rna5411, rna5411 (mRNA) Nannochloropsis gaditana

Overview
Namerna5411
Unique Namerna5411
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1223
Alignment locationCM002465.1:938836..939428 +

Link to JBrowse

Properties
Property NameValue
Productmethyltransferase
Orig transcript idgnl|cribi|Naga_102327g1.5092.mrna
Orig protein idgnl|cribi|Naga_102327g1.5092
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:938836..939428 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102327g1gene5233Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5411rna5411-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25275.1cds5398Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5411 ID=rna5411|Name=rna5411|organism=Nannochloropsis gaditana|type=mRNA|length=1223bp
CGGAGAAGCTGGGAAGGCGAATGGGCTCGGTCGTGAGGGAGGAGGGTCAT
CCTCAAGGTTAAAATGGCGTCATCCGGAATGGAATTGCGTCGTGGAAACG
CCACGGGGGAGAAGGGGGTGGAAAAGGAGGGAGGGCGAGGGGGAGGGGGA
GTGAGGGAGATGGTGTGATGCTGTTCGGGACTGTCGTTTATAGGCGTAAG
AAAGCATTAAATTTAAATAGGTAGGGGCGGAGGAGGCGGGAGAGGAACTG
GAGGGGGGAGGAGAGAGGAGAAGGAGACTAGCGCCCTCTCAGGACGGATA
AAATGGGGGAAGATATCGGAGTTGAAGAAACCTTAACATACCCCTTTGGG
TGCAAGGAGGGACATGGCGGTAAAGGGAAGAAACCTCGGGCGAGCGACCC
GTGGGAAGGAAGGCAGGGATGGGTCCTTGAAGAGACCTTAACTTCCGATG
CCATCGAGTTTGACGGTTGATGATGGGCCTTGCCCGCAGGCCCGGCGTAG
AGCATCCACCTCCAAAGCCATCACCTTCCATGCCCATCACCCTACCTCCC
CGAAGCACGTCGTTTTGTCGACGCGCCCCGTGCAACGTGAATGTTTGATC
CTGACGATGATAAAGTCTAACAAAGAAAGTAACGGCCAGGGCCTTCTCCC
TTCTCCCCTCCTCCTGAGGCCGCTCGCGCTCATTCGTCTTCCGTTTCCTT
CCCTCCCTTTCCTTCCTTCTTCCCGTCATTCCCCCCAGGCCATGTCTTCC
TCCAACTCCTCCTCCTTATCCTCCTCCTCCTCCACCACCACCACCTTACG
TCGTCGCCTTCTTCCCTCCCCATCCTCCTTCCTCCTCTTTTTCCCCCTCC
TCCTCACCGAGGACAGGACTCACCAAATGCCATTCACTTGCTCCGCTTTC
GCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCCTCCTCCTCCTCCTCCTTC
TCCTCCTCTCCCTCCTCCTCCTCCACCTCCTCCTCCCCCCCTCCCTCCTC
CTCCTCCTTCTTCTCCTCCCTCTCTCGCCTATACGCCCCTCCTCCTCTCT
TCGCCGGCGTCGAACCTTCCTCCCCCATTCCCTTCTCCTCCCGACAAATG
TCAGCGGTCCGGGCCCTCGAGGCCGAGAGACCTTTGAAAGACCGACTTTT
TACCGATTTTTTATCGGGTCATTTCGCCGGTCCAGAAGCCATGGAGCAGG
CGCGTGCCAGGAGGGAGGGAGGG
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protein sequence of rna5411

>rna5411-protein ID=rna5411-protein|Name=rna5411|organism=Nannochloropsis gaditana|type=polypeptide|length=183bp
MNPEDRRGRREKVTQVLILGSGMDTRAWRLPLPDVTVIEVDVPAVVRAKE
EVLKRLQEKEGQLPPPSPSSSPPEISPPSSLTQLTVKARIVIPANFTATT
PPSLPSSPSSWVQAVRAGLPAPEKPLVILLEGLLMYLPEDAVKEVLTQAG
RMGEAPGSVIGISLVDRESVKMGMRRRRGPGFF
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mRNA from alignment at CM002465.1:938836..939428+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5411 ID=rna5411|Name=rna5411|organism=Nannochloropsis gaditana|type=mRNA|length=593bp|location=Sequence derived from alignment at CM002465.1:938836..939428+ (Nannochloropsis gaditana)
ATGAATCCagaagacaggaggggaagacgagagaAGGTTACACAGGTGCT
CATCTTGGGGAGTGGCATGGACACTCGTGCATggcgcctgcccctcccgg
aCGTGACGGTGATTGAAGTGGATGTTCCCGCGGTGGtgcgggcgaaggag
gaggttctgAAGCGTCtccaggagaaggaaggacagtTACCACCACCATC
GCCATCGTCATCACCCCCCGAAATcagccctccatcctccttaACTCAGC
TCACGGTCAAAGCCCGCATCGTCATTCCCGCCAATTTTACggccaccacc
cctccctccctcccgtcctccccctcttcctgggTCCAAGCCGTCCGCGC
CGGGCTTCCCGCCCCAGAGAAgcccctcgtcatccttcTAGAAGGTCTGC
TCATGTACCTGCCCGAGGACGCCGTGAAGGAGGTGCTGACGCAGGCGGGC
CGGATGGGCGAGGCTCCGGGTAGCGTGATTGGGATCAGCCTGGTGGACCG
GGAAAGCGTGAAAAGTGCGCGAaactcgtcctctcccttgcgGCAAACCT
GGCAGTGGGGAtgcgacgaagaagaggcccGGGCTTTTTTTGA
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Coding sequence (CDS) from alignment at CM002465.1:938836..939428+

>rna5411 ID=rna5411|Name=rna5411|organism=Nannochloropsis gaditana|type=CDS|length=1104bp|location=Sequence derived from alignment at CM002465.1:938836..939428+ (Nannochloropsis gaditana)
ATGAATCCagaagacaggaggggaagacgagagaAGGTTACACAGGTGCT
CATCTTGGGGAGTGGCATGGACACTCGTGCATggcgcctgcccctcccgg
aCGTGACGGTGATTGAAGTGGATGTTCCCGCGGTGGtgcgggcgaaggag
gaggttctgAAGCGTCtccaggagaaggaaggacagtTACCACCACCATC
GCCATCGTCATCACCCCCCGAAATcagccctccatcctccttaACTCAGC
TCACGGTCAAAGCCCGCATCGTCATTCCCGCCAATTTTACggccaccacc
cctccctccctcccgtcctccccctcttcctgggTCCAAGCCGTCCGCGC
CGGGCTTCCCGCCCCAGAGAAgcccctcgtcatccttcTAGAAGGTCTGC
TCATGTACCTGCCCGAGGACGCCGTGAAGGAGGTGCTGACGCAGGCGGGC
CGGATGGGCGAGGCTCCGGGTAGCGTGATTGGGATCAGCCTGGTGGACCG
GGAAAGCGTGAAAATGGGGAtgcgacgaagaagaggcccGGGCTTTTTTT
GAATGAATCCagaagacaggaggggaagacgagagaAGGTTACACAGGTG
CTCATCTTGGGGAGTGGCATGGACACTCGTGCATggcgcctgcccctccc
ggaCGTGACGGTGATTGAAGTGGATGTTCCCGCGGTGGtgcgggcgaagg
aggaggttctgAAGCGTCtccaggagaaggaaggacagtTACCACCACCA
TCGCCATCGTCATCACCCCCCGAAATcagccctccatcctccttaACTCA
GCTCACGGTCAAAGCCCGCATCGTCATTCCCGCCAATTTTACggccacca
cccctccctccctcccgtcctccccctcttcctgggTCCAAGCCGTCCGC
GCCGGGCTTCCCGCCCCAGAGAAgcccctcgtcatccttcTAGAAGGTCT
GCTCATGTACCTGCCCGAGGACGCCGTGAAGGAGGTGCTGACGCAGGCGG
GCCGGATGGGCGAGGCTCCGGGTAGCGTGATTGGGATCAGCCTGGTGGAC
CGGGAAAGCGTGAAAATGGGGAtgcgacgaagaagaggcccGGGCTTTTT
TTGA
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Synonyms
Publications