rna5392, rna5392 (mRNA) Nannochloropsis gaditana

Overview
Namerna5392
Unique Namerna5392
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1407
Alignment locationCM002465.1:894439..895505 -

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Properties
Property NameValue
Productsignal peptidase i
Orig transcript idgnl|cribi|Naga_100240g5.2374.mrna
Orig protein idgnl|cribi|Naga_100240g5.2374
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:894439..895505 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100240g5gene5213Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5392rna5392-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25296.1cds5379Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5392 ID=rna5392|Name=rna5392|organism=Nannochloropsis gaditana|type=mRNA|length=1407bp
ATGACCTCGCATACGAAAGATCTTGGCCCTGGCTGTGCTCTACCCGGGCC
GCGACTCGGGCTCCTCCATCCCCCAGCAAGGGGCAGTCTCTCCCTCCCGA
ACAGCACCGACGCCAGCCAAGGCCATTGCCACGACCCCAGCAAGAGCCAC
GACTCCACGAGCAGCAACCGACTCGGAGTCACGTCGGTGCGGTCGTTTGC
GAACGGTAGGGCTCTGGGAGGCCCCGCCGGTTTGTCCGCGGCAACGGCCG
CTTTTTTCTACCCAAAACAGAAAGCAGCAGCGTCGGATACGGGCGGGAAC
GGAGGGAACAAGGGCGATAATCGTGGTGACGTGGACGAGGAGGTGGTCAT
CATTCCTTCCATTCAGACTGGGCGACCCGAAGCGGAGGGCGATTCGGGGA
CTGGGAAGGAACCGAGACTACTGGACACAAGAAGCGCAGCACCCGGGACG
ACAGACGCTCCAGGCACATCTGTGGGGAGCCCTGAGCCTATCGCTGCACA
GACAAGGGCGGGTTGTGCTTCCATTCCGTCAGAGCCCGGAGCAGTCGCAG
GCCAAGCGTCGGTCTTGTCCCCGCCCTCCTCTGCCTCGTTGCGCCCTCCC
CCTCCCGCAGAGGTTGGGACGGAGGGGAGTGGACCAGAAAGGGAGGGAGG
AAGGGAGGGAGGGCGGGAGGAAGGGGGGGCACCGGCCGTGAAGAGGGACG
TGAATGAGGTGGTTGAGGGGCGTGCGAGCAGTCAGGTGGGTAATACAGCC
GACGCCGGGGCAGCAATACAACCGGCGGATAGGACCGAGGAGGAGTGTGT
CTTGGTATCGGACGGATTCAATCCTGAGAAGGAGAGACCCACAGAAGACG
AGAAAGGGGAAGGGGAGGAGGAGGACGAAGCCCGGGAGGCCCAAGGGGGT
GAGGCTGGCGGGCGGACGTCCCTCTCCTCGCCTCCACTGGGGAAAATGCT
CGTTGAAATCCTCAGCCCGCAGGTTGCTCATCCCACGGACATCAAGGCGG
CTGATCCTCCCACTTCCTTGGCAAAACATGTGCCGCCTGCAGAAAGCTTG
CCTCCCTCGACCTCCTATGGTCCCGCAGTGGTCTCGGCAGGGGCCAAAAA
GAAGCAGCAATCCTCGCTCATGCACTATTGGGGTAGAAAAGGGAGGAACA
CCGCTCCGCCTGCGGGTCGCGAGGAGCTAGGGTTCAGGTCTGGGATCGTC
TGGCTTATGCTTCTCGCTCGGTCATCTAGCACCCAGGTCTACGCGTTCAT
TAATCATTTCGTCACTGTCTGTTCGCATAAAGTGCAAGAAACATCAAAGG
TGGCTTTCAAAAAAGCCTTAGGAAAACTGTCGTGGAAAGAAAGCGAGATT
CTTACATATATGTGTAAGCGTGGAGGAAACGCGAAGGAGGGAAGAGGCGG
ACAATAG
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protein sequence of rna5392

>rna5392-protein ID=rna5392-protein|Name=rna5392|organism=Nannochloropsis gaditana|type=polypeptide|length=328bp
MAFRYAACFLLTIAFIIILSPVFAFKSSLCTRGLSSYVAVGRLCPKSSIT
SLSNGNGRRPPFPPSRTIFPPLFASDSGNSGEGKEEEEGGAEEGSLLDKA
KSFFSDPENRKDTTLFVTSFLISLGIRAFIVEPRYIPSLSMYPTFLVGDQ
LAVEKVTKTYKNYERGDVVVFNPTQGYQEYVSRDPYITDKSRINEALIKR
IIAKGGDVVEVKDGQLFVNGVAQEEKYIAEGPAYVWGPRRVPDGMYMVLG
DNRNHSLDSHIWGFLPKENIIGRAICKYWPPWRLGHCGHTHTKKAILMRM
DDWKQAQQRTRDEIATRTVGVPKACLHA
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mRNA from alignment at CM002465.1:894439..895505-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5392 ID=rna5392|Name=rna5392|organism=Nannochloropsis gaditana|type=mRNA|length=1067bp|location=Sequence derived from alignment at CM002465.1:894439..895505- (Nannochloropsis gaditana)
ATGGCTTTCCGCTACGCCGCATGTTTCCTCCTCACCATCGCCTTCATAAT
TATCCTAAGTCCTGTCTTCGCATTTAAGTCCTCCCTATGCACGCGTGGAT
TGTCTTCCTACGTCGCAGTCGGGCGCCTGTGTCCAAAGAGCAGCATTACC
AGTCTGAGCAACGGCAATGGAAGGCGACCTCCCTTCCCTCCCTCCAGAAC
TATCTTTCCACCACTCTTTGCATCCGACAGCGGGAACAGCGGAGAAGGAA
AAGAAGAAGAGGAGGGAGGTGCGGAAGAAGGAAGCTTGTTGGACAAGGCC
AAATCCTTTTTTTCGGACCCGGAAAATCGGAAGGATACTACGCTCTTCGT
CACCTCCTTCCTCATCTCCTTAGGGATCAGGGCTTTCATTGTCGAGCCCC
GCTACATTCCATCCCTGAGCATGTACCCTACCTTCCTGGTGGGTGACCAA
TTGGCCGTGGAGAAAGTGACCAAGACATACAAAAACTACGAACGGGGGGA
CGTGGTAGTGTTCAATCCCACGCAAGGCTATCAAGAATATGTGAGCCGAG
ACCCGTACATCACAGACAAAAGCCGCATTAACGAGGCCTTGATCAAGCGT
ATCATTGCGAAAGGCGGGGACGTGGTCGAGGTGAAAGACGGACAACTCTT
TGTGAACGGCGTGGCGCAAGAGGAGAAGTACATTGCGGAGGGCCCGGCCT
ATGTCTGGGGTCCGCGACGGGTCCCGGATGGGATGTACATGGTGCTGGGG
GACAACAGAAATCATTCGTTGGACTCGCACATCTGGGGCTTTCTGCCCAA
GGAGAACATTATTGGCCGGGCGATCTGTAAGTATTGGCCACCCTGGCGGT
TGGGGTTGGTGGAAGGGCCGCTCAGCTCTTGATTGGAACGAGGCAGGGAG
GGAGGGAAAGGAAAATGACGGTGTGTGTAGAAAGGCACTGTGGACACACG
CACACAAAGAAAGCGATTCTTATGCGTATGGATGACTGGAAGCAAGCTCA
ACAAAGAACCCGCGACGAGATTGCTACCAGGACAGTGGGCGTACCCAAGG
CGTGTCTGCATGCATAG
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Coding sequence (CDS) from alignment at CM002465.1:894439..895505-

>rna5392 ID=rna5392|Name=rna5392|organism=Nannochloropsis gaditana|type=CDS|length=1974bp|location=Sequence derived from alignment at CM002465.1:894439..895505- (Nannochloropsis gaditana)
GCACTGTGGACACACGCACACAAAGAAAGCGATTCTTATGCGTATGGATG
ACTGGAAGCAAGCTCAACAAAGAACCCGCGACGAGATTGCTACCAGGACA
GTGGGCGTACCCAAGGCGTGTCTGCATGCATAGATGGCTTTCCGCTACGC
CGCATGTTTCCTCCTCACCATCGCCTTCATAATTATCCTAAGTCCTGTCT
TCGCATTTAAGTCCTCCCTATGCACGCGTGGATTGTCTTCCTACGTCGCA
GTCGGGCGCCTGTGTCCAAAGAGCAGCATTACCAGTCTGAGCAACGGCAA
TGGAAGGCGACCTCCCTTCCCTCCCTCCAGAACTATCTTTCCACCACTCT
TTGCATCCGACAGCGGGAACAGCGGAGAAGGAAAAGAAGAAGAGGAGGGA
GGTGCGGAAGAAGGAAGCTTGTTGGACAAGGCCAAATCCTTTTTTTCGGA
CCCGGAAAATCGGAAGGATACTACGCTCTTCGTCACCTCCTTCCTCATCT
CCTTAGGGATCAGGGCTTTCATTGTCGAGCCCCGCTACATTCCATCCCTG
AGCATGTACCCTACCTTCCTGGTGGGTGACCAATTGGCCGTGGAGAAAGT
GACCAAGACATACAAAAACTACGAACGGGGGGACGTGGTAGTGTTCAATC
CCACGCAAGGCTATCAAGAATATGTGAGCCGAGACCCGTACATCACAGAC
AAAAGCCGCATTAACGAGGCCTTGATCAAGCGTATCATTGCGAAAGGCGG
GGACGTGGTCGAGGTGAAAGACGGACAACTCTTTGTGAACGGCGTGGCGC
AAGAGGAGAAGTACATTGCGGAGGGCCCGGCCTATGTCTGGGGTCCGCGA
CGGGTCCCGGATGGGATGTACATGGTGCTGGGGGACAACAGAAATCATTC
GTTGGACTCGCACATCTGGGGCTTTCTGCCCAAGGAGAACATTATTGGCC
GGGCGATCTGTAAGTATTGGCCACCCTGGCGGTTGGGGCACTGTGGACAC
ACGCACACAAAGAAAGCGATTCTTATGCGTATGGATGACTGGAAGCAAGC
TCAACAAAGAACCCGCGACGAGATTGCTACCAGGACAGTGGGCGTACCCA
AGGCGTGTCTGCATGCATAGATGGCTTTCCGCTACGCCGCATGTTTCCTC
CTCACCATCGCCTTCATAATTATCCTAAGTCCTGTCTTCGCATTTAAGTC
CTCCCTATGCACGCGTGGATTGTCTTCCTACGTCGCAGTCGGGCGCCTGT
GTCCAAAGAGCAGCATTACCAGTCTGAGCAACGGCAATGGAAGGCGACCT
CCCTTCCCTCCCTCCAGAACTATCTTTCCACCACTCTTTGCATCCGACAG
CGGGAACAGCGGAGAAGGAAAAGAAGAAGAGGAGGGAGGTGCGGAAGAAG
GAAGCTTGTTGGACAAGGCCAAATCCTTTTTTTCGGACCCGGAAAATCGG
AAGGATACTACGCTCTTCGTCACCTCCTTCCTCATCTCCTTAGGGATCAG
GGCTTTCATTGTCGAGCCCCGCTACATTCCATCCCTGAGCATGTACCCTA
CCTTCCTGGTGGGTGACCAATTGGCCGTGGAGAAAGTGACCAAGACATAC
AAAAACTACGAACGGGGGGACGTGGTAGTGTTCAATCCCACGCAAGGCTA
TCAAGAATATGTGAGCCGAGACCCGTACATCACAGACAAAAGCCGCATTA
ACGAGGCCTTGATCAAGCGTATCATTGCGAAAGGCGGGGACGTGGTCGAG
GTGAAAGACGGACAACTCTTTGTGAACGGCGTGGCGCAAGAGGAGAAGTA
CATTGCGGAGGGCCCGGCCTATGTCTGGGGTCCGCGACGGGTCCCGGATG
GGATGTACATGGTGCTGGGGGACAACAGAAATCATTCGTTGGACTCGCAC
ATCTGGGGCTTTCTGCCCAAGGAGAACATTATTGGCCGGGCGATCTGTAA
GTATTGGCCACCCTGGCGGTTGGG
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Synonyms
Publications