EWM25280.1, cds5393 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25280.1 vs. NCBI_GenBank
Match: gi|585107017|gb|EWM25280.1| (Thioredoxin domain protein [Nannochloropsis gaditana]) HSP 1 Score: 463.381 bits (1191), Expect = 3.358e-165 Identity = 223/223 (100.00%), Postives = 223/223 (100.00%), Query Frame = 0
Query: 1 MEAITPPKPGTAWRRRRGRRIGRLYGHVSLSAVIPFLLLVLGFFALLLPSLCHGAAAGPFGGQKTKKQKPVVSLTSEELLDHLEEWNTDLAIFFYAPWCPYCKLVGPYWDMLGEWHLAQTTPSLLITRFDCEQDALAMDICMYMGVTQYPTIQYLGYGSYYQNLLSWLFRHPGSNVDRTVFFEGVPDPEILKDWTLMMKGISGWHRWREGWRKRTKSWRRPCE 223
MEAITPPKPGTAWRRRRGRRIGRLYGHVSLSAVIPFLLLVLGFFALLLPSLCHGAAAGPFGGQKTKKQKPVVSLTSEELLDHLEEWNTDLAIFFYAPWCPYCKLVGPYWDMLGEWHLAQTTPSLLITRFDCEQDALAMDICMYMGVTQYPTIQYLGYGSYYQNLLSWLFRHPGSNVDRTVFFEGVPDPEILKDWTLMMKGISGWHRWREGWRKRTKSWRRPCE
Sbjct: 1 MEAITPPKPGTAWRRRRGRRIGRLYGHVSLSAVIPFLLLVLGFFALLLPSLCHGAAAGPFGGQKTKKQKPVVSLTSEELLDHLEEWNTDLAIFFYAPWCPYCKLVGPYWDMLGEWHLAQTTPSLLITRFDCEQDALAMDICMYMGVTQYPTIQYLGYGSYYQNLLSWLFRHPGSNVDRTVFFEGVPDPEILKDWTLMMKGISGWHRWREGWRKRTKSWRRPCE 223
BLAST of EWM25280.1 vs. NCBI_GenBank
Match: gi|553191134|ref|XP_005855328.1| (hypothetical protein NGA_0137200, partial [Nannochloropsis gaditana CCMP526] >gi|422293733|gb|EKU21033.1| hypothetical protein NGA_0137200, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 382.104 bits (980), Expect = 1.241e-133 Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0
Query: 1 MEAITPPKPGTAWRRRRGRRIGRLYGHVSLSAVIPFLLLVLGFFALLLPSLCHGAAAGPFGGQKTKKQKPVVSLTSEELLDHLEEWNTDLAIFFYAPWCPYCKLVGPYWDMLGEWHLAQTTPSLLITRFDCEQDALAMDICMYMGVTQYPTIQYLGYGSYYQNLLSWLFRHPGSNVDRTVFFEG 184
MEAITPPKPGTAWRRRRGRRIGRLYGHVSLSAVIPFLLLVLGFFALLLPSLCHGAAAGPFGGQKTKKQKPVVSLTSEELLDHLEEWNTDLAIFFYAPWCPYCKLVGPYWDMLGEWHLAQTTPSLLITRFDCEQDALAMDICMYMGVTQYPTIQYLGYGSYYQNLLSWLFRHPGSNVDRTVFFEG
Sbjct: 1 MEAITPPKPGTAWRRRRGRRIGRLYGHVSLSAVIPFLLLVLGFFALLLPSLCHGAAAGPFGGQKTKKQKPVVSLTSEELLDHLEEWNTDLAIFFYAPWCPYCKLVGPYWDMLGEWHLAQTTPSLLITRFDCEQDALAMDICMYMGVTQYPTIQYLGYGSYYQNLLSWLFRHPGSNVDRTVFFEG 184
BLAST of EWM25280.1 vs. NCBI_GenBank
Match: gi|873226775|emb|CEM20333.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 83.9593 bits (206), Expect = 2.411e-16 Identity = 45/152 (29.61%), Postives = 70/152 (46.05%), Query Frame = 0
Query: 58 GPFGGQKTKKQKPVVSLTSEELLDHLEEWNTDLAIFFYAPWCPYCKLVGPYWDMLGEWHLAQTTPSLLITRFDCEQDALAMDICMYMGVTQYPTIQYLGYGSYYQ-NLLSWLFRHPGSNVDRTVFFEGVPDP-EILKDWTLMMKGISGWHRW 207
G + + VV L+ EL H+E W+ DL +FFYAPW CK + P + LG +++ + + + +F+C ++C +G+ PT + G N S L R F G P E L+DWT +M+ +S RW
Sbjct: 13 AAVGAHLRQAGQTVVDLSVAELRHHMEVWSEDLVVFFYAPWSSDCKRLAPLTESLGRFYVERRVKDIRVAKFNCVASKTHRELCDGLGIQSLPTFLFFASGKMRSFNRTSTLLAERDVKHHRASKFRGDPYIYESLRDWTRIMRWLSLGQRW 164
BLAST of EWM25280.1 vs. NCBI_GenBank
Match: gi|298707726|emb|CBJ26043.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 80.8777 bits (198), Expect = 7.831e-15 Identity = 50/154 (32.47%), Postives = 77/154 (50.00%), Query Frame = 0
Query: 65 TKKQKPVVSLTSEELLDHLEEWNTDLAIFFYAPWCPYCK-LVGPYWDMLGEWHLAQTTP----SLLITRFDCEQDALAMDICMYMGVTQYPTIQYLGYGSYY-QNLLSWLFRHPG-SNVDRTVFFE--GVPDPEILKDWTLMMKGISGWHRWRE 209
T +P+ L + L ++ W TD A+ FYAPWC +CK L P W+ + +A+ P L++ +F+CEQD A C + + YPT + G G ++ + LS + P + D + F V E+L WT M ISG++R E
Sbjct: 41 TSLAEPLAPLDTATLTSNMRHWTTDYAVMFYAPWCQHCKELFMPLWEDVS-MQMAEEDPRGKRKLVLAKFNCEQDTTAAAFCQEINLQFYPTFMFFGAGKFHDHDPLSGMVLGPRPTEHDSSAKFPAGAVVYHEVLAGWTKTMHFISGYNRVME 193
BLAST of EWM25280.1 vs. NCBI_GenBank
Match: gi|1072235367|gb|OEU20096.1| (hypothetical protein FRACYDRAFT_236164 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 82.4185 bits (202), Expect = 1.199e-14 Identity = 55/155 (35.48%), Postives = 84/155 (54.19%), Query Frame = 0
Query: 76 SEELLDHLEEW-NTDLAIFFYAPWCPYCKLVGPYWDMLGEWHLAQTTPS-LLITRFDCEQDALAMDICMYMGVTQYPTIQYLGYGSYYQN-----LLSWLFRHPG----SNVDRTVFFEGV-PDPEILKDWTLMMKGISGWHRWR-EGWRKRTKS 217
S+ L +L+E+ DLA+ FYAPW Y + + PYW+ + A TT S L++ FDCE +A M++C + VT YPT+ ++G G +Y LL + G S V TV F+G + + DW M+ +S WH W +G+ KR ++
Sbjct: 61 SDTLAYYLDEYPGYDLAVMFYAPWDSYSQRLAPYWNQIAHILDAGTTQSKLIMALFDCELNAAHMELCKSIKVTHYPTLMFIGSGPFYDTDPITKLLLGKDKSAGVMGESPVPNTVKFQGNWQYTDSILDWIRTMQALSRWHTWSTKGFGKRLRN 215
BLAST of EWM25280.1 vs. NCBI_GenBank
Match: gi|224001138|ref|XP_002290241.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220973663|gb|EED91993.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 81.6481 bits (200), Expect = 2.300e-14 Identity = 52/144 (36.11%), Postives = 74/144 (51.39%), Query Frame = 0
Query: 78 ELLDHLEEWNTDLAIFFYAPWCPYCKLVGPYWDMLGEWHLAQTTPS-LLITRFDCEQDALAMDICMYMGVTQYPTIQYLGYGSYYQNLL---SWLFRHP------GSNVDRTVFFEG--VPDPEILKDWTLMMKGISGWHRWRE 209
EL+D E D AI FYA WC C V P WD + A + S L++ FDCE+D M++C+ GV YPT+ ++G G Y+ L S + + + + RTV F+G +IL DW +M+G+S WH E
Sbjct: 93 ELVD--EYIGHDAAILFYAQWCNNCHAVAPSWDAIATHVNAGSRSSKLVMALFDCEKDTRHMELCVAAGVKAYPTMMFVGSGEYHDTDLITRSVVGKDKSAGPFGATTLRRTVKFQGNWQYGDQIL-DWVNIMRGLSSWHSMSE 233
BLAST of EWM25280.1 vs. NCBI_GenBank
Match: gi|397581178|gb|EJK51843.1| (hypothetical protein THAOC_28951 [Thalassiosira oceanica]) HSP 1 Score: 76.6406 bits (187), Expect = 1.358e-12 Identity = 45/132 (34.09%), Postives = 68/132 (51.52%), Query Frame = 0
Query: 89 DLAIFFYAPWCPYCKLVGPYWDMLGEWHLAQTTPS-LLITRFDCEQDALAMDICMYMGVTQYPTIQYLGYGSYYQ-NLLSWLF----RHPG----SNVDRTVFFEGV-PDPEILKDWTLMMKGISGWHRWRE 209
D A+ FYA WC C + P WD + A + S L++ FDCE+ A +C G+ YPT+ ++G G+ + + LS R G S + RTV F+G P+ + DW +M+G+S WH + E
Sbjct: 112 DAAVMFYAQWCQNCHALAPSWDAIATHLDAGSERSKLVMALFDCEKSTDAARLCAAAGIKAYPTMMFVGSGAVHDTDFLSRSLLGADRSAGPFGSSPLRRTVKFQGNWQYPDAVMDWVNLMRGLSSWHVFTE 243
BLAST of EWM25280.1 vs. NCBI_GenBank
Match: gi|219127404|ref|XP_002183926.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217404649|gb|EEC44595.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 69.3218 bits (168), Expect = 3.297e-10 Identity = 59/208 (28.37%), Postives = 86/208 (41.35%), Query Frame = 0
Query: 36 FLLLVLGFFALLLPSLCHGAA---AGPFGGQKTKKQKPVVSLTSEEL--------LDHLE-----------EWNTD-----LAIFFYAPWCPYCKLVGPYWDMLGEW-HLAQTTPSLLITRFDCEQDALAMDICMYMGVTQYPTIQYLGYGSYYQNLLSWLFRHPGSNVDR--TVFFEGVPDPEILKDWTLMMKGISGWHRWREGWRK 213
++ V+G+ LLL +C AA + P G T+ + T E LD+L+ W D + + FYA WC C P +D + + H L++ FDCEQD +C GVT YPTI +L S +L R P + + T F + + DW ++G+S WH R GW K
Sbjct: 20 VVMTVMGWGLLLL--VCTEAAQSSSSPSGTNTTRSRSTATGTTDESSTSVTRVGNLDYLDAATMAYYLDAPRWTADHPEHDVVVLFYAQWCRNCHAFAPLYDQMSKLLHAGTKDSQLVMGLFDCEQDKAHSRVCSDAGVTHYPTIMFL---SSSGQVLQRGRRSPKVPLPKHITTFRGNWQYGDAVMDWIKTLRGLSHWH--RAGWGK 220
BLAST of EWM25280.1 vs. NCBI_GenBank
Match: gi|149235822|ref|XP_001523789.1| (hypothetical protein LELG_05205 [Lodderomyces elongisporus NRRL YB-4239] >gi|146452768|gb|EDK47024.1| hypothetical protein LELG_05205 [Lodderomyces elongisporus NRRL YB-4239]) HSP 1 Score: 68.1662 bits (165), Expect = 1.083e-9 Identity = 40/120 (33.33%), Postives = 59/120 (49.17%), Query Frame = 0
Query: 44 FALLLPSLCHGAAAGPFGGQKTKK-QKPVVSLTSEELLDHLEEWNTDLAIFFYAPWCPYCKLVGPYWDMLGEWHLAQTTPSLLITRFDCEQDALAMDICMYMGVTQYPTIQYLGYGSYYQ 162
A LL + A GP G VV LTS+ LEE N + F+APWC YCK++GP + + L ++ P + + + DC QD ++CM G+ YPT++ + G Q
Sbjct: 11 LATLLAVVSVSQAGGPADGDAVADPNSAVVKLTSDNFASFLEE-NPLVLTEFFAPWCGYCKMLGPEFSKAAD-SLNESHPKIKLAQVDCTQDE---ELCMEFGIRGYPTLKIIRDGDSKQ 125
BLAST of EWM25280.1 vs. NCBI_GenBank
Match: gi|723198265|gb|KHC71996.1| (protein disulfide isomerase [Candida albicans SC5314] >gi|723206193|gb|KHC79853.1| protein disulfide isomerase [Candida albicans SC5314]) HSP 1 Score: 65.855 bits (159), Expect = 6.133e-9 Identity = 40/117 (34.19%), Postives = 58/117 (49.57%), Query Frame = 0
Query: 44 FALLLPSLCHGAAAGPFGGQKTKK-QKPVVSLTSEELLDHLEEWNTDLAIFFYAPWCPYCKLVGPYWDMLGEWHLAQTTPSLLITRFDCEQDALAMDICMYMGVTQYPTIQYLGYGS 159
A LL + A+GP G VV LTSE +EE LA FF APWC YCK++GP + + L ++ P + + + DC +D +CM G+ YPT++ + G
Sbjct: 11 LATLLAVVSITHASGPTDGDAVADPNSAVVKLTSENFASFIEENPLILAEFF-APWCGYCKMLGPEYSKAAD-SLNESHPKIKLAQIDCTEDEA---LCMEHGIRGYPTLKIIRDGD 122 The following BLAST results are available for this feature:
BLAST of EWM25280.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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