNTIGREGGREGGREGGKEG 178
            C +C   G  RM +T IP F+EVI+ +F C+ CG+ +NEV+ GG I   G R  L+    ++PE LNR ++KSD+ S++IPELELE+   +  G   T+  EG  +  R+  +EG
Sbjct:  280 CHSCQTKGNARMCVTDIPHFKEVIIMAFNCEHCGFRSNEVKAGGSIPSFGERITLRADISLDPEVLNRDILKSDSASVVIPELELELVHGSLGGLYTTV--EGLLDRIRQNIEEG 392          
BLAST of EWM25274.1 vs. NCBI_GenBank
Match: gi|698781435|ref|XP_009823761.1| (hypothetical protein H257_01984 [Aphanomyces astaci] >gi|574121485|gb|ETV86962.1| hypothetical protein H257_01984 [Aphanomyces astaci])

HSP 1 Score: 146.747 bits (369), Expect = 3.118e-38
Identity = 78/174 (44.83%), Postives = 110/174 (63.22%), Query Frame = 0
Query:    8 PAFVAETSKEGKEEGKPDVQGAVQGGTPQRGQSTPLILQDLSKTMGDDDNGIMEIPQSLCMACGESGTTRMILTKIPFFREVIVSSFECDSCGWTNNEVQFGGEIKERGCRFELKVMEPEDLNRQVIKSDTGSILIPELELEIPPKTQRGSVNTIGREGGREGGREGGKEGRRE 181
            PA +  T+    +    D++   +  T Q   +T     ++   + DD   I E+ QSLC+ C E G T+++LT+IP+FREVI+ SF C+ CG+ N+EVQFGG I+E+G R EL V   EDLNRQ+IKSDT  I+ PE++LEIP KTQ+G++NTI  EG      EG +E + E
Sbjct:    6 PAALGGTTTNKGDRVHLDIEEGDKAATTQDDDTTQ---SEMFSDINDDTPNITEL-QSLCINCHEDGMTKLLLTRIPYFREVILMSFACEHCGFKNSEVQFGGTIQEKGVRMELAVQTREDLNRQLIKSDTAVIVFPEIDLEIPAKTQQGTINTI--EGFIAKAIEGLRENQEE 173          

HSP 2 Score: 83.5741 bits (205), Expect = 1.578e-15
Identity = 40/96 (41.67%), Postives = 58/96 (60.42%), Query Frame = 0
Query:   67 CMACGESGTTRMILTKIPFFREVIVSSFECDSCGWTNNEVQFGGEIKERGCRFELKVMEPEDLNRQVIKSDTGSILIPELELEIPPKTQRGSVNTI 162
            C +C + G + M +T IP F+EVI+ +F C+ CG+  NEV+ GG I   G R  L V +   L+R V+KSD+  + IPE+ELE+   +  G   TI
Sbjct:  292 CHSCFKDGESMMCITDIPHFKEVIIMAFNCEHCGFKTNEVKAGGAIPPFGERMVLHVQDASYLDRDVLKSDSACVHIPEIELEMMSGSLGGLYTTI 387          
BLAST of EWM25274.1 vs. NCBI_GenBank
Match: gi|325188918|emb|CCA23447.1| (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 145.976 bits (367), Expect = 4.531e-38
Identity = 65/117 (55.56%), Postives = 89/117 (76.07%), Query Frame = 0
Query:   46 QDLSKTMGDDDNGIMEIPQSLCMACGESGTTRMILTKIPFFREVIVSSFECDSCGWTNNEVQFGGEIKERGCRFELKVMEPEDLNRQVIKSDTGSILIPELELEIPPKTQRGSVNTI 162
            +DL +     D  +ME   SLCM CG++G T ++LT IP+FRE+I+ SFEC+ CG+ N+EVQFGG I+E+GC+ E  V +  DLNRQ+IK+D+ +++ PELE EIPPKTQRGS+NTI
Sbjct:   34 EDLCEDQDGQDVTVME---SLCMHCGDNGVTTLLLTFIPYFREIILMSFECEHCGYRNSEVQFGGTIQEQGCKIEFVVEKASDLNRQIIKADSATVIFPELEFEIPPKTQRGSINTI 147          

HSP 2 Score: 93.2041 bits (230), Expect = 6.042e-19
Identity = 49/115 (42.61%), Postives = 71/115 (61.74%), Query Frame = 0
Query:   67 CMACGESGTTRMILTKIPFFREVIVSSFECDSCGWTNNEVQFGGEIKERGCRFELKV---MEPEDLNRQVIKSDTGSILIPELELEIPPKTQRGSVNTIGREGGREGGREGGKEG 178
            C +C   G TRM +T IP F+EVI+ +F C+ CG+  NEV+ GG I   G R  L+    ++PE LNR ++KSD+ S++IPELELE+   +  G   T+  EG  +  R+  +EG
Sbjct:  280 CHSCQAKGNTRMCVTDIPHFKEVIIMAFNCEHCGFRTNEVKAGGSIPSFGERITLRADISLDPEVLNRDILKSDSASVVIPELELELVHGSLGGLYTTV--EGLLDRIRQNIEEG 392          
BLAST of EWM25274.1 vs. NCBI_GenBank
Match: gi|953493318|emb|CEG44394.1| (zinc finger protein zpr1 [Plasmopara halstedii])

