rna5405, rna5405 (mRNA) Nannochloropsis gaditana

Overview
Namerna5405
Unique Namerna5405
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1591
Alignment locationCM002465.1:930020..930669 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_102358g1.10680.mrna
Orig protein idgnl|cribi|Naga_102358g1.10680
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:930020..930669 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102358g1gene5227Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5405rna5405-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25281.1cds5392Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5405 ID=rna5405|Name=rna5405|organism=Nannochloropsis gaditana|type=mRNA|length=1591bp
GGGAGAAGGAAAGACGGCGACGGTGACCACCCTCCCTTCCCCCCGGCCGC
GCGCGTCAAGCCCGAACAAGGCAGCGCCGAGGGCCGTCACGCCCCTGGCC
CCCCGCACGGCCCAGCCTCCTCCTCCGCCTCCTCTGATTCCCTCGCCTTG
TGCAACCTCCCGTCCTGGCTTCCCTCCCTCCCTCCCTCCCTACCCCCGGC
CGCCAGTCCTGTGGAGGCCCTTGAGGCACGTCTCCAGAAATGCCTTCGGG
CGCGCCCTTCGGCCCCGATTTCCCTCTTGGAAATCCGGCGCACGCAACGG
CGAGCGGAGAAACGTGACAAGGACAGACATGCCGACGTGGCCTGGGAGAA
GCAGGGCGGGAGGGAGGGCGGGAGGGAGGGCGGGAGGGAGGAAGGTTTGG
TACGGGTCGAAGTGGTGAAGACCCTGGCGGGGATCTGGGGGAGGAAGGAT
GAGACAAGAGGCACGCAGGCAGGACTGCCCCAAGGGAAAGGCATGACCGT
GCGGGCACGTCAAGGGGAGGAGGAAGAGCTTTCCAGTGAGAAACGTCGGG
CGGGAGAAGGTGCGGTCGCGCCGACGGCCTTGGCCGTGTCTGCTCGAGGC
ACAGTGGCCGTGGGGACCAAACAGGGGGGGTATTGTCGTCTTCCAGGAAG
GGAGCGAGGGCCGGACGGAGGGTGGGACGGAGGGCGGGACGGAGGGCGGA
TGGTGGCTGCACCGAGGGGGCGGGCCGGCGGAAGGGACGGGCATGGACGG
GGAAGTGACCTCGTTGGATTTCCACCCTGTCCCTCCCTCCGCCCCTCCCT
CCGCCTCACCCTCCGTCCCTCCCTCCGCCAAGATGGGGGGAAAAGAGCAG
GAGTTTCTGGTGAGTGGTTTTCGCAGTGGGAAGGTGACGCTGTGGGAGGT
GGGGGCAGGGGTAGGGGCGGAGGGAAAGGGGGGAGGCGGGCGGGCTGTAA
AGAGCGTGACGGAGGTGCATTCGACGGCTCTGCTTGCCGTGCGTTTTGTC
AGCAGCGGCGCCAGTGTCACCCTCCGTGACGCCCCAAGCTACCCGGAATT
AAGCACCGGCAGCCAGAAGGGACCGAACGCGGTCGTGTCGGTCGACGTGG
GGGGGAACGTCCACAAACTCCACTTTTCCCGACTTTTGTGGGGAAATTGG
AGCCTGGAGACGGAGTGTCTGTTGGACGGAAAGGCAGGAATGATTCCTGC
CCTTGCCATCCTTCCCCCCGCCCTCTCTCCCTCCCTCCTCGCCCGCCTCC
TTCCCCCCGCGTCCCCGGTCCCGACGAAGGGGGCGCCGAAAGTCCCAAAA
CCGTTACGGACGAGCTAACGGTTTCCAAGTCTGGCTCCCTTTCCTCCTCC
TTCTCCCTGAACGCCTTGCGGCTCGTCACTACGGCCGCCGCTTCCTCTTC
CTCCTCCCTTCTTCCCCCTCCTTCCCTCCTCCCTCTCTCCCTCCTTGCCT
TGTCTTCAGAGAAATCTTCCTTTGTTGTCTCCGTCGAGCCCACTGTCAAG
GTCCTCCACCGGTGGGATCGCCCTCCTCACACCTCTTCCAACGCTCAACC
CCCCACCGCCTGTCTCTCCTGGGCCTGGCTCCCTCCCTCCC
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protein sequence of rna5405

>rna5405-protein ID=rna5405-protein|Name=rna5405|organism=Nannochloropsis gaditana|type=polypeptide|length=87bp
MEVFHTLRSNSSPASPSSAPPSRPPSRFPSLLEEEGEREAIVDEEASFSS
SPSSSSLPSFLLTPYDRLRYVTLMIRYCPQGLYDYLR
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mRNA from alignment at CM002465.1:930020..930669+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5405 ID=rna5405|Name=rna5405|organism=Nannochloropsis gaditana|type=mRNA|length=650bp|location=Sequence derived from alignment at CM002465.1:930020..930669+ (Nannochloropsis gaditana)
ATGGAAGTCTTCCACACCCTACGTTCcaactcctcccccgcctccccctc
ctcggcccctccctcccgccctccctcccgctttccctcccttcttgagg
aggagggagagagggaggtgcgggaAGTGGTGGtcgaggagatgaagggc
GGGCGTCTCTTCCacagggacaggggggatTTCATTCGGGTggcgggtag
ggagggagggagggagggagggagggagggagggcgaggcaaaaagaagc
agaggtgccctccttcagttttgctttctttttgaagtccctctccttcg
atcccttcctttctccctccctccctccttccttccttagCTCTTCTCTT
CAAAgccgccgcccgccccaTCCTGGAGggtctgggggagggaaaggagg
agctccagtacctcttccttcaggtggagggggagggagtgagggagggg
ggcaatgTGGCAAAGGGTCCTTGTCAGGCACTTaattttttcccttccca
caggccatcgtggacgaggaagcttccttctcctcctccccttcctcctc
ctcccttccctccttcctcctcactccttaCGACCGCCTGCGGTACGTCA
CCCTCATGATCCGGTACTGCCCCCAGGGTCTCTACGACTACCTGCggtaa
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Coding sequence (CDS) from alignment at CM002465.1:930020..930669+

>rna5405 ID=rna5405|Name=rna5405|organism=Nannochloropsis gaditana|type=CDS|length=528bp|location=Sequence derived from alignment at CM002465.1:930020..930669+ (Nannochloropsis gaditana)
ATGGAAGTCTTCCACACCCTACGTTCcaactcctcccccgcctccccctc
ctcggcccctccctcccgccctccctcccgctttccctcccttcttgagg
aggagggagagagggaggccatcgtggacgaggaagcttccttctcctcc
tccccttcctcctcctcccttccctccttcctcctcactccttaCGACCG
CCTGCGGTACGTCACCCTCATGATCCGGTACTGCCCCCAGGGTCTCTACG
ACTACCTGCggtaaATGGAAGTCTTCCACACCCTACGTTCcaactcctcc
cccgcctccccctcctcggcccctccctcccgccctccctcccgctttcc
ctcccttcttgaggaggagggagagagggaggccatcgtggacgaggaag
cttccttctcctcctccccttcctcctcctcccttccctccttcctcctc
actccttaCGACCGCCTGCGGTACGTCACCCTCATGATCCGGTACTGCCC
CCAGGGTCTCTACGACTACCTGCggtaa
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Synonyms
Publications