EWM25288.1, cds5386 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM25288.1
Unique Name	cds5386
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002465.1:916093..916256 +
Alignment location	CM002465.1:916749..916905 +
Alignment location	CM002465.1:917076..917327 +

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM25288.1
Product	Peptidyl-prolyl cis-trans isomerase, FKBP-type
Orig transcript id	gnl\|cribi\|Naga_100403g5.9948.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002465.1	supercontig	CM002465.1:916093..916256 +
CM002465.1	supercontig	CM002465.1:916749..916905 +
CM002465.1	supercontig	CM002465.1:917076..917327 +

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
GO annotation for N. gaditana B31	2020-04-08
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

The following terms have been associated with this CDS:

Vocabulary: **Cellular Component**
Term	Definition
GO:0009579	thylakoid
GO:0016020	membrane
GO:0009507	chloroplast

Vocabulary: **Biological Process**
Term	Definition
GO:0006464	cellular protein modification process
GO:0006457	protein folding

Vocabulary: **Molecular Function**
Term	Definition
GO:0003824	catalytic activity

Vocabulary: **INTERPRO**
Term	Definition
IPR023566	PPIase_FKBP
IPR001179	PPIase_FKBP_dom

Homology

[Close]

BLAST of EWM25288.1 vs. NCBI_GenBank
Match: gi|585107035|gb|EWM25288.1| (Peptidyl-prolyl cis-trans isomerase, FKBP-type [Nannochloropsis gaditana])

HSP 1 Score: 382.489 bits (981), Expect = 2.971e-134
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0

Query:    1 MPGIEGRGYGKPRTKYPDFSQTPSGLQYKDVREGKGNSPTVGDRVVMDWEGYTIGYYGRPFEAKGKTKGGAFDSADKEYLRFVLGKTPMIPALEEALQTMKPGGIRQVIVPAELGYPVNDPGHDRVGPKPSTFSGQRALDFVLTNQGLVDKTVREGEREGGREGGARCTPPSKMSRRVLLGLGRDGSVNL 190
            MPGIEGRGYGKPRTKYPDFSQTPSGLQYKDVREGKGNSPTVGDRVVMDWEGYTIGYYGRPFEAKGKTKGGAFDSADKEYLRFVLGKTPMIPALEEALQTMKPGGIRQVIVPAELGYPVNDPGHDRVGPKPSTFSGQRALDFVLTNQGLVDKTVREGEREGGREGGARCTPPSKMSRRVLLGLGRDGSVNL
Sbjct:    1 MPGIEGRGYGKPRTKYPDFSQTPSGLQYKDVREGKGNSPTVGDRVVMDWEGYTIGYYGRPFEAKGKTKGGAFDSADKEYLRFVLGKTPMIPALEEALQTMKPGGIRQVIVPAELGYPVNDPGHDRVGPKPSTFSGQRALDFVLTNQGLVDKTVREGEREGGREGGARCTPPSKMSRRVLLGLGRDGSVNL 190

[Close]

BLAST of EWM25288.1 vs. NCBI_GenBank
Match: gi|553183393|ref|XP_005853891.1| (hypothetical protein NGA_0428310, partial [Nannochloropsis gaditana CCMP526] >gi|422295172|gb|EKU22471.1| hypothetical protein NGA_0428310, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 313.153 bits (801), Expect = 3.475e-106
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0

Query:    1 MPGIEGRGYGKPRTKYPDFSQTPSGLQYKDVREGKGNSPTVGDRVVMDWEGYTIGYYGRPFEAKGKTKGGAFDSADKEYLRFVLGKTPMIPALEEALQTMKPGGIRQVIVPAELGYPVNDPGHDRVGPKPSTFSGQRALDFVLTNQGLVDKT 152
            MPGIEGRGYGKPRTKYPDFSQTPSGLQYKDVREGKGNSPTVGDRVVMDWEGYTIGYYGRPFEAKGKTKGGAFDSADKEYLRFVLGKTPMIPALEEALQTMKPGGIRQVIVPAELGYPVNDPGHDRVGPKPSTFSGQRALDFVLTNQGLVDKT
Sbjct:   89 MPGIEGRGYGKPRTKYPDFSQTPSGLQYKDVREGKGNSPTVGDRVVMDWEGYTIGYYGRPFEAKGKTKGGAFDSADKEYLRFVLGKTPMIPALEEALQTMKPGGIRQVIVPAELGYPVNDPGHDRVGPKPSTFSGQRALDFVLTNQGLVDKT 240

[Close]

BLAST of EWM25288.1 vs. NCBI_GenBank
Match: gi|553189682|ref|XP_005855051.1| (hypothetical protein NGA_0428320, partial [Nannochloropsis gaditana CCMP526] >gi|422294012|gb|EKU21312.1| hypothetical protein NGA_0428320, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 217.624 bits (553), Expect = 2.367e-70
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0

Query:    1 MPGIEGRGYGKPRTKYPDFSQTPSGLQYKDVREGKGNSPTVGDRVVMDWEGYTIGYYGRPFEAKGKTKGGAFDSADKEYLRFVLGKTPMIPALEEALQTMKPGGIRQ 107
            MPGIEGRGYGKPRTKYPDFSQTPSGLQYKDVREGKGNSPTVGDRVVMDWEGYTIGYYGRPFEAKGKTKGGAFDSADKEYLRFVLGKTPMIPALEEALQTMKPGGIRQ
Sbjct:    1 MPGIEGRGYGKPRTKYPDFSQTPSGLQYKDVREGKGNSPTVGDRVVMDWEGYTIGYYGRPFEAKGKTKGGAFDSADKEYLRFVLGKTPMIPALEEALQTMKPGGIRQ 107

[Close]

BLAST of EWM25288.1 vs. NCBI_GenBank
Match: gi|551653172|ref|XP_005829364.1| (hypothetical protein GUITHDRAFT_95747 [Guillardia theta CCMP2712] >gi|428173482|gb|EKX42384.1| hypothetical protein GUITHDRAFT_95747 [Guillardia theta CCMP2712])

HSP 1 Score: 201.445 bits (511), Expect = 5.622e-63
Identity = 99/153 (64.71%), Postives = 118/153 (77.12%), Query Frame = 0

Query:    1 MPGIEGRGYGKPRTKYPDFSQTPSGLQYKDVREGKGNSPTVGDRVVMDWEGYTIGYYGRPFEAKGKTKGGAFDSADKEYLRFVLGKTPMIPALEEALQTMKPGGIRQVIVPAELGYPVNDPGHDRVGPKPSTFSGQRALDFVLTNQGLVDKTV 153
            MP ++G+ YGK + KYPDF  TPSGLQYKDV+ G G SP  GDRVV DWEGYTIGYYGR F+AK   KGGAF + + ++ R VLG   +IP LEE L+ MK GGIRQ++V  ELGYP +DP H RVGPKPSTF GQRAL+FVL N+GL+DKT+
Sbjct:    1 MPALKGKDYGKTKMKYPDFVATPSGLQYKDVKVGNGESPEDGDRVVFDWEGYTIGYYGRIFQAKNGVKGGAF-ADETDFQRCVLGSHTVIPGLEEGLKGMKVGGIRQLVVTPELGYPEDDPSHTRVGPKPSTFDGQRALNFVLFNKGLIDKTL 152

[Close]

BLAST of EWM25288.1 vs. NCBI_GenBank
Match: gi|1173132369|ref|XP_020522975.1| (peptidyl-prolyl cis-trans isomerase FKBP19, chloroplastic isoform X4 [Amborella trichopoda] >gi|548846922|gb|ERN06126.1| hypothetical protein AMTR_s00016p00074550 [Amborella trichopoda])

HSP 1 Score: 201.83 bits (512), Expect = 6.171e-63
Identity = 93/153 (60.78%), Postives = 122/153 (79.74%), Query Frame = 0

Query:    1 MPGIEGRGYGKPRTKYPDFSQTPSGLQYKDVREGKGNSPTVGDRVVMDWEGYTIGYYGRPFEAKGKTKGGAFDSADKEYLRFVLGKTPMIPALEEALQTMKPGGIRQVIVPAELGYPVNDPGHDRVGPKPSTFSGQRALDFVLTNQGLVDKTV 153
            MP + G+ YGK + +YPD+ +T SGLQYKD+R G G SP +G+ VV+DW+GYTIGYYGR FEA+ KTKGG+F+  DK++ +FVLG   +IPA EEA+ +M  GG+R++IVP ELGYP ND   ++ GP+P+TFSGQRALDFVL NQGL+DKT+
Sbjct:   26 MPALRGKDYGKTKMRYPDYVETKSGLQYKDLRVGSGASPKMGETVVVDWDGYTIGYYGRIFEARNKTKGGSFEGGDKDFYKFVLGSNQVIPAFEEAVASMSLGGVRRIIVPPELGYPDND--FNKSGPRPTTFSGQRALDFVLKNQGLIDKTL 176

[Close]

BLAST of EWM25288.1 vs. NCBI_GenBank
Match: gi|769811495|ref|XP_006844451.2| (peptidyl-prolyl cis-trans isomerase FKBP19, chloroplastic isoform X1 [Amborella trichopoda] >gi|1173132358|ref|XP_020522970.1| peptidyl-prolyl cis-trans isomerase FKBP19, chloroplastic isoform X1 [Amborella trichopoda] >gi|1173132361|ref|XP_020522971.1| peptidyl-prolyl cis-trans isomerase FKBP19, chloroplastic isoform X1 [Amborella trichopoda] >gi|1173132363|ref|XP_020522972.1| peptidyl-prolyl cis-trans isomerase FKBP19, chloroplastic isoform X1 [Amborella trichopoda])

HSP 1 Score: 203.756 bits (517), Expect = 9.066e-63
Identity = 93/153 (60.78%), Postives = 122/153 (79.74%), Query Frame = 0

Query:    1 MPGIEGRGYGKPRTKYPDFSQTPSGLQYKDVREGKGNSPTVGDRVVMDWEGYTIGYYGRPFEAKGKTKGGAFDSADKEYLRFVLGKTPMIPALEEALQTMKPGGIRQVIVPAELGYPVNDPGHDRVGPKPSTFSGQRALDFVLTNQGLVDKTV 153
            MP + G+ YGK + +YPD+ +T SGLQYKD+R G G SP +G+ VV+DW+GYTIGYYGR FEA+ KTKGG+F+  DK++ +FVLG   +IPA EEA+ +M  GG+R++IVP ELGYP ND   ++ GP+P+TFSGQRALDFVL NQGL+DKT+
Sbjct:   88 MPALRGKDYGKTKMRYPDYVETKSGLQYKDLRVGSGASPKMGETVVVDWDGYTIGYYGRIFEARNKTKGGSFEGGDKDFYKFVLGSNQVIPAFEEAVASMSLGGVRRIIVPPELGYPDND--FNKSGPRPTTFSGQRALDFVLKNQGLIDKTL 238

[Close]

BLAST of EWM25288.1 vs. NCBI_GenBank
Match: gi|1147604785|ref|XP_020106368.1| (peptidyl-prolyl cis-trans isomerase FKBP19, chloroplastic [Ananas comosus] >gi|1147604787|ref|XP_020106369.1| peptidyl-prolyl cis-trans isomerase FKBP19, chloroplastic [Ananas comosus])

HSP 1 Score: 202.986 bits (515), Expect = 1.975e-62
Identity = 94/153 (61.44%), Postives = 122/153 (79.74%), Query Frame = 0

Query:    1 MPGIEGRGYGKPRTKYPDFSQTPSGLQYKDVREGKGNSPTVGDRVVMDWEGYTIGYYGRPFEAKGKTKGGAFDSADKEYLRFVLGKTPMIPALEEALQTMKPGGIRQVIVPAELGYPVNDPGHDRVGPKPSTFSGQRALDFVLTNQGLVDKTV 153
            MP + G+ YGK + +YPD+++T SGLQYKD+R G G  P +G+ VV+DW+GYTIGYYGR FEA+ KTKGG+F+  DK++ +F LG   +IPA EEA+  M PGGIR++IVP ELGYP ND   +R+GP+P+TFSGQRALDFVL NQGL+DKT+
Sbjct:   96 MPALRGKDYGKTKMRYPDYTETNSGLQYKDLRVGNGPFPKIGETVVVDWDGYTIGYYGRIFEARNKTKGGSFEGGDKDFFKFKLGSGQVIPAFEEAIAGMAPGGIRRIIVPPELGYPDND--FNRLGPRPTTFSGQRALDFVLRNQGLIDKTL 246

[Close]

BLAST of EWM25288.1 vs. NCBI_GenBank
Match: gi|1173132365|ref|XP_020522973.1| (peptidyl-prolyl cis-trans isomerase FKBP19, chloroplastic isoform X2 [Amborella trichopoda])

HSP 1 Score: 202.601 bits (514), Expect = 2.053e-62
Identity = 93/153 (60.78%), Postives = 122/153 (79.74%), Query Frame = 0

Query:    1 MPGIEGRGYGKPRTKYPDFSQTPSGLQYKDVREGKGNSPTVGDRVVMDWEGYTIGYYGRPFEAKGKTKGGAFDSADKEYLRFVLGKTPMIPALEEALQTMKPGGIRQVIVPAELGYPVNDPGHDRVGPKPSTFSGQRALDFVLTNQGLVDKTV 153
            MP + G+ YGK + +YPD+ +T SGLQYKD+R G G SP +G+ VV+DW+GYTIGYYGR FEA+ KTKGG+F+  DK++ +FVLG   +IPA EEA+ +M  GG+R++IVP ELGYP ND   ++ GP+P+TFSGQRALDFVL NQGL+DKT+
Sbjct:   82 MPALRGKDYGKTKMRYPDYVETKSGLQYKDLRVGSGASPKMGETVVVDWDGYTIGYYGRIFEARNKTKGGSFEGGDKDFYKFVLGSNQVIPAFEEAVASMSLGGVRRIIVPPELGYPDND--FNKSGPRPTTFSGQRALDFVLKNQGLIDKTL 232

[Close]

BLAST of EWM25288.1 vs. NCBI_GenBank
Match: gi|743880417|ref|XP_011036192.1| (PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP19, chloroplastic [Populus euphratica])

HSP 1 Score: 201.83 bits (512), Expect = 3.346e-62
Identity = 94/153 (61.44%), Postives = 122/153 (79.74%), Query Frame = 0

Query:    1 MPGIEGRGYGKPRTKYPDFSQTPSGLQYKDVREGKGNSPTVGDRVVMDWEGYTIGYYGRPFEAKGKTKGGAFDSADKEYLRFVLGKTPMIPALEEALQTMKPGGIRQVIVPAELGYPVNDPGHDRVGPKPSTFSGQRALDFVLTNQGLVDKTV 153
            MP I G+ YGK + +YPD+++T SGLQYKD+R G G  P +G+ VV+DW+GYTIGYYGR FEA+ KTKGG+F+  DK++ +F LG   +IPA EEA+  M PGGIR++IVP ELGYP ND  +++ GP+P+TFSGQRALDFVL NQGL+DKT+
Sbjct:   83 MPAIRGKDYGKTKMRYPDYTETESGLQYKDLRAGSGPLPKMGETVVVDWDGYTIGYYGRIFEARNKTKGGSFEGDDKDFFKFRLGSREVIPAFEEAVSGMAPGGIRRIIVPPELGYPEND--YNKSGPRPTTFSGQRALDFVLRNQGLIDKTL 233

[Close]

BLAST of EWM25288.1 vs. NCBI_GenBank
Match: gi|1150686422|ref|XP_020254408.1| (peptidyl-prolyl cis-trans isomerase FKBP19, chloroplastic isoform X1 [Asparagus officinalis])

HSP 1 Score: 202.216 bits (513), Expect = 3.803e-62
Identity = 94/153 (61.44%), Postives = 122/153 (79.74%), Query Frame = 0

Query:    1 MPGIEGRGYGKPRTKYPDFSQTPSGLQYKDVREGKGNSPTVGDRVVMDWEGYTIGYYGRPFEAKGKTKGGAFDSADKEYLRFVLGKTPMIPALEEALQTMKPGGIRQVIVPAELGYPVNDPGHDRVGPKPSTFSGQRALDFVLTNQGLVDKTV 153
            MP + G+ YGK + +YPD+++T SGLQYKD+R G+G  P +GD VV+DW+GYTIGYYGR FEA+ KTKGG+F+  DK++ +F LG   +I A EEA+  M PGGIR++IVP ELGYP ND   +++GPKP+TFSGQRALDFVL NQGL+DKT+
Sbjct:   90 MPALRGKDYGKSKMRYPDYTKTQSGLQYKDLRTGEGPLPKMGDTVVVDWDGYTIGYYGRIFEARNKTKGGSFEGDDKDFFKFKLGSQQVIQAFEEAVVGMAPGGIRRIIVPPELGYPEND--FNKLGPKPTTFSGQRALDFVLRNQGLIDKTL 240

The following BLAST results are available for this feature:

BLAST of EWM25288.1 vs. NCBI_GenBank

BLAST of EWM25288.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10


Match Name	E-value	Identity	Description
gi\|585107035\|gb\|EWM25288.1\|	2.971e-134	100.00	Peptidyl-prolyl cis-trans isomerase, FKBP-type [Na...	[more]
gi\|553183393\|ref\|XP_005853891.1\|	3.475e-106	100.00	hypothetical protein NGA_0428310, partial [Nannoch...	[more]
gi\|553189682\|ref\|XP_005855051.1\|	2.367e-70	100.00	hypothetical protein NGA_0428320, partial [Nannoch...	[more]
gi\|551653172\|ref\|XP_005829364.1\|	5.622e-63	64.71	hypothetical protein GUITHDRAFT_95747 [Guillardia ...	[more]
gi\|1173132369\|ref\|XP_020522975.1\|	6.171e-63	60.78	peptidyl-prolyl cis-trans isomerase FKBP19, chloro...	[more]
gi\|769811495\|ref\|XP_006844451.2\|	9.066e-63	60.78	peptidyl-prolyl cis-trans isomerase FKBP19, chloro...	[more]
gi\|1147604785\|ref\|XP_020106368.1\|	1.975e-62	61.44	peptidyl-prolyl cis-trans isomerase FKBP19, chloro...	[more]
gi\|1173132365\|ref\|XP_020522973.1\|	2.053e-62	60.78	peptidyl-prolyl cis-trans isomerase FKBP19, chloro...	[more]
gi\|743880417\|ref\|XP_011036192.1\|	3.346e-62	61.44	PREDICTED: peptidyl-prolyl cis-trans isomerase FKB...	[more]
gi\|1150686422\|ref\|XP_020254408.1\|	3.803e-62	61.44	peptidyl-prolyl cis-trans isomerase FKBP19, chloro...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna5399	rna5399	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications