EWM25296.1, cds5379 (CDS) Nannochloropsis gaditana

Overview
NameEWM25296.1
Unique Namecds5379
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:894652..895505 -
Alignment locationCM002465.1:894439..894571 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25296.1
Productsignal peptidase i
Orig transcript idgnl|cribi|Naga_100240g5.2374.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:894652..895505 -
CM002465.1supercontigCM002465.1:894439..894571 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0008236serine-type peptidase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005739mitochondrion
GO:0016021integral component of membrane
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0019538protein metabolic process
GO:0006508proteolysis
Vocabulary: INTERPRO
TermDefinition
IPR015927Peptidase_S24_S26A/B/C
IPR019756Pept_S26A_signal_pept_1_Ser-AS
IPR019757Pept_S26A_signal_pept_1_Lys-AS
IPR019758Pept_S26A_signal_pept_1_CS
IPR028360Peptidase_S24/S26_b-rbn
IPR019533Peptidase_S26
IPR000223Pept_S26A_signal_pept_1
Homology
BLAST of EWM25296.1 vs. NCBI_GenBank
Match: gi|585107046|gb|EWM25296.1| (signal peptidase i [Nannochloropsis gaditana])

HSP 1 Score: 682.945 bits (1761), Expect = 0.000e+0
Identity = 328/328 (100.00%), Postives = 328/328 (100.00%), Query Frame = 0
Query:    1 MAFRYAACFLLTIAFIIILSPVFAFKSSLCTRGLSSYVAVGRLCPKSSITSLSNGNGRRPPFPPSRTIFPPLFASDSGNSGEGKEEEEGGAEEGSLLDKAKSFFSDPENRKDTTLFVTSFLISLGIRAFIVEPRYIPSLSMYPTFLVGDQLAVEKVTKTYKNYERGDVVVFNPTQGYQEYVSRDPYITDKSRINEALIKRIIAKGGDVVEVKDGQLFVNGVAQEEKYIAEGPAYVWGPRRVPDGMYMVLGDNRNHSLDSHIWGFLPKENIIGRAICKYWPPWRLGHCGHTHTKKAILMRMDDWKQAQQRTRDEIATRTVGVPKACLHA 328
            MAFRYAACFLLTIAFIIILSPVFAFKSSLCTRGLSSYVAVGRLCPKSSITSLSNGNGRRPPFPPSRTIFPPLFASDSGNSGEGKEEEEGGAEEGSLLDKAKSFFSDPENRKDTTLFVTSFLISLGIRAFIVEPRYIPSLSMYPTFLVGDQLAVEKVTKTYKNYERGDVVVFNPTQGYQEYVSRDPYITDKSRINEALIKRIIAKGGDVVEVKDGQLFVNGVAQEEKYIAEGPAYVWGPRRVPDGMYMVLGDNRNHSLDSHIWGFLPKENIIGRAICKYWPPWRLGHCGHTHTKKAILMRMDDWKQAQQRTRDEIATRTVGVPKACLHA
Sbjct:    1 MAFRYAACFLLTIAFIIILSPVFAFKSSLCTRGLSSYVAVGRLCPKSSITSLSNGNGRRPPFPPSRTIFPPLFASDSGNSGEGKEEEEGGAEEGSLLDKAKSFFSDPENRKDTTLFVTSFLISLGIRAFIVEPRYIPSLSMYPTFLVGDQLAVEKVTKTYKNYERGDVVVFNPTQGYQEYVSRDPYITDKSRINEALIKRIIAKGGDVVEVKDGQLFVNGVAQEEKYIAEGPAYVWGPRRVPDGMYMVLGDNRNHSLDSHIWGFLPKENIIGRAICKYWPPWRLGHCGHTHTKKAILMRMDDWKQAQQRTRDEIATRTVGVPKACLHA 328          
BLAST of EWM25296.1 vs. NCBI_GenBank
Match: gi|553189674|ref|XP_005855049.1| (signal peptidase I [Nannochloropsis gaditana CCMP526] >gi|422294010|gb|EKU21310.1| signal peptidase I [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 587.8 bits (1514), Expect = 0.000e+0
Identity = 285/285 (100.00%), Postives = 285/285 (100.00%), Query Frame = 0
Query:    1 MAFRYAACFLLTIAFIIILSPVFAFKSSLCTRGLSSYVAVGRLCPKSSITSLSNGNGRRPPFPPSRTIFPPLFASDSGNSGEGKEEEEGGAEEGSLLDKAKSFFSDPENRKDTTLFVTSFLISLGIRAFIVEPRYIPSLSMYPTFLVGDQLAVEKVTKTYKNYERGDVVVFNPTQGYQEYVSRDPYITDKSRINEALIKRIIAKGGDVVEVKDGQLFVNGVAQEEKYIAEGPAYVWGPRRVPDGMYMVLGDNRNHSLDSHIWGFLPKENIIGRAICKYWPPWRLG 285
            MAFRYAACFLLTIAFIIILSPVFAFKSSLCTRGLSSYVAVGRLCPKSSITSLSNGNGRRPPFPPSRTIFPPLFASDSGNSGEGKEEEEGGAEEGSLLDKAKSFFSDPENRKDTTLFVTSFLISLGIRAFIVEPRYIPSLSMYPTFLVGDQLAVEKVTKTYKNYERGDVVVFNPTQGYQEYVSRDPYITDKSRINEALIKRIIAKGGDVVEVKDGQLFVNGVAQEEKYIAEGPAYVWGPRRVPDGMYMVLGDNRNHSLDSHIWGFLPKENIIGRAICKYWPPWRLG
Sbjct:    1 MAFRYAACFLLTIAFIIILSPVFAFKSSLCTRGLSSYVAVGRLCPKSSITSLSNGNGRRPPFPPSRTIFPPLFASDSGNSGEGKEEEEGGAEEGSLLDKAKSFFSDPENRKDTTLFVTSFLISLGIRAFIVEPRYIPSLSMYPTFLVGDQLAVEKVTKTYKNYERGDVVVFNPTQGYQEYVSRDPYITDKSRINEALIKRIIAKGGDVVEVKDGQLFVNGVAQEEKYIAEGPAYVWGPRRVPDGMYMVLGDNRNHSLDSHIWGFLPKENIIGRAICKYWPPWRLG 285          
BLAST of EWM25296.1 vs. NCBI_GenBank
Match: gi|1072237856|gb|OEU22583.1| (LexA/Signal peptidase [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 214.157 bits (544), Expect = 2.311e-64
Identity = 104/194 (53.61%), Postives = 136/194 (70.10%), Query Frame = 0
Query:   95 SLLDKAKSFFSDPENRKDTTLFVTSFLISLGIRAFIVEPRYIPSLSMYPTFLVGDQLAVEKVTKTYKNYERGDVVVFNPTQGYQEYVSRDPYITDKSRINEALIKRIIAKGGDVVEVKDGQLFVNGVAQEEKYIAEGPAYVWGPRRVPDGMYMVLGDNRNHSLDSHIWGFLPKENIIGRAICKYWPPWRLGHCG 288
            S++++ + +    E + D   +  S  I+L +R  I+EPRYIPSLSM+PTF VGDQLAVEKVTK    + R +VVVFNP + +++ +  D Y    +R  EALIKRI+A  GD VEVK G+LFVNG  Q+E + AE   Y +GP +VP    +VLGDNRNHSLD HIWGFLPK+N+IGRA+  YWPPWR+G+ G
Sbjct:   91 SIIEQFQRWLKSAEGQDDVKTYFVSLFIALALRFTIIEPRYIPSLSMFPTFDVGDQLAVEKVTKRISPFYRQEVVVFNPPESFRDIIVGD-YGQSTARAKEALIKRIVAIEGDEVEVKGGKLFVNGDEQDEPFTAEDAKYEFGPVKVPPENVLVLGDNRNHSLDGHIWGFLPKKNVIGRAVFIYWPPWRVGNTG 283          
BLAST of EWM25296.1 vs. NCBI_GenBank
Match: gi|219111539|ref|XP_002177521.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217412056|gb|EEC51984.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 208.764 bits (530), Expect = 1.201e-63
Identity = 101/178 (56.74%), Postives = 127/178 (71.35%), Query Frame = 0
Query:  111 KDTTLFVTSFLISLGIRAFIVEPRYIPSLSMYPTFLVGDQLAVEKVTKTYKNYERGDVVVFNPTQGYQEYVSRDPYITDKSRINEALIKRIIAKGGDVVEVKDGQLFVNGVAQEEKYIAEGPAYVWGPRRVPDGMYMVLGDNRNHSLDSHIWGFLPKENIIGRAICKYWPPWRLGHCG 288
