rna5401, rna5401 (mRNA) Nannochloropsis gaditana

Overview
Namerna5401
Unique Namerna5401
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length249
Alignment locationCM002465.1:918636..919303 -

Link to JBrowse

Properties
Property NameValue
Productconserved unknown protein
Orig transcript idgnl|cribi|Naga_102685g1.2633.mrna
Orig protein idgnl|cribi|Naga_102685g1.2633
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:918636..919303 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102685g1gene5223Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25285.1cds5388Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5401rna5401-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5401 ID=rna5401|Name=rna5401|organism=Nannochloropsis gaditana|type=mRNA|length=249bp
ATGGCCATGCGTGGGAAAAATCAGGAGGAGGCTTGCACTCCATCCTTCGC
CACAACCAAAGAAAGAGGGGGAAAAAAGAACAAAAGAAGAGAAAGCATCC
GCTCCAACAGCCCTCCTCCGAACGCCTTCCCTTCCATGACGTGGTCCTCA
AGTCCTTCATCATGGCTGTCACCATCGTCGTCGTGGCAGTACCAGAGGGC
TTGCCGCTGGCGGTGACCATCTCCCTCGCGTACTCCACCAAGAAGGTAT
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protein sequence of rna5401

>rna5401-protein ID=rna5401-protein|Name=rna5401|organism=Nannochloropsis gaditana|type=polypeptide|length=92bp
MEQLAELFNINHFLVSQVNPQATLFSSVALPQRIWASPLLAVLAHVMQFC
KRQFRSWCRNFFQLLESSRHQGRPTKGRERKGGRVDLGGGGG
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mRNA from alignment at CM002465.1:918636..919303-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5401 ID=rna5401|Name=rna5401|organism=Nannochloropsis gaditana|type=mRNA|length=668bp|location=Sequence derived from alignment at CM002465.1:918636..919303- (Nannochloropsis gaditana)
AGGGAACTACACCTTCCAGGAGGCTTTTGACCGGACGGGAAGGATCCTCA
ACATCATCGTCGCCCCCGCCAACAACTCGGACCCCCCCCGCCTCCTCAAC
TACCTCACCTCCCCCCACGTCCTTGTCTGGTCTGCCGCCGCCGTCTCCTC
GGCGGCTCCGGGTATCTTTGAACCAGGTCCGTCCCTCCTGTCGCCTGTCC
GGCTTTCCGCCCCCGGACGGATCGACCCGCCTCGCCCTTCCCTCCTTCCC
CTCTCATCCCTTCCCCCCTTCGTCCCCCTCCGGCGTCCCCCTTTCTCCAG
GCTATCTCTACGTGCGCCAAGCGGACGGATCGGAACGCCCCGAATCCTCC
TGCAAATGGTACGACGGCTCGGTGGAGAAGGATTTGCCCATGGAACAGCT
GGCGGAGCTCTTCAACATCAACCACTTCCTCGTCTCCCAGGTCAACCCGC
AAGCCACCCTCTTCTCCTCCGTAGCCCTTCCCCAGCGGATATGGGCCTCC
CCGCTCTTGGCTGTCTTGGCCCATGTCATGCAATTTTGCAAACGTCAGTT
CCGGTCCTGGTGCCGGAATTTCTTCCAGCTCTTGGAGTCCAGCCGGCATC
AAGGTAGGCCGACGAAGGGAAGGGAAAGGAAGGGGGGAAGGGTTGATCTA
GGAGGGGGGGGGGGTTGA
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Coding sequence (CDS) from alignment at CM002465.1:918636..919303-

>rna5401 ID=rna5401|Name=rna5401|organism=Nannochloropsis gaditana|type=CDS|length=279bp|location=Sequence derived from alignment at CM002465.1:918636..919303- (Nannochloropsis gaditana)
ATGGAACAGCTGGCGGAGCTCTTCAACATCAACCACTTCCTCGTCTCCCA
GGTCAACCCGCAAGCCACCCTCTTCTCCTCCGTAGCCCTTCCCCAGCGGA
TATGGGCCTCCCCGCTCTTGGCTGTCTTGGCCCATGTCATGCAATTTTGC
AAACGTCAGTTCCGGTCCTGGTGCCGGAATTTCTTCCAGCTCTTGGAGTC
CAGCCGGCATCAAGGTAGGCCGACGAAGGGAAGGGAAAGGAAGGGGGGAA
GGGTTGATCTAGGAGGGGGGGGGGGTTGA
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Synonyms
Publications