rna5409, rna5409 (mRNA) Nannochloropsis gaditana

Overview
Namerna5409
Unique Namerna5409
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length604
Alignment locationCM002465.1:935700..936244 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101577g1.9731.mrna
Orig protein idgnl|cribi|Naga_101577g1.9731
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:935700..936244 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101577g1gene5231Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5409rna5409-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25277.1cds5396Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5409 ID=rna5409|Name=rna5409|organism=Nannochloropsis gaditana|type=mRNA|length=604bp
GTCATGTCCACTGCAAGAGCGAACGCGTAGCGACGCGCGGGAGCGGCTTG
GAGACGCTGGGGGCAATATATCCAGCGAAACCATTTTTACAGACACGGAC
ATGTGCGGTCAAGGCATCTCGGGGACGCTCGTGTCGTGGGAAGGTGGTCG
TTGGACGTAAAGGGTATTGAAAGACTGTGACGAGAAGTTAAAACGTGTTA
TTGCCGGTTTACCTCCCCACGACGACGACGGACGTGAACATAAGCTCACC
CCATGGCTTTGAGTTCCTTACTCTACCATCTTGACGGCGCGAGCACGGTG
CAACATGAGTGTGTCGAAGAACTGCACCTTTTCGGACGCGTGGCTTTTTC
CCGGTTCTTGGCAAGCAGGAAGCTTATGGACGGAAAGCCCCGAGGGGTAG
ATGCATTGAAGGCGCTGGCAATGCACTTTGCTGTAATATGTTATATACAA
CATGAAGTCCTTGCATTGTGGTGTGTGTATGTCACCGGTAGCACACACCA
TGTGGGATCAAACCGCGTGTATTCGGCTAAGATAGCTGAAAGTGGCAGTG
ACCAACGAACAGCATGAATTAAATGGACAAAACAAAGCACACGACGCGTG
ACGC
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protein sequence of rna5409

>rna5409-protein ID=rna5409-protein|Name=rna5409|organism=Nannochloropsis gaditana|type=polypeptide|length=144bp
MGLPARMKNISDFVPPPPETQKAPLTRTLLVVGLSPASFKDEVLKHLWPK
KYQPKLRLVWLNRDDPPPSLPPPWGWHETHRKPVESLLAPENVSEAGREE
DIAQAWGDSIFVVMGAGCSVQDFRHLKVAWANAYPFDKELLQVR
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mRNA from alignment at CM002465.1:935700..936244+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5409 ID=rna5409|Name=rna5409|organism=Nannochloropsis gaditana|type=mRNA|length=545bp|location=Sequence derived from alignment at CM002465.1:935700..936244+ (Nannochloropsis gaditana)
CAACCGTTACAACCCTGATGCGACGTgcacaacaacagcagccaTACCGC
CTCGGAGAAATcagaggacggaggcagcggccatgGCTGGCGCGCACATT
TGGAGTTCAGAATGGGCCTACCTGCCAGAATGAAGAACATATCGGATTtc
gtgcctcccccccccgagacCCAGAAAGCTCCGCTCACCCGTACGCTTCT
GGTCGTTGGCCTTTCCCCGGCTTCTTTCAAGGATGAAGTCCTCAAGCATT
TGTGGCCGAAGAAGTACCAGCCAAAGTTGCGCCTCGTCTGGTTGAACCGT
GatgatcctcctccctcccttcctccaccgtggGGATGGCACGAGACCCA
TCGAAAACCCGTCGAATCCTTGCTCGCACCCGAAAACGTGtcggaggcgg
gaagagaggaagataTCGCCCAAGCCTGGGGAGACTCGATATTCGTGGTG
ATGGGTGCCGGCTGCTCCGTTCAAGATTTTCGACATTTGAAAGTGGCATG
GGCCAATGCCTACCCCTTCGACAAGGAGCTTCTCCAGGTGAGGGA
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Coding sequence (CDS) from alignment at CM002465.1:935700..936244+

>rna5409 ID=rna5409|Name=rna5409|organism=Nannochloropsis gaditana|type=CDS|length=434bp|location=Sequence derived from alignment at CM002465.1:935700..936244+ (Nannochloropsis gaditana)
ATGGGCCTACCTGCCAGAATGAAGAACATATCGGATTtcgtgcctccccc
ccccgagacCCAGAAAGCTCCGCTCACCCGTACGCTTCTGGTCGTTGGCC
TTTCCCCGGCTTCTTTCAAGGATGAAGTCCTCAAGCATTTGTGGCCGAAG
AAGTACCAGCCAAAGTTGCGCCTCGTCTGGTTGAACCGTGatgatcctcc
tccctcccttcctccaccgtggGGATGGCACGAGACCCATCGAAAACCCG
TCGAATCCTTGCTCGCACCCGAAAACGTGtcggaggcgggaagagaggaa
gataTCGCCCAAGCCTGGGGAGACTCGATATTCGTGGTGATGGGTGCCGG
CTGCTCCGTTCAAGATTTTCGACATTTGAAAGTGGCATGGGCCAATGCCT
ACCCCTTCGACAAGGAGCTTCTCCAGGTGAGGGA
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Synonyms
Publications