            +D   +  S  ++L +R  I+EPR+IPSLSMYPTF VGDQLAVEKVTK  K + R +VVVF P Q +++ V       DKS+  EALIKRI+A  GD VE+K+G+L +N + QEE Y AE   Y +GP RVP    +VLGDNRNHSLD HIWGFLP +N+IGRA+  YWPPWR+G+ G
Sbjct:    1 EDVKTYFISLFLALLLRFTIIEPRFIPSLSMYPTFEVGDQLAVEKVTKRIKPFYRTEVVVFQPPQAFRDIVENQ--YGDKSKGKEALIKRIVAVEGDKVEIKNGKLLINDIEQEEAYTAEDAQYAFGPVRVPPENVLVLGDNRNHSLDGHIWGFLPTKNVIGRAVFVYWPPWRVGNGG 176          
BLAST of EWM25296.1 vs. NCBI_GenBank
Match: gi|299117135|emb|CBN75099.1| (Signal peptidase I (SPase I) (Leader peptidase I) [Ectocarpus siliculosus])

HSP 1 Score: 212.231 bits (539), Expect = 1.454e-63
Identity = 102/179 (56.98%), Postives = 129/179 (72.07%), Query Frame = 0
Query:  108 ENRKDTTLFVTSFLISLGIRAFIVEPRYIPSLSMYPTFLVGDQLAVEKVT-KTYKNYERGDVVVFNPTQGYQEYVSRDPYITDKSRINEALIKRIIAKGGDVVEVKDGQLFVNGVAQEEKYIAEGPAYVWGPRRVPDGMYMVLGDNRNHSLDSHIWGFLPKENIIGRAICKYWPPWRLG 285
            + + D  ++ TS  ++L +R+  +EPR+IPSLSM+PTF +GDQLAV+K++ K  + Y+R DVVVF P   ++E+  R           +ALIKR+IA GGD V++KDG LFVNG  Q E Y  E P Y WGP+ VP+GM MVLGDNRNHSLDSHIWGFLP EN+IGRAI KYWPPWR G
Sbjct:  110 DGKSDLKIYGTSLALALVVRSVALEPRFIPSLSMFPTFEIGDQLAVDKLSSKLSRPYQRKDVVVFYPPPKFREFSDRGK--------KDALIKRVIAVGGDAVQIKDGSLFVNGQEQFEDYTFEEPEYSWGPQTVPEGMVMVLGDNRNHSLDSHIWGFLPTENVIGRAIFKYWPPWRAG 280          
BLAST of EWM25296.1 vs. NCBI_GenBank
Match: gi|873240635|emb|CEL93256.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 209.92 bits (533), Expect = 6.230e-62
Identity = 103/187 (55.08%), Postives = 132/187 (70.59%), Query Frame = 0
Query:  110 RKDT-----TLFVTSFLISLGIRAFIVEPRYIPSLSMYPTFLVGDQLAVEKVTKTYKNYERGDVVVFNPTQ------GYQEYVSRDPYITDKSRINEALIKRIIAKGGDVVEVKDGQLFVNGVAQEEKYIAEGPAYVWGPRRVPDGMYMVLGDNRNHSLDSHIWGFLPKENIIGRAICKYWPPWRLG 285
            R+DT      +F+ +F ISL IR F+ EPR+IPSLSMYPT  VGD + VEKV+K ++   RGDV+VF P Q      G ++  S    + +  + + A IKR +A GGD VEVK+G+LFVNG  QEEK+I E P Y++GP +VPD M M+LGDNRN SLDSH+WGFLP +N+IGRA+ KYWPPWR G
Sbjct:  160 RRDTADEVRNVFI-AFFISLMIRIFVAEPRFIPSLSMYPTLDVGDNVVVEKVSKYWREPHRGDVLVFVPPQEALSLSGSKDDSSAFARLLNGGKSDRAFIKRCVAVGGDTVEVKNGRLFVNGDLQEEKFINEAPRYMFGPFKVPDSMVMMLGDNRNQSLDSHVWGFLPADNVIGRAVFKYWPPWRAG 345          
BLAST of EWM25296.1 vs. NCBI_GenBank
Match: gi|223999351|ref|XP_002289348.1| (thylakoidal processing peptidase, partial [Thalassiosira pseudonana CCMP1335] >gi|220974556|gb|EED92885.1| thylakoidal processing peptidase, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 203.756 bits (517), Expect = 1.233e-61
Identity = 106/188 (56.38%), Postives = 129/188 (68.62%), Query Frame = 0
Query:  102 SFFSDPENRKDTTLFVTSFLISLGIRAFIVEPRYIPSLSMYPTFLVGDQLAVEKVTKTYKNYERGDVVVFNPTQGYQEYVSRDPYITDKSR-INEALIKRIIAKGGDVVEVKDGQLFVNGVAQEEKYIAEGPAYVWGPRRVPDGMYMVLGDNRNHSLDSHIWGFLPKENIIGRAICKYWPPWRLGHCG 288
             +F+  E ++D   +  S  ++L +R  I+EPRYIPSLSM+PTF VGDQLAVEKVTK  + + R +VVVF+P   ++E V       D SR   EALIKRI+A  GD VEV  G+LFVNGV QEE + AE   Y +GP  VP G  +VLGDNRNHSLD HIWGFLP EN+IGRA+  YWPPWR G  G
Sbjct:    1 EWFASDEGKEDVKTYTVSLGVALLLRLLIIEPRYIPSLSMFPTFEVGDQLAVEKVTKRIRPFSRNEVVVFHPPMKFREIVG------DTSRKAKEALIKRIVATEGDKVEVMGGKLFVNGVEQEEPFTAEDAEYDFGPVVVPPGNVLVLGDNRNHSLDGHIWGFLPTENVIGRAVFVYWPPWRCGSTG 182          
BLAST of EWM25296.1 vs. NCBI_GenBank
Match: gi|544209639|ref|XP_005535222.1| (similar to signal peptidase [Cyanidioschyzon merolae strain 10D] >gi|449015534|dbj|BAM78936.1| similar to signal peptidase [Cyanidioschyzon merolae strain 10D])

HSP 1 Score: 207.223 bits (526), Expect = 5.683e-61
Identity = 106/198 (53.54%), Postives = 133/198 (67.17%), Query Frame = 0
Query:  112 DTTLFVTSFLISLGIRAFIVEPRYIPSLSMYPTFLVGDQLAVEKVT-KTYKNYERGDVVVFNP-------------------TQGYQEYVSRDPYITDKSRINEALIKRIIAKGGDVVEVKDGQLFVNGVAQEEKYIAEGPAYVWGPRRVPDGMYMVLGDNRNHSLDSHIWGFLPKENIIGRAICKYWPPWRLGHCGH 289
            D  +F  SFL ++ IRAF+VEPRYIPSLSMYPTF VGDQL V+KVT K  ++ +RGDVVVF P                     G  +Y +RD           A+IKR++A GGDVVE++DG+L+VNG AQ E YIAE P Y WGP +VPDG  +VLGDNR++SLDSH+WGFLP+ N+IGRA+ +YWP  R+G   H
Sbjct:  150 DVRVFTASFLAAVFIRAFVVEPRYIPSLSMYPTFDVGDQLLVDKVTLKLGRHIQRGDVVVFYPPPALIEASKETAKALNAAGETGAHQYGARD-----------AMIKRVVALGGDVVEIRDGRLYVNGEAQIETYIAESPDYQWGPVQVPDGYLVVLGDNRSNSLDSHVWGFLPERNVIGRAVFRYWPLTRVGTIEH 336          
BLAST of EWM25296.1 vs. NCBI_GenBank
Match: gi|397582919|gb|EJK52462.1| (hypothetical protein THAOC_28255 [Thalassiosira oceanica])

HSP 1 Score: 204.527 bits (519), Expect = 1.528e-60
Identity = 110/197 (55.84%), Postives = 134/197 (68.02%), Query Frame = 0
Query:   93 EGSLLDKAKSFFSDPENRKDTTLFVTSFLISLGIRAFIVEPRYIPSLSMYPTFLVGDQLAVEKVTKTYKNYERGDVVVFNPTQGYQEYVSRDPYITDKSR-INEALIKRIIAKGGDVVEVKDGQLFVNGVAQEEKYIAEGPAYVWGPRRVPDGMYMVLGDNRNHSLDSHIWGFLPKENIIGRAICKYWPPWRLGHCG 288
            E S  ++ + +F+  E ++D   + TS  I+L +R  I+EPRYIPSLSMYPTF VGDQLAVEKVTK  +   R +VVVFNP   ++E V       D SR   EALIKRI+A  GD VEV  G+LFVNG  Q+E + AE   Y +GP  VP G  +VLGDNRNHSLD HIWGFLP EN+IGRA+  YWPPWR+G  G
Sbjct:   94 ELSFFEQVQEWFASEEGKEDVRTYTTSLGIALLLRLLIIEPRYIPSLSMYPTFEVGDQLAVEKVTKRIRPLNRNEVVVFNPPTSFKEIVG------DTSRKAKEALIKRIVATEGDKVEVMGGKLFVNGKEQDEPFTAEDAQYEFGPVLVPAGEVLVLGDNRNHSLDGHIWGFLPAENVIGRAVFVYWPPWRVGTTG 284          
BLAST of EWM25296.1 vs. NCBI_GenBank
Match: gi|546306362|ref|XP_005712939.1| (unnamed protein product [Chondrus crispus] >gi|507109312|emb|CDF33136.1| unnamed protein product [Chondrus crispus])

HSP 1 Score: 199.134 bits (505), Expect = 7.434e-59
Identity = 96/188 (51.06%), Postives = 129/188 (68.62%), Query Frame = 0
Query:  101 KSFFS---DPENRKDTTLFVTSFLISLGIRAFIVEPRYIPSLSMYPTFLVGDQLAVEKVTKTYKNYERGDVVVFNPTQGYQEYVSRDPYITDKSRINEALIKRIIAKGGDVVEVKDGQLFVNGVAQEEKYIAEGPAYVWGPRRVPDGMYMVLGDNRNHSLDSHIWGFLPKENIIGRAICKYWPPWRLG 285
            +S+FS   + +   D   F  +F ++L +R F+VEPRYIPSLSM+PTF +GDQ  V+KV+K  ++ E GDVVVF P Q  +E            R  +A IKRI+A+GGD+V +  G+++VN + +EE +I E P Y WGP  VP G  MVLGDNRN+S DSHIWGFLP+ENIIG+A+ +YWPP R+G
Sbjct:   76 RSWFSRVLNDDQFDDLRTFTMAFAVALLVRGFVVEPRYIPSLSMFPTFDIGDQFLVDKVSKYVRSAETGDVVVFEPPQALKER---------GYRKKDAFIKRIVARGGDIVRITGGEVYVNDLRREEPFIKEHPNYEWGPGEVPAGFVMVLGDNRNNSYDSHIWGFLPEENIIGKAMVRYWPPARVG 254          
The following BLAST results are available for this feature:
BLAST of EWM25296.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107046|gb|EWM25296.1|0.000e+0100.00signal peptidase i [Nannochloropsis gaditana][more]
gi|553189674|ref|XP_005855049.1|0.000e+0100.00signal peptidase I [Nannochloropsis gaditana CCMP5... [more]
gi|1072237856|gb|OEU22583.1|2.311e-6453.61LexA/Signal peptidase [Fragilariopsis cylindrus CC... [more]
gi|219111539|ref|XP_002177521.1|1.201e-6356.74predicted protein, partial [Phaeodactylum tricornu... [more]
gi|299117135|emb|CBN75099.1|1.454e-6356.98Signal peptidase I (SPase I) (Leader peptidase I) ... [more]
gi|873240635|emb|CEL93256.1|6.230e-6255.08unnamed protein product [Vitrella brassicaformis C... [more]
gi|223999351|ref|XP_002289348.1|1.233e-6156.38thylakoidal processing peptidase, partial [Thalass... [more]
gi|544209639|ref|XP_005535222.1|5.683e-6153.54similar to signal peptidase [Cyanidioschyzon merol... [more]
gi|397582919|gb|EJK52462.1|1.528e-6055.84hypothetical protein THAOC_28255 [Thalassiosira oc... [more]
gi|546306362|ref|XP_005712939.1|7.434e-5951.06unnamed protein product [Chondrus crispus] >gi|507... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5392rna5392Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications