EWM25292.1, cds5381 (CDS) Nannochloropsis gaditana

Overview
NameEWM25292.1
Unique Namecds5381
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:900809..901333 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25292.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_100240g7.2370.mrna
GbkeyCDS
End range.
End range901333
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:900809..901333 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
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BLAST of EWM25292.1 vs. NCBI_GenBank
Match: gi|585107042|gb|EWM25292.1| (hypothetical protein Naga_100240g7, partial [Nannochloropsis gaditana])

HSP 1 Score: 340.887 bits (873), Expect = 2.478e-118
Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 0 
Query:    1 SVIQPGFVASPIHAKAEITAPSPLLPRIHRLPPPVDPRQACPPGPVPGPCRVPPFYQCRRRGRPPPAFSPDPLPRRRRRPGPRGRFYLSSSHPARSGHGFMARGLENGGEGGKEGGARGKGYLSPCHGQQTFPTRAWSFFSISSLHSRCKEGIYSPLKPCDRVYRRMVLGSLGQ 174
            SVIQPGFVASPIHAKAEITAPSPLLPRIHRLPPPVDPRQACPPGPVPGPCRVPPFYQCRRRGRPPPAFSPDPLPRRRRRPGPRGRFYLSSSHPARSGHGFMARGLENGGEGGKEGGARGKGYLSPCHGQQTFPTRAWSFFSISSLHSRCKEGIYSPLKPCDRVYRRMVLGSLGQ
Sbjct:    1 SVIQPGFVASPIHAKAEITAPSPLLPRIHRLPPPVDPRQACPPGPVPGPCRVPPFYQCRRRGRPPPAFSPDPLPRRRRRPGPRGRFYLSSSHPARSGHGFMARGLENGGEGGKEGGARGKGYLSPCHGQQTFPTRAWSFFSISSLHSRCKEGIYSPLKPCDRVYRRMVLGSLGQ 174
The following BLAST results are available for this feature:
BLAST of EWM25292.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585107042|gb|EWM25292.1|2.478e-118100.00hypothetical protein Naga_100240g7, partial [Nanno... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5394rna5394Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications