rna5399, rna5399 (mRNA) Nannochloropsis gaditana

Overview
Namerna5399
Unique Namerna5399
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length573
Alignment locationCM002465.1:915284..917469 +

Link to JBrowse

Properties
Property NameValue
ProductPeptidyl-prolyl cis-trans isomerase, FKBP-type
Orig transcript idgnl|cribi|Naga_100403g5.9948.mrna
Orig protein idgnl|cribi|Naga_100403g5.9948
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:915284..917469 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100403g5gene5221Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5399rna5399-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25288.1cds5386Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5399 ID=rna5399|Name=rna5399|organism=Nannochloropsis gaditana|type=mRNA|length=573bp
ATGGCGAGCACTGCTGTCAAAACCCCGGCAGCAAACCTTCCCCCTGACGT
CATCGCCACCGCCCTTCTGAGCCTGGATAAAACCGCCAATCTAGCCCGAG
CACTGTCTTCTCCTCCCACCCAGATGCCTTCCACGATCTCTGATACTGTC
TCCTCCACAAGCGCGGGTTCTGCGGAGAGTAGCCCCGTGGCCTCAACCTC
CTCCCCTGCTTTATACGTCACGGCCCGCGTCGGCGCCCGGGGCCGGGTGC
TTGCTTCGGTCAAGATCCCTGTGCCACCCTCTTCGCCCCCGGCCTTTCCG
TTGGAAGTCCACTTGAAGGAGGGTGACATTTACGCAGACACCCCCCAGGC
CCGGCACGACCTTGCCCAAGCGATCCGATCTTCAGACCTCGTCTTGTCGG
CACGTCTGGACAGTGACGGGCGTGCTTCCACGCGTGATCCTAGAGATTTG
GTAGGACAGGGCGTTGTGTATAAATTCCAGTCGGTAGACTCGGCACAGTG
GTCAAGGGCGGATATTTCTCTAACCGGCCGCGGTGCATTCGGAGAGCTCG
TGACCGGGGGAAAGGTAAGGTAA
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protein sequence of rna5399

>rna5399-protein ID=rna5399-protein|Name=rna5399|organism=Nannochloropsis gaditana|type=polypeptide|length=190bp
MPGIEGRGYGKPRTKYPDFSQTPSGLQYKDVREGKGNSPTVGDRVVMDWE
GYTIGYYGRPFEAKGKTKGGAFDSADKEYLRFVLGKTPMIPALEEALQTM
KPGGIRQVIVPAELGYPVNDPGHDRVGPKPSTFSGQRALDFVLTNQGLVD
KTVREGEREGGREGGARCTPPSKMSRRVLLGLGRDGSVNL
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mRNA from alignment at CM002465.1:915284..917469+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5399 ID=rna5399|Name=rna5399|organism=Nannochloropsis gaditana|type=mRNA|length=2186bp|location=Sequence derived from alignment at CM002465.1:915284..917469+ (Nannochloropsis gaditana)
ATCATTTTGTCTCGAAATACTGTACAGAATTCACACGGGAATGCACAACA
CTTTCCCGGGGTCATTTCCCATGCCCTCCGATAGCCCACTCAGAGCGTTC
GCTTACAATTGGTATGCGCGCGGATTAACAGTAGCTTTCCCAGTCGGCGA
CGTGCTCGAGTGTGACAACCGCTACCAGAGTCACAGTAGTAGAGGCGCAG
ATTCTTACGCTACAAGCGCGTACATTTTTGGCAATGTTTTTAATCCTAGA
GATTTCGAAAGGAAGATCCGCCCGGCTTGTGAGACTGGAGGTGGCAAAAT
CAAAAGGCGGGCTTCGACCCCGCCAGACAGGATAAAGCAAGCCGCTTCAA
GCGCCGCGCTGATGCCTATAAACAATATGAAGTAACGTACATCGCCCGTC
ATTTTCGACAGGTACAAAAAGAATGGTAAGAAGCTTGTCCATAGCCCTGT
CCgggctcttccttctctttgctACCACCTGCAGCGCcttttcacctccc
tcccagcatgCGTCTCCGTCCACACGGGCACCCGCCCCTACCACTTCTAC
CCCGCCTCCCATGGCCATGGAAAGTGTCGGAAGGGCTGGGGCGGTGTTTA
GACAGCTCGGTGGTGCGTTGGCAGCGTTGGGGGTGCTGGGTTTGCCGTCT
CTTCCAGCCGGTACGTGAAATATATGCCGGGGTCGATGGAGGAACGGTAG
GAGGCATGTCGTCGCACCGTCCATCGACCTGCTCTCTCGTCACTTTTGCC
ATGTTTCTTACCTCGTGATCCCTGGTTTCCCAGTGGCGGCCCCGCGTCAG
CTGGAGTACATGCCGGGCATCGAAGGTCGGGGATACGGAAAGCCCCGCAC
AAAATACCCGGATTTCTCCCAGACCCCGTCCGGTCTTCAATACAAGGACg
tgcgggaagggaaaggaaactCGCCCACGGTGGGGGACCGAGTGGTGATG
GATTGGGAAGGGTACACGATTGGGTAGGTTCGGGAGGAGCAGTGAAGCGT
CCTTGGCCGCAGCAatcccgtccttctcctcctcctttcttcctttctgg
aCCGCTCTTTGTCTCGCGGCACTTTCATCCCTTGTACATTCCAATTTATC
TTTCCTGTCTCATCTTTTTCATTTGCTATCgctgttttccctcctccctc
ctcttggccTCCCTCACGCCATCTGTTCCCCCcagacgcctccctccttt
cctcttttcctcgccttgATCGATCTCAGCCTTCCTTTCTGTGcttaccc
ctcctcctgatcGCTTTAAAGCCAcgctcccaccttccttccctcccgct
tcttttcCGTTTCTCACCCTTAACCCCGTggccctcgccttcgtcgTGGA
CACGTTTACATTCCAaacctcctaccccccctcctttcccatcttTCACT
TCAACCTTttctgccctttcctccctctctcccttcttccctctctccct
ccctctctgccgtAGCTACTACGGCCGCCCCTTCgaagcgaaggggaaga
ccaAAGGCGGGGCCTTCGACTCCGCCGACAAGGAATATCTCCGCTTCGTG
CTGGGGAAAACGCCGATGATACCGGCCTTGGAAGAGGCCCTTCAAACCAT
GAAGCCCGGGGGCATCCGTCAGGtcggccttccctccctccctccctccc
tccctccctccctcgggccatcgtcctcgccctgcaCGGTGACTCGACAT
ATCACCCGAGCACCGATGGACCCTCaaccgtctccctccctccctccctc
cctccctccctccctccctccctccctctttcccggtCCCAGGTCATCGT
CCCTGCCGAGCTCGGTTACCCTGTCAATGATCCTGGCCACGATAGGGTGG
GGCCTAAACCCTCAACCTTCTCGGGGCAGCGGGCGCTGGACTTTGTCTTA
ACGAACCAGGGGCTGGTGGACAAgacggtgagggagggggagagggaggg
agggagggagggaggggcgagatGCACGCCACCCTCCAAGATGAGCAGGC
GTGTGCTGCTCGGGCTCGGTAGGGACGGGTCTGTGAACCTTTGAGGTGTT
GACGCGGATGGGAGTGTGCATGCAAGCCTGCTGGCGCGGTATACCTATAC
CTGTGATTGAAGCAAGCCGTTGCATCGTTGGCACCATGACTAATGGAAGT
GATCACCCCGACCGTTTcctcatttcccctccctcc
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Coding sequence (CDS) from alignment at CM002465.1:915284..917469+

>rna5399 ID=rna5399|Name=rna5399|organism=Nannochloropsis gaditana|type=CDS|length=1719bp|location=Sequence derived from alignment at CM002465.1:915284..917469+ (Nannochloropsis gaditana)
ATGCCGGGCATCGAAGGTCGGGGATACGGAAAGCCCCGCACAAAATACCC
GGATTTCTCCCAGACCCCGTCCGGTCTTCAATACAAGGACgtgcgggaag
ggaaaggaaactCGCCCACGGTGGGGGACCGAGTGGTGATGGATTGGGAA
GGGTACACGATTGGCTACTACGGCCGCCCCTTCgaagcgaaggggaagac
caAAGGCGGGGCCTTCGACTCCGCCGACAAGGAATATCTCCGCTTCGTGC
TGGGGAAAACGCCGATGATACCGGCCTTGGAAGAGGCCCTTCAAACCATG
AAGCCCGGGGGCATCCGTCAGGTCATCGTCCCTGCCGAGCTCGGTTACCC
TGTCAATGATCCTGGCCACGATAGGGTGGGGCCTAAACCCTCAACCTTCT
CGGGGCAGCGGGCGCTGGACTTTGTCTTAACGAACCAGGGGCTGGTGGAC
AAgacggtgagggagggggagagggagggagggagggagggaggggcgag
atGCACGCCACCCTCCAAGATGAGCAGGCGTGTGCTGCTCGGGCTCGGTA
GGGACGGGTCTGTGAACCTTTGAATGCCGGGCATCGAAGGTCGGGGATAC
GGAAAGCCCCGCACAAAATACCCGGATTTCTCCCAGACCCCGTCCGGTCT
TCAATACAAGGACgtgcgggaagggaaaggaaactCGCCCACGGTGGGGG
ACCGAGTGGTGATGGATTGGGAAGGGTACACGATTGGCTACTACGGCCGC
CCCTTCgaagcgaaggggaagaccaAAGGCGGGGCCTTCGACTCCGCCGA
CAAGGAATATCTCCGCTTCGTGCTGGGGAAAACGCCGATGATACCGGCCT
TGGAAGAGGCCCTTCAAACCATGAAGCCCGGGGGCATCCGTCAGGTCATC
GTCCCTGCCGAGCTCGGTTACCCTGTCAATGATCCTGGCCACGATAGGGT
GGGGCCTAAACCCTCAACCTTCTCGGGGCAGCGGGCGCTGGACTTTGTCT
TAACGAACCAGGGGCTGGTGGACAAgacggtgagggagggggagagggag
ggagggagggagggaggggcgagatGCACGCCACCCTCCAAGATGAGCAG
GCGTGTGCTGCTCGGGCTCGGTAGGGACGGGTCTGTGAACCTTTGAATGC
CGGGCATCGAAGGTCGGGGATACGGAAAGCCCCGCACAAAATACCCGGAT
TTCTCCCAGACCCCGTCCGGTCTTCAATACAAGGACgtgcgggaagggaa
aggaaactCGCCCACGGTGGGGGACCGAGTGGTGATGGATTGGGAAGGGT
ACACGATTGGCTACTACGGCCGCCCCTTCgaagcgaaggggaagaccaAA
GGCGGGGCCTTCGACTCCGCCGACAAGGAATATCTCCGCTTCGTGCTGGG
GAAAACGCCGATGATACCGGCCTTGGAAGAGGCCCTTCAAACCATGAAGC
CCGGGGGCATCCGTCAGGTCATCGTCCCTGCCGAGCTCGGTTACCCTGTC
AATGATCCTGGCCACGATAGGGTGGGGCCTAAACCCTCAACCTTCTCGGG
GCAGCGGGCGCTGGACTTTGTCTTAACGAACCAGGGGCTGGTGGACAAga
cggtgagggagggggagagggagggagggagggagggaggggcgagatGC
ACGCCACCCTCCAAGATGAGCAGGCGTGTGCTGCTCGGGCTCGGTAGGGA
CGGGTCTGTGAACCTTTGA
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Synonyms
Publications