rna5395, rna5395 (mRNA) Nannochloropsis gaditana

Overview
Namerna5395
Unique Namerna5395
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length726
Alignment locationCM002465.1:901744..902837 -

Link to JBrowse

Properties
Property NameValue
Productshort-chain dehydrogenase reductase sdr
Orig transcript idgnl|cribi|Naga_101215g1.9922.mrna
Orig protein idgnl|cribi|Naga_101215g1.9922
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:901744..902837 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101215g1gene5216Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5395rna5395-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25290.1cds5382Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5395 ID=rna5395|Name=rna5395|organism=Nannochloropsis gaditana|type=mRNA|length=726bp
AGCGTCATTCAGCCCGGCTTCGTCGCCTCCCCCATCCACGCCAAGGCCGA
GATTACCGCCCCATCCCCCCTCCTCCCCCGCATCCACCGACTACCCCCAC
CTGTCGACCCCCGCCAAGCGTGCCCACCTGGTCCGGTGCCGGGCCCATGC
CGCGTCCCCCCGTTCTACCAGTGCCGCCGTCGCGGACGCCCTCCTCCAGC
CTTTTCCCCGGACCCGTTACCCCGTCGCCGCCGTCGACCGGGTCCCCGCG
GTCGTTTTTACCTTAGCAGCAGCCATCCTGCCCGATCGGGTCATGGATTC
ATGGCTCGAGGCTTAGAGAACGGGGGGGAAGGCGGGAAGGAGGGCGGGGC
CAGGGGGAAGGGGTACCTCTCTCCTTGCCATGGTCAGCAGACTTTTCCGA
CTCGAGCATGGTCCTTCTTCTCTATTTCCTCGCTTCATTCACGCTGCAAG
GAGGGGATCTACTCCCCCCTGAAGCCCTGTGATCGCGTCTATCGCCGGAT
GGTACTTGGCTCGTTGGGCCAGTGAAACGGACCGAACGTGGTGGCTAACC
ACGCGACGCAGTGCCAGGGCGTCTCTGTGCCGGAAAAAGAAACATATATG
TAGCCTGGGGCCACGTCGAGCCACGTCGAGCCACGTCGGAAAATTCATTT
CTTTCTGTGCACTGTACAAAGCAAGGGGAGCTATGTCCTCAACGACCACC
ACCAAGGCATTCCTCCTCCCCCCGGT
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protein sequence of rna5395

>rna5395-protein ID=rna5395-protein|Name=rna5395|organism=Nannochloropsis gaditana|type=polypeptide|length=250bp
MRRTLCPSLFTHVRPALHTCVERTRQRNQARTTMGESATPVKAVPEAASS
SASPPPPTSAQIPPRPASKPVGELYRIRPWHTVIVLTLALLLDLPFLIDR
LALSPYTSHTTGGVLVTGASTGIGRDAAITLATKEPGLIVYAGVRNLRDA
KAITALHLPNLLPVTMDVTKDNSVQAARRTILKDLASRGPEPDNPLPFVG
LVNNAGVTGMAPLEHHALPEVEKIFAVNVFGLLRVTQAFLPEIRLGRREG
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mRNA from alignment at CM002465.1:901744..902837-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5395 ID=rna5395|Name=rna5395|organism=Nannochloropsis gaditana|type=mRNA|length=1094bp|location=Sequence derived from alignment at CM002465.1:901744..902837- (Nannochloropsis gaditana)
GAGGTTTGGATGTGCAGCATTCCTGTTTCCGTCCCTGCCCGTAGAGTTTT
TAAAAGGGCTTGGAGCTTTTGTCCTCGTCTGGCATAGTCACATCGCCGGC
TTCGATTAGCACCGAGCCGCCATGCGGAGAACACTTTGTCCATCCCTTTT
CACTCACGTGCGTCCTGCTCTTCACACGTGTGTAGAACGGACACGACAAC
GAAATCAAGCCCGCACCACCATGGGTGAATCTGCCACGCCAGTCAAAGCC
GTCCCTGAGGCTGCTTCGTCCTCCGCCTCCCCACCTCCCCCCACCTCAGC
ACAAATACCCCCCCGTCCGGCCTCTAAGCCCGTCGGCGAGCTCTACCGCA
TTCGACCCTGGCACACAGTGATCGTTCTCACGTTGGCCTTGCTCTTGGAC
CTGCCTTTTTTGATCGACCGGTTGGCCTTGTCCCCCTATACCTCCCATAC
CACTGGCGGGGTCCTGGTAACTGGGGCGTCCACGGGCATCGGCCGCGATG
CCGCCATCACCCTCGCAACCAAGGAGCCAGGACTGATCGTATACGCAGGC
GTGCGAAACTGTGAGAAGGAGGAGGGGGAATGAGGGGGGGGTGACGAGAA
AGATGGAAGGAAGAAGACTTGGGATGACGCCATCATTCTCGGAAGCGGTC
CTGCCGCGGGCCTTCCTCACCAGACCGCTCCCTCCCTCCCTCCTTCCCTC
CCTCCTTCCCTCCCTCCCTCCCTCTCTCCTTCTCATCCTTGTCCCTTCCT
TGTCTCGCCCCATTTCCTCCCTCCTTTCTGCAGTGAGAGACGCCAAAGCC
ATTACCGCCCTCCATTTGCCGAACCTCCTGCCCGTTACCATGGACGTGAC
CAAAGACAACAGCGTGCAAGCCGCCCGGCGTACCATCCTGAAAGACCTCG
CCTCCCGCGGACCCGAACCCGACAACCCGCTGCCATTCGTCGGCCTGGTA
AACAACGCAGGCGTGACGGGGATGGCTCCCTTGGAACACCACGCCCTTCC
CGAGGTGGAAAAAATCTTCGCCGTCAACGTCTTCGGCCTCCTAAGGGTCA
CGCAAGCCTTCCTCCCCGAGATTAGGTTGGGAAGAAGGGAGGGA
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Coding sequence (CDS) from alignment at CM002465.1:901744..902837-

>rna5395 ID=rna5395|Name=rna5395|organism=Nannochloropsis gaditana|type=CDS|length=1500bp|location=Sequence derived from alignment at CM002465.1:901744..902837- (Nannochloropsis gaditana)
TGAGAGACGCCAAAGCCATTACCGCCCTCCATTTGCCGAACCTCCTGCCC
GTTACCATGGACGTGACCAAAGACAACAGCGTGCAAGCCGCCCGGCGTAC
CATCCTGAAAGACCTCGCCTCCCGCGGACCCGAACCCGACAACCCGCTGC
CATTCGTCGGCCTGGTAAACAACGCAGGCGTGACGGGGATGGCTCCCTTG
GAACACCACGCCCTTCCCGAGGTGGAAAAAATCTTCGCCGTCAACGTCTT
CGGCCTCCTAAGGGTCACGCAAGCCTTCCTCCCCGAGATTAGGTTGGGAA
GAAGGGAGGGAATGCGGAGAACACTTTGTCCATCCCTTTTCACTCACGTG
CGTCCTGCTCTTCACACGTGTGTAGAACGGACACGACAACGAAATCAAGC
CCGCACCACCATGGGTGAATCTGCCACGCCAGTCAAAGCCGTCCCTGAGG
CTGCTTCGTCCTCCGCCTCCCCACCTCCCCCCACCTCAGCACAAATACCC
CCCCGTCCGGCCTCTAAGCCCGTCGGCGAGCTCTACCGCATTCGACCCTG
GCACACAGTGATCGTTCTCACGTTGGCCTTGCTCTTGGACCTGCCTTTTT
TGATCGACCGGTTGGCCTTGTCCCCCTATACCTCCCATACCACTGGCGGG
GTCCTGGTAACTGGGGCGTCCACGGGCATCGGCCGCGATGCCGCCATCAC
CCTCGCAACCAAGGAGCCAGGACTGATCGTATACGCAGGCGTGCGAAACT
TGAGAGACGCCAAAGCCATTACCGCCCTCCATTTGCCGAACCTCCTGCCC
GTTACCATGGACGTGACCAAAGACAACAGCGTGCAAGCCGCCCGGCGTAC
CATCCTGAAAGACCTCGCCTCCCGCGGACCCGAACCCGACAACCCGCTGC
CATTCGTCGGCCTGGTAAACAACGCAGGCGTGACGGGGATGGCTCCCTTG
GAACACCACGCCCTTCCCGAGGTGGAAAAAATCTTCGCCGTCAACGTCTT
CGGCCTCCTAAGGGTCACGCAAGCCTTCCTCCCCGAGATTAGGTTGGGAA
GAAGGGAGGGAATGCGGAGAACACTTTGTCCATCCCTTTTCACTCACGTG
CGTCCTGCTCTTCACACGTGTGTAGAACGGACACGACAACGAAATCAAGC
CCGCACCACCATGGGTGAATCTGCCACGCCAGTCAAAGCCGTCCCTGAGG
CTGCTTCGTCCTCCGCCTCCCCACCTCCCCCCACCTCAGCACAAATACCC
CCCCGTCCGGCCTCTAAGCCCGTCGGCGAGCTCTACCGCATTCGACCCTG
GCACACAGTGATCGTTCTCACGTTGGCCTTGCTCTTGGACCTGCCTTTTT
TGATCGACCGGTTGGCCTTGTCCCCCTATACCTCCCATACCACTGGCGGG
GTCCTGGTAACTGGGGCGTCCACGGGCATCGGCCGCGATGCCGCCATCAC
CCTCGCAACCAAGGAGCCAGGACTGATCGTATACGCAGGCGTGCGAAACT
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Synonyms
Publications