EWM25280.1, cds5393 (CDS) Nannochloropsis gaditana

Overview
NameEWM25280.1
Unique Namecds5393
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:932107..932414 -
Alignment locationCM002465.1:931606..931932 -
Alignment locationCM002465.1:931484..931520 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25280.1
ProductThioredoxin domain protein
Orig transcript idgnl|cribi|Naga_101428g1.1393.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:932107..932414 -
CM002465.1supercontigCM002465.1:931606..931932 -
CM002465.1supercontigCM002465.1:931484..931520 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005623cell
Vocabulary: Biological Process
TermDefinition
GO:0019725cellular homeostasis
GO:0045454cell redox homeostasis
Vocabulary: INTERPRO
TermDefinition
IPR013766Thioredoxin_domain
IPR012336Thioredoxin-like_fold
Homology
BLAST of EWM25280.1 vs. NCBI_GenBank
Match: gi|585107017|gb|EWM25280.1| (Thioredoxin domain protein [Nannochloropsis gaditana])

HSP 1 Score: 463.381 bits (1191), Expect = 3.358e-165
Identity = 223/223 (100.00%), Postives = 223/223 (100.00%), Query Frame = 0
Query:    1 MEAITPPKPGTAWRRRRGRRIGRLYGHVSLSAVIPFLLLVLGFFALLLPSLCHGAAAGPFGGQKTKKQKPVVSLTSEELLDHLEEWNTDLAIFFYAPWCPYCKLVGPYWDMLGEWHLAQTTPSLLITRFDCEQDALAMDICMYMGVTQYPTIQYLGYGSYYQNLLSWLFRHPGSNVDRTVFFEGVPDPEILKDWTLMMKGISGWHRWREGWRKRTKSWRRPCE 223
            MEAITPPKPGTAWRRRRGRRIGRLYGHVSLSAVIPFLLLVLGFFALLLPSLCHGAAAGPFGGQKTKKQKPVVSLTSEELLDHLEEWNTDLAIFFYAPWCPYCKLVGPYWDMLGEWHLAQTTPSLLITRFDCEQDALAMDICMYMGVTQYPTIQYLGYGSYYQNLLSWLFRHPGSNVDRTVFFEGVPDPEILKDWTLMMKGISGWHRWREGWRKRTKSWRRPCE
Sbjct:    1 MEAITPPKPGTAWRRRRGRRIGRLYGHVSLSAVIPFLLLVLGFFALLLPSLCHGAAAGPFGGQKTKKQKPVVSLTSEELLDHLEEWNTDLAIFFYAPWCPYCKLVGPYWDMLGEWHLAQTTPSLLITRFDCEQDALAMDICMYMGVTQYPTIQYLGYGSYYQNLLSWLFRHPGSNVDRTVFFEGVPDPEILKDWTLMMKGISGWHRWREGWRKRTKSWRRPCE 223          
BLAST of EWM25280.1 vs. NCBI_GenBank
Match: gi|553191134|ref|XP_005855328.1| (hypothetical protein NGA_0137200, partial [Nannochloropsis gaditana CCMP526] >gi|422293733|gb|EKU21033.1| hypothetical protein NGA_0137200, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 382.104 bits (980), Expect = 1.241e-133
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0
Query:    1 MEAITPPKPGTAWRRRRGRRIGRLYGHVSLSAVIPFLLLVLGFFALLLPSLCHGAAAGPFGGQKTKKQKPVVSLTSEELLDHLEEWNTDLAIFFYAPWCPYCKLVGPYWDMLGEWHLAQTTPSLLITRFDCEQDALAMDICMYMGVTQYPTIQYLGYGSYYQNLLSWLFRHPGSNVDRTVFFEG 184
            MEAITPPKPGTAWRRRRGRRIGRLYGHVSLSAVIPFLLLVLGFFALLLPSLCHGAAAGPFGGQKTKKQKPVVSLTSEELLDHLEEWNTDLAIFFYAPWCPYCKLVGPYWDMLGEWHLAQTTPSLLITRFDCEQDALAMDICMYMGVTQYPTIQYLGYGSYYQNLLSWLFRHPGSNVDRTVFFEG
Sbjct:    1 MEAITPPKPGTAWRRRRGRRIGRLYGHVSLSAVIPFLLLVLGFFALLLPSLCHGAAAGPFGGQKTKKQKPVVSLTSEELLDHLEEWNTDLAIFFYAPWCPYCKLVGPYWDMLGEWHLAQTTPSLLITRFDCEQDALAMDICMYMGVTQYPTIQYLGYGSYYQNLLSWLFRHPGSNVDRTVFFEG 184          
BLAST of EWM25280.1 vs. NCBI_GenBank
Match: gi|873226775|emb|CEM20333.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 83.9593 bits (206), Expect = 2.411e-16
Identity = 45/152 (29.61%), Postives = 70/152 (46.05%), Query Frame = 0
Query:   58 GPFGGQKTKKQKPVVSLTSEELLDHLEEWNTDLAIFFYAPWCPYCKLVGPYWDMLGEWHLAQTTPSLLITRFDCEQDALAMDICMYMGVTQYPTIQYLGYGSYYQ-NLLSWLFRHPGSNVDRTVFFEGVPDP-EILKDWTLMMKGISGWHRW 207
               G    +  + VV L+  EL  H+E W+ DL +FFYAPW   CK + P  + LG +++ +    + + +F+C       ++C  +G+   PT  +   G     N  S L         R   F G P   E L+DWT +M+ +S   RW
Sbjct:   13 AAVGAHLRQAGQTVVDLSVAELRHHMEVWSEDLVVFFYAPWSSDCKRLAPLTESLGRFYVERRVKDIRVAKFNCVASKTHRELCDGLGIQSLPTFLFFASGKMRSFNRTSTLLAERDVKHHRASKFRGDPYIYESLRDWTRIMRWLSLGQRW 164          
BLAST of EWM25280.1 vs. NCBI_GenBank
Match: gi|298707726|emb|CBJ26043.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 80.8777 bits (198), Expect = 7.831e-15
Identity = 50/154 (32.47%), Postives = 77/154 (50.00%), Query Frame = 0
Query:   65 TKKQKPVVSLTSEELLDHLEEWNTDLAIFFYAPWCPYCK-LVGPYWDMLGEWHLAQTTP----SLLITRFDCEQDALAMDICMYMGVTQYPTIQYLGYGSYY-QNLLSWLFRHPG-SNVDRTVFFE--GVPDPEILKDWTLMMKGISGWHRWRE 209
            T   +P+  L +  L  ++  W TD A+ FYAPWC +CK L  P W+ +    +A+  P     L++ +F+CEQD  A   C  + +  YPT  + G G ++  + LS +   P  +  D +  F    V   E+L  WT  M  ISG++R  E
Sbjct:   41 TSLAEPLAPLDTATLTSNMRHWTTDYAVMFYAPWCQHCKELFMPLWEDVS-MQMAEEDPRGKRKLVLAKFNCEQDTTAAAFCQEINLQFYPTFMFFGAGKFHDHDPLSGMVLGPRPTEHDSSAKFPAGAVVYHEVLAGWTKTMHFISGYNRVME 193          
BLAST of EWM25280.1 vs. NCBI_GenBank
Match: gi|1072235367|gb|OEU20096.1| (hypothetical protein FRACYDRAFT_236164 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 82.4185 bits (202), Expect = 1.199e-14
Identity = 55/155 (35.48%), Postives = 84/155 (54.19%), Query Frame = 0
Query:   76 SEELLDHLEEW-NTDLAIFFYAPWCPYCKLVGPYWDMLGEWHLAQTTPS-LLITRFDCEQDALAMDICMYMGVTQYPTIQYLGYGSYYQN-----LLSWLFRHPG----SNVDRTVFFEGV-PDPEILKDWTLMMKGISGWHRWR-EGWRKRTKS 217
            S+ L  +L+E+   DLA+ FYAPW  Y + + PYW+ +     A TT S L++  FDCE +A  M++C  + VT YPT+ ++G G +Y       LL    +  G    S V  TV F+G     + + DW   M+ +S WH W  +G+ KR ++
Sbjct:   61 SDTLAYYLDEYPGYDLAVMFYAPWDSYSQRLAPYWNQIAHILDAGTTQSKLIMALFDCELNAAHMELCKSIKVTHYPTLMFIGSGPFYDTDPITKLLLGKDKSAGVMGESPVPNTVKFQGNWQYTDSILDWIRTMQALSRWHTWSTKGFGKRLRN 215          
BLAST of EWM25280.1 vs. NCBI_GenBank
