EWM25287.1, cds5385 (CDS) Nannochloropsis gaditana

Overview
NameEWM25287.1
Unique Namecds5385
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:914121..914693 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25287.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100403g4.9947.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:914121..914693 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM25287.1 vs. NCBI_GenBank
Match: gi|585107034|gb|EWM25287.1| (hypothetical protein Naga_100403g4 [Nannochloropsis gaditana])

HSP 1 Score: 371.703 bits (953), Expect = 5.470e-130
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0
Query:    1 MASTAVKTPAANLPPDVIATALLSLDKTANLARALSSPPTQMPSTISDTVSSTSAGSAESSPVASTSSPALYVTARVGARGRVLASVKIPVPPSSPPAFPLEVHLKEGDIYADTPQARHDLAQAIRSSDLVLSARLDSDGRASTRDPRDLVGQGVVYKFQSVDSAQWSRADISLTGRGAFGELVTGGKVR 190
            MASTAVKTPAANLPPDVIATALLSLDKTANLARALSSPPTQMPSTISDTVSSTSAGSAESSPVASTSSPALYVTARVGARGRVLASVKIPVPPSSPPAFPLEVHLKEGDIYADTPQARHDLAQAIRSSDLVLSARLDSDGRASTRDPRDLVGQGVVYKFQSVDSAQWSRADISLTGRGAFGELVTGGKVR
Sbjct:    1 MASTAVKTPAANLPPDVIATALLSLDKTANLARALSSPPTQMPSTISDTVSSTSAGSAESSPVASTSSPALYVTARVGARGRVLASVKIPVPPSSPPAFPLEVHLKEGDIYADTPQARHDLAQAIRSSDLVLSARLDSDGRASTRDPRDLVGQGVVYKFQSVDSAQWSRADISLTGRGAFGELVTGGKVR 190          
BLAST of EWM25287.1 vs. NCBI_GenBank
Match: gi|551586267|ref|XP_005778225.1| (hypothetical protein EMIHUDRAFT_205940 [Emiliania huxleyi CCMP1516] >gi|485630580|gb|EOD25796.1| hypothetical protein EMIHUDRAFT_205940 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 59.6918 bits (143), Expect = 9.477e-8
Identity = 44/106 (41.51%), Postives = 56/106 (52.83%), Query Frame = 0
Query:   67 SSPALYVTAR-VGARGRVLASVKIPVPPS----SPPAFPLEVHLKEGDIYADTPQARHDLAQAIRSSDLVLSARLDSDGRASTRDPRDLVGQGVVYKFQSVDSAQW 167
            S  ALYVTAR   + G + A  K P   S    +P  FP E  L   D+   T + R   A +    DLV+SARLD DG A+TR P DLVG+G + K  S  + +W
Sbjct:   64 SGAALYVTARPASSEGALQAGAKTPPIASARFATPLLFPFEFVLTTDDL---TAEYRAADAASFNRLDLVISARLDGDGVAATRGPDDLVGRGTLSKRGSGRAEEW 166          
The following BLAST results are available for this feature:
BLAST of EWM25287.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585107034|gb|EWM25287.1|5.470e-130100.00hypothetical protein Naga_100403g4 [Nannochloropsi... [more]
gi|551586267|ref|XP_005778225.1|9.477e-841.51hypothetical protein EMIHUDRAFT_205940 [Emiliania ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5398rna5398Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications