EWM25290.1, cds5382 (CDS) Nannochloropsis gaditana

Overview
NameEWM25290.1
Unique Namecds5382
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:902278..902716 -
Alignment locationCM002465.1:901744..902054 -

Link to JBrowse

Properties
Property NameValue
Start range901744
Start range.
Protein idEWM25290.1
Productshort-chain dehydrogenase reductase sdr
Partialtrue
Orig transcript idgnl|cribi|Naga_101215g1.9922.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:902278..902716 -
CM002465.1supercontigCM002465.1:901744..902054 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0005488binding
GO:0016491oxidoreductase activity
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR002198DH_sc/Rdtase_SDR
IPR016040NAD(P)-bd_dom
Homology
BLAST of EWM25290.1 vs. NCBI_GenBank
Match: gi|585107038|gb|EWM25290.1| (short-chain dehydrogenase reductase sdr, partial [Nannochloropsis gaditana])

HSP 1 Score: 499.975 bits (1286), Expect = 9.036e-179
Identity = 250/250 (100.00%), Postives = 250/250 (100.00%), Query Frame = 0
Query:    1 MRRTLCPSLFTHVRPALHTCVERTRQRNQARTTMGESATPVKAVPEAASSSASPPPPTSAQIPPRPASKPVGELYRIRPWHTVIVLTLALLLDLPFLIDRLALSPYTSHTTGGVLVTGASTGIGRDAAITLATKEPGLIVYAGVRNLRDAKAITALHLPNLLPVTMDVTKDNSVQAARRTILKDLASRGPEPDNPLPFVGLVNNAGVTGMAPLEHHALPEVEKIFAVNVFGLLRVTQAFLPEIRLGRREG 250
            MRRTLCPSLFTHVRPALHTCVERTRQRNQARTTMGESATPVKAVPEAASSSASPPPPTSAQIPPRPASKPVGELYRIRPWHTVIVLTLALLLDLPFLIDRLALSPYTSHTTGGVLVTGASTGIGRDAAITLATKEPGLIVYAGVRNLRDAKAITALHLPNLLPVTMDVTKDNSVQAARRTILKDLASRGPEPDNPLPFVGLVNNAGVTGMAPLEHHALPEVEKIFAVNVFGLLRVTQAFLPEIRLGRREG
Sbjct:    1 MRRTLCPSLFTHVRPALHTCVERTRQRNQARTTMGESATPVKAVPEAASSSASPPPPTSAQIPPRPASKPVGELYRIRPWHTVIVLTLALLLDLPFLIDRLALSPYTSHTTGGVLVTGASTGIGRDAAITLATKEPGLIVYAGVRNLRDAKAITALHLPNLLPVTMDVTKDNSVQAARRTILKDLASRGPEPDNPLPFVGLVNNAGVTGMAPLEHHALPEVEKIFAVNVFGLLRVTQAFLPEIRLGRREG 250          
BLAST of EWM25290.1 vs. NCBI_GenBank
Match: gi|553189678|ref|XP_005855050.1| (C14-demethylase / sterol 14-demethylase [Nannochloropsis gaditana CCMP526] >gi|422294011|gb|EKU21311.1| C14-demethylase / sterol 14-demethylase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 145.591 bits (366), Expect = 5.248e-37
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0
Query:  166 MDVTKDNSVQAARRTILKDLASRGPEPDNPLPFVGLVNNAGVTGMAPLEHHALPEVEKIFAVNVFGLLR 234
            MDVTKDNSVQAARRTILKDLASRGPEPDNPLPFVGLVNNAGVTGMAPLEHHALPEVEKIFAVNVFGLLR
Sbjct:    1 MDVTKDNSVQAARRTILKDLASRGPEPDNPLPFVGLVNNAGVTGMAPLEHHALPEVEKIFAVNVFGLLR 69          
BLAST of EWM25290.1 vs. NCBI_GenBank
Match: gi|553184892|ref|XP_005854162.1| (short-chain dehydrogenase reductase sdr [Nannochloropsis gaditana CCMP526] >gi|422294895|gb|EKU22195.1| short-chain dehydrogenase reductase sdr [Nannochloropsis gaditana CCMP526] >gi|585104004|gb|EWM23126.1| short-chain dehydrogenase reductase sdr [Nannochloropsis gaditana])