Match: gi|224001138|ref|XP_002290241.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220973663|gb|EED91993.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 81.6481 bits (200), Expect = 2.300e-14
Identity = 52/144 (36.11%), Postives = 74/144 (51.39%), Query Frame = 0
Query:   78 ELLDHLEEWNTDLAIFFYAPWCPYCKLVGPYWDMLGEWHLAQTTPS-LLITRFDCEQDALAMDICMYMGVTQYPTIQYLGYGSYYQNLL---SWLFRHP------GSNVDRTVFFEG--VPDPEILKDWTLMMKGISGWHRWRE 209
            EL+D  E    D AI FYA WC  C  V P WD +     A +  S L++  FDCE+D   M++C+  GV  YPT+ ++G G Y+   L   S + +         + + RTV F+G      +IL DW  +M+G+S WH   E
Sbjct:   93 ELVD--EYIGHDAAILFYAQWCNNCHAVAPSWDAIATHVNAGSRSSKLVMALFDCEKDTRHMELCVAAGVKAYPTMMFVGSGEYHDTDLITRSVVGKDKSAGPFGATTLRRTVKFQGNWQYGDQIL-DWVNIMRGLSSWHSMSE 233          
BLAST of EWM25280.1 vs. NCBI_GenBank
Match: gi|397581178|gb|EJK51843.1| (hypothetical protein THAOC_28951 [Thalassiosira oceanica])

HSP 1 Score: 76.6406 bits (187), Expect = 1.358e-12
Identity = 45/132 (34.09%), Postives = 68/132 (51.52%), Query Frame = 0
Query:   89 DLAIFFYAPWCPYCKLVGPYWDMLGEWHLAQTTPS-LLITRFDCEQDALAMDICMYMGVTQYPTIQYLGYGSYYQ-NLLSWLF----RHPG----SNVDRTVFFEGV-PDPEILKDWTLMMKGISGWHRWRE 209
            D A+ FYA WC  C  + P WD +     A +  S L++  FDCE+   A  +C   G+  YPT+ ++G G+ +  + LS       R  G    S + RTV F+G    P+ + DW  +M+G+S WH + E
Sbjct:  112 DAAVMFYAQWCQNCHALAPSWDAIATHLDAGSERSKLVMALFDCEKSTDAARLCAAAGIKAYPTMMFVGSGAVHDTDFLSRSLLGADRSAGPFGSSPLRRTVKFQGNWQYPDAVMDWVNLMRGLSSWHVFTE 243          
BLAST of EWM25280.1 vs. NCBI_GenBank
Match: gi|219127404|ref|XP_002183926.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217404649|gb|EEC44595.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 69.3218 bits (168), Expect = 3.297e-10
Identity = 59/208 (28.37%), Postives = 86/208 (41.35%), Query Frame = 0
Query:   36 FLLLVLGFFALLLPSLCHGAA---AGPFGGQKTKKQKPVVSLTSEEL--------LDHLE-----------EWNTD-----LAIFFYAPWCPYCKLVGPYWDMLGEW-HLAQTTPSLLITRFDCEQDALAMDICMYMGVTQYPTIQYLGYGSYYQNLLSWLFRHPGSNVDR--TVFFEGVPDPEILKDWTLMMKGISGWHRWREGWRK 213
             ++ V+G+  LLL  +C  AA   + P G   T+ +      T E          LD+L+            W  D     + + FYA WC  C    P +D + +  H       L++  FDCEQD     +C   GVT YPTI +L   S    +L    R P   + +  T F       + + DW   ++G+S WH  R GW K
Sbjct:   20 VVMTVMGWGLLLL--VCTEAAQSSSSPSGTNTTRSRSTATGTTDESSTSVTRVGNLDYLDAATMAYYLDAPRWTADHPEHDVVVLFYAQWCRNCHAFAPLYDQMSKLLHAGTKDSQLVMGLFDCEQDKAHSRVCSDAGVTHYPTIMFL---SSSGQVLQRGRRSPKVPLPKHITTFRGNWQYGDAVMDWIKTLRGLSHWH--RAGWGK 220          
BLAST of EWM25280.1 vs. NCBI_GenBank
Match: gi|149235822|ref|XP_001523789.1| (hypothetical protein LELG_05205 [Lodderomyces elongisporus NRRL YB-4239] >gi|146452768|gb|EDK47024.1| hypothetical protein LELG_05205 [Lodderomyces elongisporus NRRL YB-4239])

HSP 1 Score: 68.1662 bits (165), Expect = 1.083e-9
Identity = 40/120 (33.33%), Postives = 59/120 (49.17%), Query Frame = 0
Query:   44 FALLLPSLCHGAAAGPFGGQKTKK-QKPVVSLTSEELLDHLEEWNTDLAIFFYAPWCPYCKLVGPYWDMLGEWHLAQTTPSLLITRFDCEQDALAMDICMYMGVTQYPTIQYLGYGSYYQ 162
             A LL  +    A GP  G         VV LTS+     LEE N  +   F+APWC YCK++GP +    +  L ++ P + + + DC QD    ++CM  G+  YPT++ +  G   Q
Sbjct:   11 LATLLAVVSVSQAGGPADGDAVADPNSAVVKLTSDNFASFLEE-NPLVLTEFFAPWCGYCKMLGPEFSKAAD-SLNESHPKIKLAQVDCTQDE---ELCMEFGIRGYPTLKIIRDGDSKQ 125          
BLAST of EWM25280.1 vs. NCBI_GenBank
Match: gi|723198265|gb|KHC71996.1| (protein disulfide isomerase [Candida albicans SC5314] >gi|723206193|gb|KHC79853.1| protein disulfide isomerase [Candida albicans SC5314])

HSP 1 Score: 65.855 bits (159), Expect = 6.133e-9
Identity = 40/117 (34.19%), Postives = 58/117 (49.57%), Query Frame = 0
Query:   44 FALLLPSLCHGAAAGPFGGQKTKK-QKPVVSLTSEELLDHLEEWNTDLAIFFYAPWCPYCKLVGPYWDMLGEWHLAQTTPSLLITRFDCEQDALAMDICMYMGVTQYPTIQYLGYGS 159
             A LL  +    A+GP  G         VV LTSE     +EE    LA FF APWC YCK++GP +    +  L ++ P + + + DC +D     +CM  G+  YPT++ +  G 
Sbjct:   11 LATLLAVVSITHASGPTDGDAVADPNSAVVKLTSENFASFIEENPLILAEFF-APWCGYCKMLGPEYSKAAD-SLNESHPKIKLAQIDCTEDEA---LCMEHGIRGYPTLKIIRDGD 122          
The following BLAST results are available for this feature:
BLAST of EWM25280.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107017|gb|EWM25280.1|3.358e-165100.00Thioredoxin domain protein [Nannochloropsis gadita... [more]
gi|553191134|ref|XP_005855328.1|1.241e-133100.00hypothetical protein NGA_0137200, partial [Nannoch... [more]
gi|873226775|emb|CEM20333.1|2.411e-1629.61unnamed protein product [Vitrella brassicaformis C... [more]
gi|298707726|emb|CBJ26043.1|7.831e-1532.47conserved unknown protein [Ectocarpus siliculosus][more]
gi|1072235367|gb|OEU20096.1|1.199e-1435.48hypothetical protein FRACYDRAFT_236164 [Fragilario... [more]
gi|224001138|ref|XP_002290241.1|2.300e-1436.11predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|397581178|gb|EJK51843.1|1.358e-1234.09hypothetical protein THAOC_28951 [Thalassiosira oc... [more]
gi|219127404|ref|XP_002183926.1|3.297e-1028.37predicted protein, partial [Phaeodactylum tricornu... [more]
gi|149235822|ref|XP_001523789.1|1.083e-933.33hypothetical protein LELG_05205 [Lodderomyces elon... [more]
gi|723198265|gb|KHC71996.1|6.133e-934.19protein disulfide isomerase [Candida albicans SC53... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5406rna5406Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications