rna5394, rna5394 (mRNA) Nannochloropsis gaditana

Overview
Namerna5394
Unique Namerna5394
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1994
Alignment locationCM002465.1:900608..901333 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100240g7.2370.mrna
Orig protein idgnl|cribi|Naga_100240g7.2370
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:900608..901333 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100240g7gene5215Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25292.1cds5381Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5394rna5394-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5394 ID=rna5394|Name=rna5394|organism=Nannochloropsis gaditana|type=mRNA|length=1994bp
GAATCTCCTCTCAGCCTCCCCACCGAATTCAAACTACCGCCTCCTAATTT
TCTATACTTCGCACTGTGTATTTCCTTGTCATAACAGGCGTAGTGGAGGG
ATAGACGAGATGGCTTCTCGATCATTCCCATCGATTTCGTTTCAGCGCAT
TATGGCTTTTGTGAAAGCTAGGCCGGGTATTGTAGCGGGCGGAGCTCTAC
TAGCAGCGTACTTCCTTGACCCGGACGAAAGAAGTGAAGACGATGTGGAT
GAGCTACCCTTGCCAAGCTTCCATAATAAATTATTACAAAATCAGAACCG
CTCCAATCGTCATATCCTGCCGCCCTCAAACCTAATCCACAGTGTCACAG
CTGGCTGTCTTTCTGCAAAGAAGAGCCTCGACACGCACCCAACTGGAACT
GAGGGGACTCTTGTGACCAATGCGGCCCACTTCGAAAGCCTTTATCAGCT
AGGTCCCAAGTTAGGGACAGGCGCGTTTGCAGTCGTGTATAAATGCACGC
CAAAATCCACGTCGAGCAACGTGGCCGCAGTGAAAGTTTTTGATTTGAGT
CGGGTTCCCGCGAAGAAGCAAGCCAGGATCAGGGCGGACATCCATAAGGA
GTACACCATCCTCCAATCCCTCCAGCACGATCGCATCGTCCAAGTCTACG
ACCTGTTCGAGGCCCCCACGCAAAACAAGGTGTACGTGGTGATGGAATTT
TGCCAAGGCGGGGAGCTCTTCGAACGCATCGTCGCCAAGACGACCTACAA
CGAGAAAGAAGCCCGAGACGTGATCCGGACGCTCCTGACCGCCCTGGCCT
TCTGCCACGAGGACGCAGGGGTCGTGCACAGGGATTTGAAGCCGGAGAAT
CTCCTCCTGGAAAGCGAAACGGACGACCTGCACATCAAAGTGGCGGACTT
CGGGGCCGCCTGTCTGATCACCGAATCCGACTGTCTGTCTCACTACTGCG
GCACGCCTTCCTACACGGCGCCTGAGATTCTGGCTCGTCAGAAATATGGG
CCCAAGGTGGACGTGTGGAGCGCCGGCATCATTGCCTACATCCTCTTGGG
AGGGTACCCTCCTTTTGCCGACAACCAGGACCAGCTCCGAAAGCGGCACA
CCTTCTATTTCCATTCGCCCGAATGGGATGCTGTGTCCCCCGAGGCCAAA
GACCTCATTAGCCGTCTTCTCCACCGAGACCCGCAGCAGAGGCTCTCGGC
GCGGGAGGCCTTGGCCCATGCCTGGTTCGAGAAGGAGAAAGAGGAGTTGG
AAGATCGGGAGCTGCCGGCCGCAAAGGAAGGGATCGAGAAATTCAACGCC
TTGCGGTGGGTGGGGAGGGAGGGAGGGAGGGAGGGAGGGAAGGAGGGAGG
GAGGGAGGGAGGGAGGGAGGGAAGGACTATGCAAGGGCCACGTCTTCAGC
CATGCTAGGGGCCCGGGATCTATCTGTTCCACCTAAGCATCCATCCCGCC
CCATACTGCCCCCCCCCGCCCCTCCCTTCCTGTCTCACCGCATTCGTTTT
AGGAAATTGCGCGGGGCGGTGAAAGCCATCATGGCCACGGCCAAGATGAG
AAAGCTTTTGTCCAGGGAGGAATAGGGGAAAATGCCGCAGACAAGAGTGA
AAAGCAAGGGAGGAGAGGGCGTCATTGTAAGGGCAACAATTTGGACAGGT
CCTTAAGAACGAGGCCCCGCCAGGGTCGGGGCAGGGGGAAGGGAGGAAGG
GGAGAAGGAAAGAGAGGGAGGGAAAGGACCGTGGGTGGACGACCTGGACC
TGGTGCTTCGTTCCCTCCAACGGGCGACAGGGATACGGCGGTCGTACGTA
AGACTAGCGAAGCCTCCGACTTAAAATTTGGGCGCGGGGTGCAAGGGTGT
GTGCCAGGAGGGTGGCTTGAAGGTTCAGGAGAGGAAGGGTACCGGGGGGA
GGAGGAATGCCTTGGTGGTGGTCGTTGAGGACATAGCTCCCCTTGCTTTG
TACAGTGCACAGAAAGAAATGAATTTTCCGACGTGGCTCGACGT
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protein sequence of rna5394

>rna5394-protein ID=rna5394-protein|Name=rna5394|organism=Nannochloropsis gaditana|type=polypeptide|length=174bp
SVIQPGFVASPIHAKAEITAPSPLLPRIHRLPPPVDPRQACPPGPVPGPC
RVPPFYQCRRRGRPPPAFSPDPLPRRRRRPGPRGRFYLSSSHPARSGHGF
MARGLENGGEGGKEGGARGKGYLSPCHGQQTFPTRAWSFFSISSLHSRCK
EGIYSPLKPCDRVYRRMVLGSLGQ
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mRNA from alignment at CM002465.1:900608..901333-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5394 ID=rna5394|Name=rna5394|organism=Nannochloropsis gaditana|type=mRNA|length=726bp|location=Sequence derived from alignment at CM002465.1:900608..901333- (Nannochloropsis gaditana)
AGCGTCATTCAGCCCGGCTTCGTCGCCTCCCCCATCCACGCCAAGGCCGA
GATTACCGCCCCATCCCCCCTCCTCCCCCGCATCCACCGACTACCCCCAC
CTGTCGACCCCCGCCAAGCGTGCCCACCTGGTCCGGTGCCGGGCCCATGC
CGCGTCCCCCCGTTCTACCAGTGCCGCCGTCGCGGACGCCCTCCTCCAGC
CTTTTCCCCGGACCCGTTACCCCGTCGCCGCCGTCGACCGGGTCCCCGCG
GTCGTTTTTACCTTAGCAGCAGCCATCCTGCCCGATCGGGTCATGGATTC
ATGGCTCGAGGCTTAGAGAACGGGGGGGAAGGCGGGAAGGAGGGCGGGGC
CAGGGGGAAGGGGTACCTCTCTCCTTGCCATGGTCAGCAGACTTTTCCGA
CTCGAGCATGGTCCTTCTTCTCTATTTCCTCGCTTCATTCACGCTGCAAG
GAGGGGATCTACTCCCCCCTGAAGCCCTGTGATCGCGTCTATCGCCGGAT
GGTACTTGGCTCGTTGGGCCAGTGAAACGGACCGAACGTGGTGGCTAACC
ACGCGACGCAGTGCCAGGGCGTCTCTGTGCCGGAAAAAGAAACATATATG
TAGCCTGGGGCCACGTCGAGCCACGTCGAGCCACGTCGGAAAATTCATTT
CTTTCTGTGCACTGTACAAAGCAAGGGGAGCTATGTCCTCAACGACCACC
ACCAAGGCATTCCTCCTCCCCCCGGT
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Coding sequence (CDS) from alignment at CM002465.1:900608..901333-

>rna5394 ID=rna5394|Name=rna5394|organism=Nannochloropsis gaditana|type=CDS|length=525bp|location=Sequence derived from alignment at CM002465.1:900608..901333- (Nannochloropsis gaditana)
AGCGTCATTCAGCCCGGCTTCGTCGCCTCCCCCATCCACGCCAAGGCCGA
GATTACCGCCCCATCCCCCCTCCTCCCCCGCATCCACCGACTACCCCCAC
CTGTCGACCCCCGCCAAGCGTGCCCACCTGGTCCGGTGCCGGGCCCATGC
CGCGTCCCCCCGTTCTACCAGTGCCGCCGTCGCGGACGCCCTCCTCCAGC
CTTTTCCCCGGACCCGTTACCCCGTCGCCGCCGTCGACCGGGTCCCCGCG
GTCGTTTTTACCTTAGCAGCAGCCATCCTGCCCGATCGGGTCATGGATTC
ATGGCTCGAGGCTTAGAGAACGGGGGGGAAGGCGGGAAGGAGGGCGGGGC
CAGGGGGAAGGGGTACCTCTCTCCTTGCCATGGTCAGCAGACTTTTCCGA
CTCGAGCATGGTCCTTCTTCTCTATTTCCTCGCTTCATTCACGCTGCAAG
GAGGGGATCTACTCCCCCCTGAAGCCCTGTGATCGCGTCTATCGCCGGAT
GGTACTTGGCTCGTTGGGCCAGTGA
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Synonyms
Publications