rna5406, rna5406 (mRNA) Nannochloropsis gaditana

Overview
Namerna5406
Unique Namerna5406
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length264
Alignment locationCM002465.1:931484..932601 -

Link to JBrowse

Properties
Property NameValue
ProductThioredoxin domain protein
Orig transcript idgnl|cribi|Naga_101428g1.1393.mrna
Orig protein idgnl|cribi|Naga_101428g1.1393
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:931484..932601 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101428g1gene5228Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5406rna5406-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25280.1cds5393Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5406 ID=rna5406|Name=rna5406|organism=Nannochloropsis gaditana|type=mRNA|length=264bp
ATGGAAGTCTTCCACACCCTACGTTCCAACTCCTCCCCCGCCTCCCCCTC
CTCGGCCCCTCCCTCCCGCCCTCCCTCCCGCTTTCCCTCCCTTCTTGAGG
AGGAGGGAGAGAGGGAGGCCATCGTGGACGAGGAAGCTTCCTTCTCCTCC
TCCCCTTCCTCCTCCTCCCTTCCCTCCTTCCTCCTCACTCCTTACGACCG
CCTGCGGTACGTCACCCTCATGATCCGGTACTGCCCCCAGGGTCTCTACG
ACTACCTGCGGTAA
back to top

protein sequence of rna5406

>rna5406-protein ID=rna5406-protein|Name=rna5406|organism=Nannochloropsis gaditana|type=polypeptide|length=223bp
MEAITPPKPGTAWRRRRGRRIGRLYGHVSLSAVIPFLLLVLGFFALLLPS
LCHGAAAGPFGGQKTKKQKPVVSLTSEELLDHLEEWNTDLAIFFYAPWCP
YCKLVGPYWDMLGEWHLAQTTPSLLITRFDCEQDALAMDICMYMGVTQYP
TIQYLGYGSYYQNLLSWLFRHPGSNVDRTVFFEGVPDPEILKDWTLMMKG
ISGWHRWREGWRKRTKSWRRPCE
back to top

mRNA from alignment at CM002465.1:931484..932601-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5406 ID=rna5406|Name=rna5406|organism=Nannochloropsis gaditana|type=mRNA|length=1118bp|location=Sequence derived from alignment at CM002465.1:931484..932601- (Nannochloropsis gaditana)
GTATGTAGACACACATTGAAACCCACGCCCTGTAACCCCCCGATCCTTTT
AATGTCAACAGTGCGCGTTGTTATCATGTATCTTGCTATCCCTTTTAGGG
CCGAAGTTGTCCGTGTTCAGGCCTCTTCCTTCTAAGCCCTACGCGGCACC
GCCTCCCCCCCTCTCAACAGCAACACCTGTAGTATCCATGGAGGCTATCA
CGCCGCCAAAGCCCGGCACGGCCTGGCGAAGAAGAAGAGGAAGGAGAATA
GGGCGTTTGTATGGCCATGTATCTCTGTCGGCTGTGATTCCCTTTTTGCT
GCTGGTCCTGGGGTTCTTTGCCCTCCTTCTCCCCTCCCTGTGCCACGGCG
CAGCGGCAGGACCATTTGGCGGTCAAAAAACAAAAAAACAGAAACCTGTC
GTTTCTCTTACGTCGGAGGAATTGCTGGATCATTTGGAGGAGTGGAATAC
GGACCTGGCCATATTTTTTTACGCCCCGTGGTGTCCATATTGCAAGTAAG
AAAGGAAGGGGGGGGATGAGTGGCACTGTTGCATGCAGCAGAGCCGCAGG
TTGCATAGACCGTTTTTGGGAATAAAGCATGGGACAACAAAGAAACCCCT
TACTTATTTCCTATACGTACCTCCCTTTTCCTGCTTCCTTTCTCCTTCCC
TCTTCCTCGTTCTGATCAGGCTGGTAGGGCCCTATTGGGACATGCTGGGA
GAGTGGCACCTGGCGCAAACCACTCCCTCCCTCCTCATCACCCGCTTCGA
CTGCGAGCAGGACGCGTTGGCCATGGATATATGCATGTACATGGGGGTCA
CGCAGTACCCGACCATCCAATATTTGGGCTACGGGTCTTACTACCAGAAC
CTTCTGTCGTGGTTGTTTCGGCACCCGGGGAGCAACGTGGACAGGACGGT
GTTTTTCGAAGGGGTGCCAGACCCGGAGATATTGAAGGACTGGACGCTCA
TGATGAAGGGGATCAGCGGCTGGCACCGGTGGAGGGAGGGGTGGAGGTGG
GGAGGGAGAAAGGGGAAGAGGGAGGTGATGGAGGAGAGGAGGGAGCGGCG
GCGGCTGGAACGGGCGGTGCTGGAACTTAAGGAAGAGAACAAAATCTTGG
AGGCGGCCGTGCGAATGA
back to top

Coding sequence (CDS) from alignment at CM002465.1:931484..932601-

>rna5406 ID=rna5406|Name=rna5406|organism=Nannochloropsis gaditana|type=CDS|length=2016bp|location=Sequence derived from alignment at CM002465.1:931484..932601- (Nannochloropsis gaditana)
GAAGAGAACAAAATCTTGGAGGCGGCCGTGCGAATGAGCTGGTAGGGCCC
TATTGGGACATGCTGGGAGAGTGGCACCTGGCGCAAACCACTCCCTCCCT
CCTCATCACCCGCTTCGACTGCGAGCAGGACGCGTTGGCCATGGATATAT
GCATGTACATGGGGGTCACGCAGTACCCGACCATCCAATATTTGGGCTAC
GGGTCTTACTACCAGAACCTTCTGTCGTGGTTGTTTCGGCACCCGGGGAG
CAACGTGGACAGGACGGTGTTTTTCGAAGGGGTGCCAGACCCGGAGATAT
TGAAGGACTGGACGCTCATGATGAAGGGGATCAGCGGCTGGCACCGGTGG
AGGGAGGGGTGGAGATGGAGGCTATCACGCCGCCAAAGCCCGGCACGGCC
TGGCGAAGAAGAAGAGGAAGGAGAATAGGGCGTTTGTATGGCCATGTATC
TCTGTCGGCTGTGATTCCCTTTTTGCTGCTGGTCCTGGGGTTCTTTGCCC
TCCTTCTCCCCTCCCTGTGCCACGGCGCAGCGGCAGGACCATTTGGCGGT
CAAAAAACAAAAAAACAGAAACCTGTCGTTTCTCTTACGTCGGAGGAATT
GCTGGATCATTTGGAGGAGTGGAATACGGACCTGGCCATATTTTTTTACG
CCCCGTGGTGTCCATATTGCAAGAAGAGAACAAAATCTTGGAGGCGGCCG
TGCGAATGAGCTGGTAGGGCCCTATTGGGACATGCTGGGAGAGTGGCACC
TGGCGCAAACCACTCCCTCCCTCCTCATCACCCGCTTCGACTGCGAGCAG
GACGCGTTGGCCATGGATATATGCATGTACATGGGGGTCACGCAGTACCC
GACCATCCAATATTTGGGCTACGGGTCTTACTACCAGAACCTTCTGTCGT
GGTTGTTTCGGCACCCGGGGAGCAACGTGGACAGGACGGTGTTTTTCGAA
GGGGTGCCAGACCCGGAGATATTGAAGGACTGGACGCTCATGATGAAGGG
GATCAGCGGCTGGCACCGGTGGAGGGAGGGGTGGAGATGGAGGCTATCAC
GCCGCCAAAGCCCGGCACGGCCTGGCGAAGAAGAAGAGGAAGGAGAATAG
GGCGTTTGTATGGCCATGTATCTCTGTCGGCTGTGATTCCCTTTTTGCTG
CTGGTCCTGGGGTTCTTTGCCCTCCTTCTCCCCTCCCTGTGCCACGGCGC
AGCGGCAGGACCATTTGGCGGTCAAAAAACAAAAAAACAGAAACCTGTCG
TTTCTCTTACGTCGGAGGAATTGCTGGATCATTTGGAGGAGTGGAATACG
GACCTGGCCATATTTTTTTACGCCCCGTGGTGTCCATATTGCAAGAAGAG
AACAAAATCTTGGAGGCGGCCGTGCGAATGAGCTGGTAGGGCCCTATTGG
GACATGCTGGGAGAGTGGCACCTGGCGCAAACCACTCCCTCCCTCCTCAT
CACCCGCTTCGACTGCGAGCAGGACGCGTTGGCCATGGATATATGCATGT
ACATGGGGGTCACGCAGTACCCGACCATCCAATATTTGGGCTACGGGTCT
TACTACCAGAACCTTCTGTCGTGGTTGTTTCGGCACCCGGGGAGCAACGT
GGACAGGACGGTGTTTTTCGAAGGGGTGCCAGACCCGGAGATATTGAAGG
ACTGGACGCTCATGATGAAGGGGATCAGCGGCTGGCACCGGTGGAGGGAG
GGGTGGAGATGGAGGCTATCACGCCGCCAAAGCCCGGCACGGCCTGGCGA
AGAAGAAGAGGAAGGAGAATAGGGCGTTTGTATGGCCATGTATCTCTGTC
GGCTGTGATTCCCTTTTTGCTGCTGGTCCTGGGGTTCTTTGCCCTCCTTC
TCCCCTCCCTGTGCCACGGCGCAGCGGCAGGACCATTTGGCGGTCAAAAA
ACAAAAAAACAGAAACCTGTCGTTTCTCTTACGTCGGAGGAATTGCTGGA
TCATTTGGAGGAGTGGAATACGGACCTGGCCATATTTTTTTACGCCCCGT
GGTGTCCATATTGCAA
back to top
Synonyms
Publications