rna5400, rna5400 (mRNA) Nannochloropsis gaditana

Overview
Namerna5400
Unique Namerna5400
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1524
Alignment locationCM002465.1:917758..918349 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_102360g1.3396.mrna
Orig protein idgnl|cribi|Naga_102360g1.3396
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:917758..918349 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102360g1gene5222Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5400rna5400-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25286.1cds5387Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5400 ID=rna5400|Name=rna5400|organism=Nannochloropsis gaditana|type=mRNA|length=1524bp
ATCATTTTGTCTCGAAATACTGTACAGAATTCACACGGGAATGCACAACA
CTTTCCCGGGGTCATTTCCCATGCCCTCCGATAGCCCACTCAGAGCGTTC
GCTTACAATTGGTATGCGCGCGGATTAACAGTAGCTTTCCCAGTCGGCGA
CGTGCTCGAGTGTGACAACCGCTACCAGAGTCACAGTAGTAGAGGCGCAG
ATTCTTACGCTACAAGCGCGTACATTTTTGGCAATGTTTTTAATCCTAGA
GATTTCGAAAGGAAGATCCGCCCGGCTTGTGAGACTGGAGGTGGCAAAAT
CAAAAGGCGGGCTTCGACCCCGCCAGACAGGATAAAGCAAGCCGCTTCAA
GCGCCGCGCTGATGCCTATAAACAATATGAAGTAACGTACATCGCCCGTC
ATTTTCGACAGGTACAAAAAGAATGGTAAGAAGCTTGTCCATAGCCCTGT
CCGGGCTCTTCCTTCTCTTTGCTACCACCTGCAGCGCCTTTTCACCTCCC
TCCCAGCATGCGTCTCCGTCCACACGGGCACCCGCCCCTACCACTTCTAC
CCCGCCTCCCATGGCCATGGAAAGTGTCGGAAGGGCTGGGGCGGTGTTTA
GACAGCTCGGTGGTGCGTTGGCAGCGTTGGGGGTGCTGGGTTTGCCGTCT
CTTCCAGCCGGTACGTGAAATATATGCCGGGGTCGATGGAGGAACGGTAG
GAGGCATGTCGTCGCACCGTCCATCGACCTGCTCTCTCGTCACTTTTGCC
ATGTTTCTTACCTCGTGATCCCTGGTTTCCCAGTGGCGGCCCCGCGTCAG
CTGGAGTACATGCCGGGCATCGAAGGTCGGGGATACGGAAAGCCCCGCAC
AAAATACCCGGATTTCTCCCAGACCCCGTCCGGTCTTCAATACAAGGACG
TGCGGGAAGGGAAAGGAAACTCGCCCACGGTGGGGGACCGAGTGGTGATG
GATTGGGAAGGGTACACGATTGGCTACTACGGCCGCCCCTTCGAAGCGAA
GGGGAAGACCAAAGGCGGGGCCTTCGACTCCGCCGACAAGGAATATCTCC
GCTTCGTGCTGGGGAAAACGCCGATGATACCGGCCTTGGAAGAGGCCCTT
CAAACCATGAAGCCCGGGGGCATCCGTCAGGTCATCGTCCCTGCCGAGCT
CGGTTACCCTGTCAATGATCCTGGCCACGATAGGGTGGGGCCTAAACCCT
CAACCTTCTCGGGGCAGCGGGCGCTGGACTTTGTCTTAACGAACCAGGGG
CTGGTGGACAAGACGGTGAGGGAGGGGGAGAGGGAGGGAGGGAGGGAGGG
AGGGGCGAGATGCACGCCACCCTCCAAGATGAGCAGGCGTGTGCTGCTCG
GGCTCGGTAGGGACGGGTCTGTGAACCTTTGAGGTGTTGACGCGGATGGG
AGTGTGCATGCAAGCCTGCTGGCGCGGTATACCTATACCTGTGATTGAAG
CAAGCCGTTGCATCGTTGGCACCATGACTAATGGAAGTGATCACCCCGAC
CGTTTCCTCATTTCCCCTCCCTCC
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protein sequence of rna5400

>rna5400-protein ID=rna5400-protein|Name=rna5400|organism=Nannochloropsis gaditana|type=polypeptide|length=71bp
MAMRGKNQEEACTPSFATTKERGGKKNKRRESIRSNSPPPNAFPSMTWSS
SPSSWLSPSSSWQYQRACRWR
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mRNA from alignment at CM002465.1:917758..918349+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5400 ID=rna5400|Name=rna5400|organism=Nannochloropsis gaditana|type=mRNA|length=592bp|location=Sequence derived from alignment at CM002465.1:917758..918349+ (Nannochloropsis gaditana)
ATGGCCATGCGTGGGAAAAatcaggaggaggcttgcACTCCATCCTTCGC
CACAAccaaagaaagagggggaaaaaagaacaaaagaagagaaagcatCC
GCTCCAACAGGTGGTACAGCCGCCAGACCCCACCGGGCAGTCCTGATACG
TGTTCTTTAAATGCGACCCGGATGtatccccccccgccaggtACCTTCCG
tgcgcctgccctcctcggCACTCTCCACGGGCTCGCcatctcccctcttc
ccgcgcgggggggggtgcATTCCCTGCCATAGGGGCAATCACGAGTAccc
tgcttcttccccttttccctttctcccctttctgtctccttcccctcctc
ctcctttcctccctctttccctcgctCTTCGTtgttcacctcctccttga
cgaaGGAaatcaccctccttccctccctccctccctccttgtcttccttg
cagccctcctccgaacgccttcccttccatgaCGTGGTCCTCAAGTCCTT
CATCATGGCTGTCACCATCGTCGTCGTGGCAGTACCAGAGGGCTTGCCGC
TGGCGGTGACCATCTCCCTCGCGTACTCCACCAAGAAGgtat
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Coding sequence (CDS) from alignment at CM002465.1:917758..918349+

>rna5400 ID=rna5400|Name=rna5400|organism=Nannochloropsis gaditana|type=CDS|length=432bp|location=Sequence derived from alignment at CM002465.1:917758..918349+ (Nannochloropsis gaditana)
ATGGCCATGCGTGGGAAAAatcaggaggaggcttgcACTCCATCCTTCGC
CACAAccaaagaaagagggggaaaaaagaacaaaagaagagaaagcatCC
GCTCCAACAGccctcctccgaacgccttcccttccatgaCGTGGTCCTCA
AGTCCTTCATCATGGCTGTCACCATCGTCGTCGTGGCAGTACCAGAGGGC
TTGCCGCTGGCGGTGAATGGCCATGCGTGGGAAAAatcaggaggaggctt
gcACTCCATCCTTCGCCACAAccaaagaaagagggggaaaaaagaacaaa
agaagagaaagcatCCGCTCCAACAGccctcctccgaacgccttcccttc
catgaCGTGGTCCTCAAGTCCTTCATCATGGCTGTCACCATCGTCGTCGT
GGCAGTACCAGAGGGCTTGCCGCTGGCGGTGA
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Synonyms
Publications