HSP 1 Score: 113.62 bits (283), Expect = 2.568e-26
Identity = 64/151 (42.38%), Postives = 89/151 (58.94%), Query Frame = 0
Query:   94 LPFLIDRLALSPYTSHTTGGVLVTGASTGIGRDAAITLATKEPGLIVYAGVRNLRDAKAITALHLPNLLPVTMDVTKDNSVQAARRTILKDLASRGPEPDNPLPFVGLVNNAGVTGMAPLEHHALPEVEKIFAVNVFGLLRVTQAFLPEIR 244
            +PF ++ L    +  HTTG +LVTGASTGIG  AAI LAT  P + VYAGVR   DA+ I ALHL NLLP+ +D T  +S+ AA   +              LP +GL+NNAGV+  +P+E   + ++ ++   NV G   +TQ  +P +R
Sbjct:   18 VPFAVEFLTRKSFPVHTTGAILVTGASTGIGNHAAIHLATHYPDVTVYAGVRKDVDAENIKALHLSNLLPLHIDTTDQSSMDAAVAFL----------HSTSLPIIGLINNAGVSTNSPIEFLPMAKLRQLLETNVVGPTYLTQQLIPSLR 158          
BLAST of EWM25290.1 vs. NCBI_GenBank
Match: gi|553192526|ref|XP_005855590.1| (short-chain dehydrogenase reductase sdr [Nannochloropsis gaditana CCMP526] >gi|422293482|gb|EKU20782.1| short-chain dehydrogenase reductase sdr [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 112.849 bits (281), Expect = 4.626e-26
Identity = 61/136 (44.85%), Postives = 88/136 (64.71%), Query Frame = 0
Query:  111 TGG--VLVTGASTGIGRDAAITLATKEPGLIVYAGVRNLRDAKAITALHLPNLLPVTMDVTKDNSVQAARRTILKDLASRGPEPDNPLPFVGLVNNAGVTGMAPLEHHALPEVEKIFAVNVFGLLRVTQAFLPEIR 244
            +GG  V+++GASTGIG DAA+ LA      +VYAGVR  +DA+ + ++    L+PV +DVT  +S+  A   I  D A RG      +P  GLVNNAG+   + +EHH +  ++KI+ VNV+G+LR+TQ FLP +R
Sbjct:   31 SGGAAVVLSGASTGIGYDAAVHLADD---FVVYAGVRKEKDAEMLRSVGKSTLVPVILDVTSQDSIDEAYVKITADAAERG------IPVWGLVNNAGIMTASTVEHHDVAGMQKIYDVNVWGVLRLTQKFLPLLR 157          
BLAST of EWM25290.1 vs. NCBI_GenBank
Match: gi|514686056|ref|XP_004990606.1| (oxidoreductase [Salpingoeca rosetta] >gi|326431692|gb|EGD77262.1| oxidoreductase [Salpingoeca rosetta])

HSP 1 Score: 112.464 bits (280), Expect = 7.682e-26
Identity = 68/162 (41.98%), Postives = 93/162 (57.41%), Query Frame = 0
Query:   83 VIVLTLALLLDLPFLIDRLALSPYTSHTTGGVLVTGASTGIGRDAAITLATKEPGLIVYAGVRNLRDAKAITALHLPNLLPVTMDVTKDNSVQAARRTILKDLASRGPEPDNPLPFVGLVNNAGVTGMAPLEHHALPEVEKIFAVNVFGLLRVTQAFLPEIR 244
            V++  LA+LL L F+     +  +  H +G +L+TG STGIGR AA+ LA K  G  VYA VR   D  ++    +  L+P+ MDVTK + + +A  TI K               +GLVNNAG++   PLE H L  +  +F VNVFG++ VTQAFLP IR
Sbjct:    8 VLMGILAVLLYLLFV---FPVKYFPVHDSGAILITGTSTGIGRHAAVELAKK--GYTVYATVRKQADVDSLKKEGVNTLIPIVMDVTKPDQIASAVDTIKK----------GGHKLIGLVNNAGISARVPLEAHDLDRIRSMFEVNVFGVVSVTQAFLPMIR 154          
BLAST of EWM25290.1 vs. NCBI_GenBank
Match: gi|167525509|ref|XP_001747089.1| (hypothetical protein [Monosiga brevicollis MX1] >gi|163774384|gb|EDQ88013.1| predicted protein [Monosiga brevicollis MX1])

HSP 1 Score: 111.694 bits (278), Expect = 1.268e-25
Identity = 73/166 (43.98%), Postives = 91/166 (54.82%), Query Frame = 0
Query:   82 TVIVLTLALLLDLPFLIDRLALSPYTSHTTGGVLVTGASTGIGRDAAITLATKEPGLIVYAGVRNLRDAKAITALHLPNLLPVTMDVTKDNSVQAARRTILKDLASRGPEPDNPLPFVGLVNNAGVTGMAPLEHHALPEVEKIFAVNVFGLLRVTQAFLPEIRLGR 247
            TV+VL  AL     + +  L    Y  H  G VLVTGAS+GIGR AAI LA  + G  VY  VR  RDA  I  L +  L P+ MDVT    ++ A  TI K         D PL  + LVNNAG++  APLE + +  V   F VN+FGL+  TQAFLP +R  +
Sbjct:    8 TVVVLAAAL-----YAVWELPRPTYHVHEQGVVLVTGASSGIGRHAAIELA--KLGYEVYGTVRKERDANDIRGLGIKTLHPIIMDVTNSEQIKNAVETISK--------LDQPL--IALVNNAGISSRAPLEAYDMNRVRNTFEVNIFGLVETTQAFLPLLRANK 156          
BLAST of EWM25290.1 vs. NCBI_GenBank
Match: gi|585105737|gb|EWM24343.1| (short-chain dehydrogenase reductase sdr [Nannochloropsis gaditana])

HSP 1 Score: 112.849 bits (281), Expect = 1.664e-25
Identity = 61/136 (44.85%), Postives = 88/136 (64.71%), Query Frame = 0
Query:  111 TGG--VLVTGASTGIGRDAAITLATKEPGLIVYAGVRNLRDAKAITALHLPNLLPVTMDVTKDNSVQAARRTILKDLASRGPEPDNPLPFVGLVNNAGVTGMAPLEHHALPEVEKIFAVNVFGLLRVTQAFLPEIR 244
            +GG  V+++GASTGIG DAA+ LA      +VYAGVR  +DA+ + ++    L+PV +DVT  +S+  A   I  D A RG      +P  GLVNNAG+   + +EHH +  ++KI+ VNV+G+LR+TQ FLP +R
Sbjct:  123 SGGAAVVLSGASTGIGYDAAVHLADD---FVVYAGVRKEKDAEMLRSVGKSTLVPVILDVTSQDSIDEAYVKITADAAERG------IPVWGLVNNAGIMTASTVEHHDVAGMQKIYDVNVWGVLRLTQKFLPLLR 249          
BLAST of EWM25290.1 vs. NCBI_GenBank
Match: gi|553192143|ref|XP_005855521.1| (1-acylglycerone phosphate reductase, partial [Nannochloropsis gaditana CCMP526] >gi|422293540|gb|EKU20840.1| 1-acylglycerone phosphate reductase, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 108.227 bits (269), Expect = 3.321e-24
Identity = 62/136 (45.59%), Postives = 82/136 (60.29%), Query Frame = 0
Query:  112 GGVLVTGASTGIGRDAAITLATKEPGLIVYAGVRNLRDAKAITALHLPNLLPVTMDVTKDNSVQAARRTILKDLASRGPEPDNPLPFVGLVNNAGVTGMAPLEHHALPEVEKIFAVNVFGLLRVTQAFLPEIRLGR 247
            G +++TGASTGIG  AA  LA +  G IVY  VR   D +AI AL LPNL P+ MDV +  S++    TIL +L+       N +P +GLVNNAGV    PLE H L ++  +F ++V G L +TQ  LP IR  +
Sbjct:   56 GAIVITGASTGIGNHAAQHLARQ--GYIVYCTVRKPADVEAIQALGLPNLRPIIMDVAQAKSIENGAETILAELSK------NNIPLIGLVNNAGVAQKFPLEFHPLTDLRSMFDIHVIGPLELTQRLLPAIRANK 183          
BLAST of EWM25290.1 vs. NCBI_GenBank
Match: gi|585107069|gb|EWM25314.1| (short-chain dehydrogenase reductase sdr [Nannochloropsis gaditana])

HSP 1 Score: 107.842 bits (268), Expect = 4.421e-24
Identity = 62/136 (45.59%), Postives = 82/136 (60.29%), Query Frame = 0
Query:  112 GGVLVTGASTGIGRDAAITLATKEPGLIVYAGVRNLRDAKAITALHLPNLLPVTMDVTKDNSVQAARRTILKDLASRGPEPDNPLPFVGLVNNAGVTGMAPLEHHALPEVEKIFAVNVFGLLRVTQAFLPEIRLGR 247
            G +++TGASTGIG  AA  LA +  G IVY  VR   D +AI AL LPNL P+ MDV +  S++    TIL +L+       N +P +GLVNNAGV    PLE H L ++  +F ++V G L +TQ  LP IR  +
Sbjct:   48 GAIVITGASTGIGNHAAQHLARQ--GYIVYCTVRKPADVEAIQALGLPNLRPIIMDVAQAKSIENGAETILAELSK------NNIPLIGLVNNAGVAQKFPLEFHPLTDLRSMFDIHVIGPLELTQRLLPAIRANK 175          
BLAST of EWM25290.1 vs. NCBI_GenBank
Match: gi|585107856|gb|EWM25967.1| (short-chain dehydrogenase reductase sdr, partial [Nannochloropsis gaditana])

HSP 1 Score: 103.219 bits (256), Expect = 1.963e-22
Identity = 59/135 (43.70%), Postives = 85/135 (62.96%), Query Frame = 0
Query:  110 TTGGVLVTGASTGIGRDAAITLATKEPGLIVYAGVRNLRDAKAITALHLPNLLPVTMDVTKDNSVQAARRTILKDLASRGPEPDNPLPFVGLVNNAGVTGMAPLEHHALPEVEKIFAVNVFGLLRVTQAFLPEIR 244
            T+G VL+TG S+GIGR AA+ LA +  G  V AGVR   DA+A+  L +  + PV +DV K +SV+A R+ +L  L ++        P VG+VNNAG+   A +E H + ++  +F VN FGL+ V+ AFLP +R
Sbjct:   57 TSGSVLLTGTSSGIGRTAAVYLAQR--GFTVLAGVRKESDAQALRDLGVSGIHPVIIDVAKASSVEACRQHVLSLLDAK-----TVPPLVGVVNNAGLLQDATVEFHDMAQMRHMFEVNYFGLISVSSAFLPLLR 184          
The following BLAST results are available for this feature:
BLAST of EWM25290.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107038|gb|EWM25290.1|9.036e-179100.00short-chain dehydrogenase reductase sdr, partial [... [more]
gi|553189678|ref|XP_005855050.1|5.248e-37100.00C14-demethylase / sterol 14-demethylase [Nannochlo... [more]
gi|553184892|ref|XP_005854162.1|2.568e-2642.38short-chain dehydrogenase reductase sdr [Nannochlo... [more]
gi|553192526|ref|XP_005855590.1|4.626e-2644.85short-chain dehydrogenase reductase sdr [Nannochlo... [more]
gi|514686056|ref|XP_004990606.1|7.682e-2641.98oxidoreductase [Salpingoeca rosetta] >gi|326431692... [more]
gi|167525509|ref|XP_001747089.1|1.268e-2543.98hypothetical protein [Monosiga brevicollis MX1] >g... [more]
gi|585105737|gb|EWM24343.1|1.664e-2544.85short-chain dehydrogenase reductase sdr [Nannochlo... [more]
gi|553192143|ref|XP_005855521.1|3.321e-2445.591-acylglycerone phosphate reductase, partial [Nann... [more]
gi|585107069|gb|EWM25314.1|4.421e-2445.59short-chain dehydrogenase reductase sdr [Nannochlo... [more]
gi|585107856|gb|EWM25967.1|1.963e-2243.70short-chain dehydrogenase reductase sdr, partial [... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5395rna5395Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications