rna5398, rna5398 (mRNA) Nannochloropsis gaditana

Overview
Namerna5398
Unique Namerna5398
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1653
Alignment locationCM002465.1:914121..914693 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100403g4.9947.mrna
Orig protein idgnl|cribi|Naga_100403g4.9947
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:914121..914693 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100403g4gene5220Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5398rna5398-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25287.1cds5385Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5398 ID=rna5398|Name=rna5398|organism=Nannochloropsis gaditana|type=mRNA|length=1653bp
ATGGCGATCAAAATGTTTTTAATTAATTTGCCGTGGCGTTTTCTTCGTGC
GTTTTCTAAAGGTGCTTCCTTGCTCCGTTTCCTCTTCCGTCGGCTTACGT
CTCCTGCTATACGCGACGCGGTGCACTCTAGCTTTGACATGATGATCAGT
AAGCAACTTATAGCCGCGCATCTTCCCTTGGACCAGCCATGGACGCTTGC
AGCGATAGGCCTCTCTGCCGCCTTCCTCGCCTTCATCTGCGTGTTTTTCC
TCCTCACGCCCAGGTCAAGAAAGGACACCCCCCCCGTCATCGGCAATGCC
TGGCCGCTTTTCGGGCATTTTTTCCTCTTCTTGAAGTCTCCCATCAACCT
GATCAAATCCTCCTACCAGACGTACGGGAGCGTCTTCACCGTGAACCTCT
TCACCCAACGCATGACCTTTTTGATCGGCCCGGAGGCGGCCGCGGCATTT
TTCAAGGCGAGCGACAAGGAGCTGGGGCAGGACGAGGTGTACGGGTTCAT
GAAAGCCGTCTTTGGGGAGGGCGTGGTGTACGACTCGGACCCCAAGAAAC
GGAATTTGCAAATGCAACGGACGGCGAACGCCTTGAAATCGGGCCGGCTT
CGGACGTACGTGGAAAAAATTTCGGAGGAAACGGAGGCGTTCTTTAAGGG
GTGGGGGGAGGCGGGGGAGGTGGATATCTGTGAGGCGCTCAGCGATTTGA
TCATTTTGACCGCTTCCCGGTGTTTGCACGGGGACGACGTCCGCCAGGAG
CTCTTCGCGGAGGTCTCCAAGCTTTACAATGACCTGGACCAGGGGATCAC
GCCCGTCTCGGTGTTGTTCCCGAACTTGCCGATCCCGTCGCATTGGAAAC
GGGACGCGGCTCGGAAAGAGATGGTCAAGCTCTTCTCCAAGGTGATCCAA
CGCCGGCGGGCGGCAGGGGCGGCGGAGGCAGAGGCCCGCACGGACATCCT
CCAGGTGTTTATGGACATCGAATACAAGGACGGGAGCAAGATCACCGACG
ACGAGGTGACGGGCTTGCTGATCGCCTTACTCTTTGCCGGGCAGCACACC
TCCTCCATCACGTCTTCCTGGACGGCCTTGTACCTGGCGCAAAACAAAGG
CTTGCAAGACCGAGTCTATGCGGAGCAAGTCGCCATCCGGGGGCAGGACA
CGGGGTCCGAGGCAGCGCTGAGGGCCTTGGATTTCGACGCGGTGGGGAAA
ATGGATATGTTGTTCAATTGCCTTCGAGAAGCTTTGCGGATGCACCCGCC
CTTGATCATGCTGATGCGGCAATGCCGGCAGGACCTGCTCGTCCAGTCCC
AGGAAGGAAAAGCCTTTACCGTCCCCAAAGGGAGCGTGGTGGCTGTCTCC
CCCTCCGTGCAGCAACGCCTCCCGTCTTTGTTCCCGGCGCCCGACAGCTT
CGACCCGGACCGGTTTGCGCCCCCTCGGGAAGAACACAAACCTCTCTTTG
CCTACGTTCCCTTTGGCGGGGGGTTGCACGCCTGCCTGGGCCAACAATTC
GCCTATGTGCAGCTGAAAACCGTCCTCTCCTTGCTCTTCTCGAAATTTGA
ACTGACTTTGGCTACCCCCGATGGTGCCGTTCCTCCCCCGAACTACCACG
CGATGGTGGTAGGGCCCACAGCGCCCTGCACTGTAAAGTACCGACGGCGG
TAA
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protein sequence of rna5398

>rna5398-protein ID=rna5398-protein|Name=rna5398|organism=Nannochloropsis gaditana|type=polypeptide|length=190bp
MASTAVKTPAANLPPDVIATALLSLDKTANLARALSSPPTQMPSTISDTV
SSTSAGSAESSPVASTSSPALYVTARVGARGRVLASVKIPVPPSSPPAFP
LEVHLKEGDIYADTPQARHDLAQAIRSSDLVLSARLDSDGRASTRDPRDL
VGQGVVYKFQSVDSAQWSRADISLTGRGAFGELVTGGKVR
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mRNA from alignment at CM002465.1:914121..914693+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5398 ID=rna5398|Name=rna5398|organism=Nannochloropsis gaditana|type=mRNA|length=573bp|location=Sequence derived from alignment at CM002465.1:914121..914693+ (Nannochloropsis gaditana)
ATGGCGAGCACTGCTGTCAAAACCCCGGCAGCAAACCTTCCCCCTGACGT
CATCGCCACCGCCCTTCTGAGCCTGGATAAAACCGCCAATCTAGCCCGAG
CactgtcttctcctcccacccagaTGCCTTCCACGATCTCTGATACTGTC
TCCTCCACAAGCGCGGGTTCTGCGGAGAGTAGCCCCGTggcctcaacctc
ctcccctgctttaTACGTCACGGCCCGCGTCGGCGCCCGGGGCCGGGTGC
TTGCTTCGGTCAAGATCCCTGTgccaccctcttcgcccCCGGCCTTTCCG
TTGGAAGTCCACTTGAAGGAGGGTGACATTTACGCAGACACCCCCCAGGC
CCGGCACGACCTTGCCCAAGCGATCCGATCTTCAGACCTCGTCTTGTCGG
CACGTCTGGACAGTGACGGGCGTGCTTCCACGCGTGATCCTAGAGATTTG
GTAGGACAGGGCGTTGTGTATAAATTCCAGTCGGTAGACTCGGCACAGTG
GTCAAGGGCGGATATTTCTCTAACCGGCCGCGGTGCATTCGGAGAGCTCG
TGACCGGGGGAAAGGTAAGGTAA
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Coding sequence (CDS) from alignment at CM002465.1:914121..914693+

>rna5398 ID=rna5398|Name=rna5398|organism=Nannochloropsis gaditana|type=CDS|length=573bp|location=Sequence derived from alignment at CM002465.1:914121..914693+ (Nannochloropsis gaditana)
ATGGCGAGCACTGCTGTCAAAACCCCGGCAGCAAACCTTCCCCCTGACGT
CATCGCCACCGCCCTTCTGAGCCTGGATAAAACCGCCAATCTAGCCCGAG
CactgtcttctcctcccacccagaTGCCTTCCACGATCTCTGATACTGTC
TCCTCCACAAGCGCGGGTTCTGCGGAGAGTAGCCCCGTggcctcaacctc
ctcccctgctttaTACGTCACGGCCCGCGTCGGCGCCCGGGGCCGGGTGC
TTGCTTCGGTCAAGATCCCTGTgccaccctcttcgcccCCGGCCTTTCCG
TTGGAAGTCCACTTGAAGGAGGGTGACATTTACGCAGACACCCCCCAGGC
CCGGCACGACCTTGCCCAAGCGATCCGATCTTCAGACCTCGTCTTGTCGG
CACGTCTGGACAGTGACGGGCGTGCTTCCACGCGTGATCCTAGAGATTTG
GTAGGACAGGGCGTTGTGTATAAATTCCAGTCGGTAGACTCGGCACAGTG
GTCAAGGGCGGATATTTCTCTAACCGGCCGCGGTGCATTCGGAGAGCTCG
TGACCGGGGGAAAGGTAAGGTAA
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Synonyms
Publications