EWM25290.1, cds5382 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25290.1 vs. NCBI_GenBank
Match: gi|585107038|gb|EWM25290.1| (short-chain dehydrogenase reductase sdr, partial [Nannochloropsis gaditana]) HSP 1 Score: 499.975 bits (1286), Expect = 9.036e-179 Identity = 250/250 (100.00%), Postives = 250/250 (100.00%), Query Frame = 0
Query: 1 MRRTLCPSLFTHVRPALHTCVERTRQRNQARTTMGESATPVKAVPEAASSSASPPPPTSAQIPPRPASKPVGELYRIRPWHTVIVLTLALLLDLPFLIDRLALSPYTSHTTGGVLVTGASTGIGRDAAITLATKEPGLIVYAGVRNLRDAKAITALHLPNLLPVTMDVTKDNSVQAARRTILKDLASRGPEPDNPLPFVGLVNNAGVTGMAPLEHHALPEVEKIFAVNVFGLLRVTQAFLPEIRLGRREG 250
MRRTLCPSLFTHVRPALHTCVERTRQRNQARTTMGESATPVKAVPEAASSSASPPPPTSAQIPPRPASKPVGELYRIRPWHTVIVLTLALLLDLPFLIDRLALSPYTSHTTGGVLVTGASTGIGRDAAITLATKEPGLIVYAGVRNLRDAKAITALHLPNLLPVTMDVTKDNSVQAARRTILKDLASRGPEPDNPLPFVGLVNNAGVTGMAPLEHHALPEVEKIFAVNVFGLLRVTQAFLPEIRLGRREG
Sbjct: 1 MRRTLCPSLFTHVRPALHTCVERTRQRNQARTTMGESATPVKAVPEAASSSASPPPPTSAQIPPRPASKPVGELYRIRPWHTVIVLTLALLLDLPFLIDRLALSPYTSHTTGGVLVTGASTGIGRDAAITLATKEPGLIVYAGVRNLRDAKAITALHLPNLLPVTMDVTKDNSVQAARRTILKDLASRGPEPDNPLPFVGLVNNAGVTGMAPLEHHALPEVEKIFAVNVFGLLRVTQAFLPEIRLGRREG 250
BLAST of EWM25290.1 vs. NCBI_GenBank
Match: gi|553189678|ref|XP_005855050.1| (C14-demethylase / sterol 14-demethylase [Nannochloropsis gaditana CCMP526] >gi|422294011|gb|EKU21311.1| C14-demethylase / sterol 14-demethylase [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 145.591 bits (366), Expect = 5.248e-37 Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0
Query: 166 MDVTKDNSVQAARRTILKDLASRGPEPDNPLPFVGLVNNAGVTGMAPLEHHALPEVEKIFAVNVFGLLR 234
MDVTKDNSVQAARRTILKDLASRGPEPDNPLPFVGLVNNAGVTGMAPLEHHALPEVEKIFAVNVFGLLR
Sbjct: 1 MDVTKDNSVQAARRTILKDLASRGPEPDNPLPFVGLVNNAGVTGMAPLEHHALPEVEKIFAVNVFGLLR 69
BLAST of EWM25290.1 vs. NCBI_GenBank
Match: gi|553184892|ref|XP_005854162.1| (short-chain dehydrogenase reductase sdr [Nannochloropsis gaditana CCMP526] >gi|422294895|gb|EKU22195.1| short-chain dehydrogenase reductase sdr [Nannochloropsis gaditana CCMP526] >gi|585104004|gb|EWM23126.1| short-chain dehydrogenase reductase sdr [Nannochloropsis gaditana]) HSP 1 Score: 113.62 bits (283), Expect = 2.568e-26 Identity = 64/151 (42.38%), Postives = 89/151 (58.94%), Query Frame = 0
Query: 94 LPFLIDRLALSPYTSHTTGGVLVTGASTGIGRDAAITLATKEPGLIVYAGVRNLRDAKAITALHLPNLLPVTMDVTKDNSVQAARRTILKDLASRGPEPDNPLPFVGLVNNAGVTGMAPLEHHALPEVEKIFAVNVFGLLRVTQAFLPEIR 244
+PF ++ L + HTTG +LVTGASTGIG AAI LAT P + VYAGVR DA+ I ALHL NLLP+ +D T +S+ AA + LP +GL+NNAGV+ +P+E + ++ ++ NV G +TQ +P +R
Sbjct: 18 VPFAVEFLTRKSFPVHTTGAILVTGASTGIGNHAAIHLATHYPDVTVYAGVRKDVDAENIKALHLSNLLPLHIDTTDQSSMDAAVAFL----------HSTSLPIIGLINNAGVSTNSPIEFLPMAKLRQLLETNVVGPTYLTQQLIPSLR 158
BLAST of EWM25290.1 vs. NCBI_GenBank
Match: gi|553192526|ref|XP_005855590.1| (short-chain dehydrogenase reductase sdr [Nannochloropsis gaditana CCMP526] >gi|422293482|gb|EKU20782.1| short-chain dehydrogenase reductase sdr [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 112.849 bits (281), Expect = 4.626e-26 Identity = 61/136 (44.85%), Postives = 88/136 (64.71%), Query Frame = 0
Query: 111 TGG--VLVTGASTGIGRDAAITLATKEPGLIVYAGVRNLRDAKAITALHLPNLLPVTMDVTKDNSVQAARRTILKDLASRGPEPDNPLPFVGLVNNAGVTGMAPLEHHALPEVEKIFAVNVFGLLRVTQAFLPEIR 244
+GG V+++GASTGIG DAA+ LA +VYAGVR +DA+ + ++ L+PV +DVT +S+ A I D A RG +P GLVNNAG+ + +EHH + ++KI+ VNV+G+LR+TQ FLP +R
Sbjct: 31 SGGAAVVLSGASTGIGYDAAVHLADD---FVVYAGVRKEKDAEMLRSVGKSTLVPVILDVTSQDSIDEAYVKITADAAERG------IPVWGLVNNAGIMTASTVEHHDVAGMQKIYDVNVWGVLRLTQKFLPLLR 157
BLAST of EWM25290.1 vs. NCBI_GenBank
Match: gi|514686056|ref|XP_004990606.1| (oxidoreductase [Salpingoeca rosetta] >gi|326431692|gb|EGD77262.1| oxidoreductase [Salpingoeca rosetta]) HSP 1 Score: 112.464 bits (280), Expect = 7.682e-26 Identity = 68/162 (41.98%), Postives = 93/162 (57.41%), Query Frame = 0
Query: 83 VIVLTLALLLDLPFLIDRLALSPYTSHTTGGVLVTGASTGIGRDAAITLATKEPGLIVYAGVRNLRDAKAITALHLPNLLPVTMDVTKDNSVQAARRTILKDLASRGPEPDNPLPFVGLVNNAGVTGMAPLEHHALPEVEKIFAVNVFGLLRVTQAFLPEIR 244
V++ LA+LL L F+ + + H +G +L+TG STGIGR AA+ LA K G VYA VR D ++ + L+P+ MDVTK + + +A TI K +GLVNNAG++ PLE H L + +F VNVFG++ VTQAFLP IR
Sbjct: 8 VLMGILAVLLYLLFV---FPVKYFPVHDSGAILITGTSTGIGRHAAVELAKK--GYTVYATVRKQADVDSLKKEGVNTLIPIVMDVTKPDQIASAVDTIKK----------GGHKLIGLVNNAGISARVPLEAHDLDRIRSMFEVNVFGVVSVTQAFLPMIR 154
BLAST of EWM25290.1 vs. NCBI_GenBank
Match: gi|167525509|ref|XP_001747089.1| (hypothetical protein [Monosiga brevicollis MX1] >gi|163774384|gb|EDQ88013.1| predicted protein [Monosiga brevicollis MX1]) HSP 1 Score: 111.694 bits (278), Expect = 1.268e-25 Identity = 73/166 (43.98%), Postives = 91/166 (54.82%), Query Frame = 0
Query: 82 TVIVLTLALLLDLPFLIDRLALSPYTSHTTGGVLVTGASTGIGRDAAITLATKEPGLIVYAGVRNLRDAKAITALHLPNLLPVTMDVTKDNSVQAARRTILKDLASRGPEPDNPLPFVGLVNNAGVTGMAPLEHHALPEVEKIFAVNVFGLLRVTQAFLPEIRLGR 247
TV+VL AL + + L Y H G VLVTGAS+GIGR AAI LA + G VY VR RDA I L + L P+ MDVT ++ A TI K D PL + LVNNAG++ APLE + + V F VN+FGL+ TQAFLP +R +
Sbjct: 8 TVVVLAAAL-----YAVWELPRPTYHVHEQGVVLVTGASSGIGRHAAIELA--KLGYEVYGTVRKERDANDIRGLGIKTLHPIIMDVTNSEQIKNAVETISK--------LDQPL--IALVNNAGISSRAPLEAYDMNRVRNTFEVNIFGLVETTQAFLPLLRANK 156
BLAST of EWM25290.1 vs. NCBI_GenBank
Match: gi|585105737|gb|EWM24343.1| (short-chain dehydrogenase reductase sdr [Nannochloropsis gaditana]) HSP 1 Score: 112.849 bits (281), Expect = 1.664e-25 Identity = 61/136 (44.85%), Postives = 88/136 (64.71%), Query Frame = 0
Query: 111 TGG--VLVTGASTGIGRDAAITLATKEPGLIVYAGVRNLRDAKAITALHLPNLLPVTMDVTKDNSVQAARRTILKDLASRGPEPDNPLPFVGLVNNAGVTGMAPLEHHALPEVEKIFAVNVFGLLRVTQAFLPEIR 244
+GG V+++GASTGIG DAA+ LA +VYAGVR +DA+ + ++ L+PV +DVT +S+ A I D A RG +P GLVNNAG+ + +EHH + ++KI+ VNV+G+LR+TQ FLP +R
Sbjct: 123 SGGAAVVLSGASTGIGYDAAVHLADD---FVVYAGVRKEKDAEMLRSVGKSTLVPVILDVTSQDSIDEAYVKITADAAERG------IPVWGLVNNAGIMTASTVEHHDVAGMQKIYDVNVWGVLRLTQKFLPLLR 249
BLAST of EWM25290.1 vs. NCBI_GenBank
Match: gi|553192143|ref|XP_005855521.1| (1-acylglycerone phosphate reductase, partial [Nannochloropsis gaditana CCMP526] >gi|422293540|gb|EKU20840.1| 1-acylglycerone phosphate reductase, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 108.227 bits (269), Expect = 3.321e-24 Identity = 62/136 (45.59%), Postives = 82/136 (60.29%), Query Frame = 0
Query: 112 GGVLVTGASTGIGRDAAITLATKEPGLIVYAGVRNLRDAKAITALHLPNLLPVTMDVTKDNSVQAARRTILKDLASRGPEPDNPLPFVGLVNNAGVTGMAPLEHHALPEVEKIFAVNVFGLLRVTQAFLPEIRLGR 247
G +++TGASTGIG AA LA + G IVY VR D +AI AL LPNL P+ MDV + S++ TIL +L+ N +P +GLVNNAGV PLE H L ++ +F ++V G L +TQ LP IR +
Sbjct: 56 GAIVITGASTGIGNHAAQHLARQ--GYIVYCTVRKPADVEAIQALGLPNLRPIIMDVAQAKSIENGAETILAELSK------NNIPLIGLVNNAGVAQKFPLEFHPLTDLRSMFDIHVIGPLELTQRLLPAIRANK 183
BLAST of EWM25290.1 vs. NCBI_GenBank
Match: gi|585107069|gb|EWM25314.1| (short-chain dehydrogenase reductase sdr [Nannochloropsis gaditana]) HSP 1 Score: 107.842 bits (268), Expect = 4.421e-24 Identity = 62/136 (45.59%), Postives = 82/136 (60.29%), Query Frame = 0
Query: 112 GGVLVTGASTGIGRDAAITLATKEPGLIVYAGVRNLRDAKAITALHLPNLLPVTMDVTKDNSVQAARRTILKDLASRGPEPDNPLPFVGLVNNAGVTGMAPLEHHALPEVEKIFAVNVFGLLRVTQAFLPEIRLGR 247
G +++TGASTGIG AA LA + G IVY VR D +AI AL LPNL P+ MDV + S++ TIL +L+ N +P +GLVNNAGV PLE H L ++ +F ++V G L +TQ LP IR +
Sbjct: 48 GAIVITGASTGIGNHAAQHLARQ--GYIVYCTVRKPADVEAIQALGLPNLRPIIMDVAQAKSIENGAETILAELSK------NNIPLIGLVNNAGVAQKFPLEFHPLTDLRSMFDIHVIGPLELTQRLLPAIRANK 175
BLAST of EWM25290.1 vs. NCBI_GenBank
Match: gi|585107856|gb|EWM25967.1| (short-chain dehydrogenase reductase sdr, partial [Nannochloropsis gaditana]) HSP 1 Score: 103.219 bits (256), Expect = 1.963e-22 Identity = 59/135 (43.70%), Postives = 85/135 (62.96%), Query Frame = 0
Query: 110 TTGGVLVTGASTGIGRDAAITLATKEPGLIVYAGVRNLRDAKAITALHLPNLLPVTMDVTKDNSVQAARRTILKDLASRGPEPDNPLPFVGLVNNAGVTGMAPLEHHALPEVEKIFAVNVFGLLRVTQAFLPEIR 244
T+G VL+TG S+GIGR AA+ LA + G V AGVR DA+A+ L + + PV +DV K +SV+A R+ +L L ++ P VG+VNNAG+ A +E H + ++ +F VN FGL+ V+ AFLP +R
Sbjct: 57 TSGSVLLTGTSSGIGRTAAVYLAQR--GFTVLAGVRKESDAQALRDLGVSGIHPVIIDVAKASSVEACRQHVLSLLDAK-----TVPPLVGVVNNAGLLQDATVEFHDMAQMRHMFEVNYFGLISVSSAFLPLLR 184 The following BLAST results are available for this feature:
BLAST of EWM25290.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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