rna5407, rna5407 (mRNA) Nannochloropsis gaditana

Overview
Namerna5407
Unique Namerna5407
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length859
Alignment locationCM002465.1:934278..935047 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101577g3.9733.mrna
Orig protein idgnl|cribi|Naga_101577g3.9733
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:934278..935047 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101577g3gene5229Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5407rna5407-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25279.1cds5394Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5407 ID=rna5407|Name=rna5407|organism=Nannochloropsis gaditana|type=mRNA|length=859bp
GTATGTAGACACACATTGAAACCCACGCCCTGTAACCCCCCGATCCTTTT
AATGTCAACAGTGCGCGTTGTTATCATGTATCTTGCTATCCCTTTTAGGG
CCGAAGTTGTCCGTGTTCAGGCCTCTTCCTTCTAAGCCCTACGCGGCACC
GCCTCCCCCCCTCTCAACAGCAACACCTGTAGTATCCATGGAGGCTATCA
CGCCGCCAAAGCCCGGCACGGCCTGGCGAAGAAGAAGAGGAAGGAGAATA
GGGCGTTTGTATGGCCATGTATCTCTGTCGGCTGTGATTCCCTTTTTGCT
GCTGGTCCTGGGGTTCTTTGCCCTCCTTCTCCCCTCCCTGTGCCACGGCG
CAGCGGCAGGACCATTTGGCGGTCAAAAAACAAAAAAACAGAAACCTGTC
GTTTCTCTTACGTCGGAGGAATTGCTGGATCATTTGGAGGAGTGGAATAC
GGACCTGGCCATATTTTTTTACGCCCCGTGGTGTCCATATTGCAAGCTGG
TAGGGCCCTATTGGGACATGCTGGGAGAGTGGCACCTGGCGCAAACCACT
CCCTCCCTCCTCATCACCCGCTTCGACTGCGAGCAGGACGCGTTGGCCAT
GGATATATGCATGTACATGGGGGTCACGCAGTACCCGACCATCCAATATT
TGGGCTACGGGTCTTACTACCAGAACCTTCTGTCGTGGTTGTTTCGGCAC
CCGGGGAGCAACGTGGACAGGACGGTGTTTTTCGAAGGGGTGCCAGACCC
GGAGATATTGAAGGACTGGACGCTCATGATGAAGGGGATCAGCGGCTGGC
ACCGGTGGAGGGAGGGGTGGAGGAAGAGAACAAAATCTTGGAGGCGGCCG
TGCGAATGA
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protein sequence of rna5407

>rna5407-protein ID=rna5407-protein|Name=rna5407|organism=Nannochloropsis gaditana|type=polypeptide|length=181bp
MDHPKLRGGRAALRAACRLSDDHHQTQGAQRKGVATGPGHTVRRPGRGYA
QAGCGSCLGPRREGGRWALRDEQVQSTRQRHVERGRKVLGRGKGEVGGGH
GGVVYILGADREPVPVLVIMRKHRVADRDEKDTDSAQAALAVARVMAPPG
GISSLSRTIPSPNKLGMKKAQGKYCNIRRNK
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mRNA from alignment at CM002465.1:934278..935047+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5407 ID=rna5407|Name=rna5407|organism=Nannochloropsis gaditana|type=mRNA|length=770bp|location=Sequence derived from alignment at CM002465.1:934278..935047+ (Nannochloropsis gaditana)
ATGGGTGGGTGGGGTGCACTGACGCCCTCGACCTTCTCTTGACATGCTCG
GGCTTTTCTCGGGCTTCCTCGGGCTTTTCTCTGACGCAGATCATCCGAAG
CTtcgtggaggccgtgctgCGCTACGGGCTGCCTGTCGACTTTCTGACGA
CCATCACCAGGTAGGGCGCCGTAAACAATTGCGGTCAATTCAGGTCGTCG
CtacctctctttcctcctccttcatgatGGGCCCGTGTATTTCGCCTcac
gaccctccctccctccctccctccctccctccctccctccctcgtgtaGA
CCCAAGGCGCGCAAAGAAAAGGCGTTGCAACAGGCCCTGGACACACTGTA
CGCCGACCTGGCCGTGGATATGCCCAAGCTGGGTGCGGAAGCTGCCTTGG
ACCtcgacgagaaggaggacgatgggCCCTGCGTGATGAACAAGTTCAAT
CCACGCGCCAACGCCACGTagagaggggcaggaaggtcttgggaaggggg
aaaggggaagtcGGTGGGGGGCACGGCGGCGTGGTATACATACTGGGAGC
GGACAGGGAGCCGGTGCCTGTTCTTGTCATAATGCGGAAGCATCGTGTTG
CTGACAGAGACGAAAAAGATACTGACAGTGCCCAGGCGGCTTTAGCTGTC
GCTAGGGTCATGGCACCCCCTGGTGGtatttcctctctctctcgaaCAAT
TCCCTCTCCAAATAAGTTGGGGATGAAGAAAGCGCAGGGCAAATATTGCA
ACATTCGAAGAAACAAATGA
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Coding sequence (CDS) from alignment at CM002465.1:934278..935047+

>rna5407 ID=rna5407|Name=rna5407|organism=Nannochloropsis gaditana|type=CDS|length=1638bp|location=Sequence derived from alignment at CM002465.1:934278..935047+ (Nannochloropsis gaditana)
ATGGATCATCCGAAGCTtcgtggaggccgtgctgCGCTACGGGCTGCCTG
TCGACTTTCTGACGACCATCACCAGACCCAAGGCGCGCAAAGAAAAGGCG
TTGCAACAGGCCCTGGACACACTGTACGCCGACCTGGCCGTGGATATGCC
CAAGCTGGGTGCGGAAGCTGCCTTGGACCtcgacgagaaggaggacgatg
ggCCCTGCGTGATGAACAAGTTCAATCCACGCGCCAACGCCACGTagaga
ggggcaggaaggtcttgggaagggggaaaggggaagtcGGTGGGGGGCAC
GGCGGCGTGGTATACATACTGGGAGCGGACAGGGAGCCGGTGCCTGTTCT
TGTCATAATGCGGAAGCATCGTGTTGCTGACAGAGACGAAAAAGATACTG
ACAGTGCCCAGGCGGCTTTAGCTGTCGCTAGGGTCATGGCACCCCCTGGT
GGtatttcctctctctctcgaaCAATTCCCTCTCCAAATAAGTTGGGGAT
GAAGAAAGCGCAGGGCAAATATTGCAACATTCGAAGAAACAAATGAATGG
ATCATCCGAAGCTtcgtggaggccgtgctgCGCTACGGGCTGCCTGTCGA
CTTTCTGACGACCATCACCAGACCCAAGGCGCGCAAAGAAAAGGCGTTGC
AACAGGCCCTGGACACACTGTACGCCGACCTGGCCGTGGATATGCCCAAG
CTGGGTGCGGAAGCTGCCTTGGACCtcgacgagaaggaggacgatgggCC
CTGCGTGATGAACAAGTTCAATCCACGCGCCAACGCCACGTagagagggg
caggaaggtcttgggaagggggaaaggggaagtcGGTGGGGGGCACGGCG
GCGTGGTATACATACTGGGAGCGGACAGGGAGCCGGTGCCTGTTCTTGTC
ATAATGCGGAAGCATCGTGTTGCTGACAGAGACGAAAAAGATACTGACAG
TGCCCAGGCGGCTTTAGCTGTCGCTAGGGTCATGGCACCCCCTGGTGGta
tttcctctctctctcgaaCAATTCCCTCTCCAAATAAGTTGGGGATGAAG
AAAGCGCAGGGCAAATATTGCAACATTCGAAGAAACAAATGAATGGATCA
TCCGAAGCTtcgtggaggccgtgctgCGCTACGGGCTGCCTGTCGACTTT
CTGACGACCATCACCAGACCCAAGGCGCGCAAAGAAAAGGCGTTGCAACA
GGCCCTGGACACACTGTACGCCGACCTGGCCGTGGATATGCCCAAGCTGG
GTGCGGAAGCTGCCTTGGACCtcgacgagaaggaggacgatgggCCCTGC
GTGATGAACAAGTTCAATCCACGCGCCAACGCCACGTagagaggggcagg
aaggtcttgggaagggggaaaggggaagtcGGTGGGGGGCACGGCGGCGT
GGTATACATACTGGGAGCGGACAGGGAGCCGGTGCCTGTTCTTGTCATAA
TGCGGAAGCATCGTGTTGCTGACAGAGACGAAAAAGATACTGACAGTGCC
CAGGCGGCTTTAGCTGTCGCTAGGGTCATGGCACCCCCTGGTGGtatttc
ctctctctctcgaaCAATTCCCTCTCCAAATAAGTTGGGGATGAAGAAAG
CGCAGGGCAAATATTGCAACATTCGAAGAAACAAATGA
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Synonyms
Publications