HSP 1 Score: 142.895 bits (359), Expect = 9.487e-37
Identity = 69/121 (57.02%), Postives = 89/121 (73.55%), Query Frame = 0
Query:   64 QSLCMACGESGTTRMILTKIPFFREVIVSSFECDSCGWTNNEVQFGGEIKERGCRFELKVMEPEDLNRQVIKSDTGSILIPELELEIPPKTQRGSVNTIGREGGREGGRE---GGKEGRRE 181
            +SLCM C E GTT+++LT IP+FREVI+ SFEC+ CG+ N+EVQFGG+++E+G R ELK+ +PEDLNRQ+IK D G I  P L+ EIP  TQRGS+NTI  EG  +   E     +E RRE
Sbjct:   53 ESLCMNCHEDGTTKLLLTMIPYFREVILMSFECEHCGFRNSEVQFGGKVQEQGARIELKLTQPEDLNRQLIKGDAGMIYFPSLDFEIPRGTQRGSINTI--EGVLQKAIEDLRASQEHRRE 171          

HSP 2 Score: 85.1149 bits (209), Expect = 4.100e-16
Identity = 46/123 (37.40%), Postives = 74/123 (60.16%), Query Frame = 0
Query:   59 IMEIPQSLCMACGESGTTRMILTKIPFFREVIVSSFECDSCGWTNNEVQFGGEIKERGCRFELKV---MEPEDLNRQVIKSDTGSILIPELELEIPPKTQRGSVNTIGREGGREGGREGGKEG 178
            +++IP   C AC   G + M +T IP F+EVI+ SF C++CG+  NEV+ GG I  +G R  LKV    +P  ++R ++K+D+  + IPE+ELE+   +  G   T+  EG  +  R+  ++G
Sbjct:  277 VIQIPAD-CYACQAPGVSCMCMTDIPHFKEVIIMSFNCEACGFKTNEVKAGGAIPPQGERITLKVDPHKDPHVMDRDILKADSACVNIPEIELEMAHGSLGGLYTTV--EGLLDKVRQNIEDG 396          
BLAST of EWM25274.1 vs. NCBI_GenBank
Match: gi|299470135|emb|CBN78164.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 143.28 bits (360), Expect = 1.002e-36
Identity = 67/105 (63.81%), Postives = 79/105 (75.24%), Query Frame = 0
Query:   58 GIMEIPQSLCMACGESGTTRMILTKIPFFREVIVSSFECDSCGWTNNEVQFGGEIKERGCRFELKVMEPEDLNRQVIKSDTGSILIPELELEIPPKTQRGSVNTI 162
            G  EI  S+CM CG  GTTRM+ TKIPFFREVI+SSFECD C W NNEV FGGE++E+GC FEL V   EDLNRQVIKSD  ++   E+E +IPP+ QRG V T+
Sbjct:   47 GADEITGSMCMVCGGDGTTRMLTTKIPFFREVILSSFECDDCHWRNNEVVFGGELQEKGCIFELTVNNAEDLNRQVIKSDFATVTFREMEFQIPPR-QRGEVTTV 150          

HSP 2 Score: 80.8777 bits (198), Expect = 1.249e-14
Identity = 43/112 (38.39%), Postives = 64/112 (57.14%), Query Frame = 0
Query:   67 CMACGESGTTRMILTKIPFFREVIVSSFECDSCGWTNNEVQFGGEIKERGCRFELKVMEPEDLNRQVIKSDTGSILIPELELEIPPKTQRGSVNTIGREGGREGGREGGKEG 178
            C ACG  G +   L +IP F+EV++ +F C+SCG+ ++EV+ GG I  +G  + L+ +  +D  R V+KSDT  + IP+LEL +   T      T+  EG  E  R    EG
Sbjct:  311 CPACGAPGHSLTCLAEIPHFKEVVIMAFNCESCGFKSSEVKGGGAIPPKGTAYTLEAVSKDDFRRDVLKSDTAVLEIPQLELVMEMGTLGSMYTTV--EGLLEKARTSLVEG 420          
BLAST of EWM25274.1 vs. NCBI_GenBank
Match: gi|1173941719|gb|OQR90832.1| (hypothetical protein ACHHYP_05198 [Achlya hypogyna])

HSP 1 Score: 143.665 bits (361), Expect = 1.903e-36
Identity = 68/144 (47.22%), Postives = 100/144 (69.44%), Query Frame = 0
Query:   24 PDVQGAVQGGTPQRGQSTPLILQD-----LSKTMGDDDNGIMEIPQSLCMACGESGTTRMILTKIPFFREVIVSSFECDSCGWTNNEVQFGGEIKERGCRFELKVMEPEDLNRQVIKSDTGSILIPELELEIPPKTQRGSVNTI 162
            P +Q  + G T    +   L ++D     +   + D+   + EI +SLC+ C ++G T+++LT+IP+FREVI+ SFEC+ CG+ N+E+QFGG I+E+G R EL+V   EDLNRQ+IKSDT S+  PE++ EIP KTQ+GS+NTI
Sbjct:  436 PAIQAPLGGTTTNTAERVHLDIEDGGAEEIFTDINDEVPNVTEI-ESLCINCHDNGMTKLLLTRIPYFREVILMSFECEHCGFKNSEIQFGGTIQEQGVRMELQVTTREDLNRQLIKSDTASVYFPEIDFEIPAKTQQGSINTI 578          

HSP 2 Score: 82.8037 bits (203), Expect = 3.415e-15
Identity = 43/100 (43.00%), Postives = 62/100 (62.00%), Query Frame = 0
Query:   67 CMACGESGTTRMILTKIPFFREVIVSSFECDSCGWTNNEVQFGGEIKERGCRFELKVMEPED----LNRQVIKSDTGSILIPELELEIPPKTQRGSVNTI 162
            C AC + G + M +T IP F+EVI+ +F C+ CG+  NEV+ GG I   G R  L+V  P D    ++R ++KSD+ S+ IPELELE+ P +  G   T+
Sbjct:  714 CHACYKDGESMMCVTDIPHFKEVIIMAFNCEHCGFKTNEVKAGGAIPPFGERIVLRV--PGDDASFMDRDILKSDSASVSIPELELEMMPGSLGGLYTTL 811          
BLAST of EWM25274.1 vs. NCBI_GenBank
Match: gi|470445765|ref|XP_004339882.1| (nucleolar zincfinger protein [Acanthamoeba castellanii str. Neff] >gi|440796763|gb|ELR17869.1| nucleolar zincfinger protein [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 139.813 bits (351), Expect = 6.698e-36
Identity = 66/118 (55.93%), Postives = 85/118 (72.03%), Query Frame = 0
Query:   64 QSLCMACGESGTTRMILTKIPFFREVIVSSFECDSCGWTNNEVQFGGEIKERGCRFELKVMEPEDLNRQVIKSDTGSILIPELELEIPPKTQRGSVNTIGREGGREGGREGGKEGRRE 181
            +SLCM C E+G T ++LTKIP F+E+I+ SF C  CG+ NNE+QFGG I ERGC ++L V +  DLNRQV+KSD  SI IPEL+ EIPP TQ+G++NTI  EG      EG  +G+ E
Sbjct:   29 ESLCMNCHENGMTNLLLTKIPSFKEIILMSFHCKHCGFRNNEIQFGGSIAERGCIYKLVVTDKGDLNRQVVKSDAASIYIPELDFEIPPLTQKGTLNTI--EGFLMQAIEGLNQGQEE 144          

HSP 2 Score: 102.064 bits (253), Expect = 4.906e-22
Identity = 46/104 (44.23%), Postives = 71/104 (68.27%), Query Frame = 0
Query:   59 IMEIPQSLCMACGESGTTRMILTKIPFFREVIVSSFECDSCGWTNNEVQFGGEIKERGCRFELKVMEPEDLNRQVIKSDTGSILIPELELEIPPKTQRGSVNTI 162
            +M+ P++ C  CG+ G TRM +  IP F++VI+ +F C++CG+ +NEV+ GG I  +GC+  L++   +DLNR V+KS+T  + IPELEL + P T  G  +TI
Sbjct:  267 VMKFPET-CGLCGKRGETRMCVAHIPHFKDVIIMAFMCEACGYKSNEVKSGGAIAPKGCKITLRLTNADDLNRDVLKSETAGLEIPELELGLVPGTLGGKFSTI 369          
The following BLAST results are available for this feature:
BLAST of EWM25274.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107006|gb|EWM25274.1|1.115e-126100.00zinc finger protein zpr1 [Nannochloropsis gaditana... [more]
gi|698781441|ref|XP_009823764.1|2.811e-3944.83hypothetical protein, variant 1 [Aphanomyces astac... [more]
gi|698781437|ref|XP_009823762.1|3.142e-3944.83hypothetical protein, variant 2 [Aphanomyces astac... [more]
gi|635365349|emb|CCI46297.1|4.392e-3957.14unnamed protein product [Albugo candida][more]
gi|698781435|ref|XP_009823761.1|3.118e-3844.83hypothetical protein H257_01984 [Aphanomyces astac... [more]
gi|325188918|emb|CCA23447.1|4.531e-3855.56conserved hypothetical protein [Albugo laibachii N... [more]
gi|953493318|emb|CEG44394.1|9.487e-3757.02zinc finger protein zpr1 [Plasmopara halstedii][more]
gi|299470135|emb|CBN78164.1|1.002e-3663.81conserved unknown protein [Ectocarpus siliculosus][more]
gi|1173941719|gb|OQR90832.1|1.903e-3647.22hypothetical protein ACHHYP_05198 [Achlya hypogyna... [more]
gi|470445765|ref|XP_004339882.1|6.698e-3655.93nucleolar zincfinger protein [Acanthamoeba castell... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5412rna5412Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications