EWM25296.1, cds5379 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25296.1 vs. NCBI_GenBank
Match: gi|585107046|gb|EWM25296.1| (signal peptidase i [Nannochloropsis gaditana]) HSP 1 Score: 682.945 bits (1761), Expect = 0.000e+0 Identity = 328/328 (100.00%), Postives = 328/328 (100.00%), Query Frame = 0
Query: 1 MAFRYAACFLLTIAFIIILSPVFAFKSSLCTRGLSSYVAVGRLCPKSSITSLSNGNGRRPPFPPSRTIFPPLFASDSGNSGEGKEEEEGGAEEGSLLDKAKSFFSDPENRKDTTLFVTSFLISLGIRAFIVEPRYIPSLSMYPTFLVGDQLAVEKVTKTYKNYERGDVVVFNPTQGYQEYVSRDPYITDKSRINEALIKRIIAKGGDVVEVKDGQLFVNGVAQEEKYIAEGPAYVWGPRRVPDGMYMVLGDNRNHSLDSHIWGFLPKENIIGRAICKYWPPWRLGHCGHTHTKKAILMRMDDWKQAQQRTRDEIATRTVGVPKACLHA 328
MAFRYAACFLLTIAFIIILSPVFAFKSSLCTRGLSSYVAVGRLCPKSSITSLSNGNGRRPPFPPSRTIFPPLFASDSGNSGEGKEEEEGGAEEGSLLDKAKSFFSDPENRKDTTLFVTSFLISLGIRAFIVEPRYIPSLSMYPTFLVGDQLAVEKVTKTYKNYERGDVVVFNPTQGYQEYVSRDPYITDKSRINEALIKRIIAKGGDVVEVKDGQLFVNGVAQEEKYIAEGPAYVWGPRRVPDGMYMVLGDNRNHSLDSHIWGFLPKENIIGRAICKYWPPWRLGHCGHTHTKKAILMRMDDWKQAQQRTRDEIATRTVGVPKACLHA
Sbjct: 1 MAFRYAACFLLTIAFIIILSPVFAFKSSLCTRGLSSYVAVGRLCPKSSITSLSNGNGRRPPFPPSRTIFPPLFASDSGNSGEGKEEEEGGAEEGSLLDKAKSFFSDPENRKDTTLFVTSFLISLGIRAFIVEPRYIPSLSMYPTFLVGDQLAVEKVTKTYKNYERGDVVVFNPTQGYQEYVSRDPYITDKSRINEALIKRIIAKGGDVVEVKDGQLFVNGVAQEEKYIAEGPAYVWGPRRVPDGMYMVLGDNRNHSLDSHIWGFLPKENIIGRAICKYWPPWRLGHCGHTHTKKAILMRMDDWKQAQQRTRDEIATRTVGVPKACLHA 328
BLAST of EWM25296.1 vs. NCBI_GenBank
Match: gi|553189674|ref|XP_005855049.1| (signal peptidase I [Nannochloropsis gaditana CCMP526] >gi|422294010|gb|EKU21310.1| signal peptidase I [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 587.8 bits (1514), Expect = 0.000e+0 Identity = 285/285 (100.00%), Postives = 285/285 (100.00%), Query Frame = 0
Query: 1 MAFRYAACFLLTIAFIIILSPVFAFKSSLCTRGLSSYVAVGRLCPKSSITSLSNGNGRRPPFPPSRTIFPPLFASDSGNSGEGKEEEEGGAEEGSLLDKAKSFFSDPENRKDTTLFVTSFLISLGIRAFIVEPRYIPSLSMYPTFLVGDQLAVEKVTKTYKNYERGDVVVFNPTQGYQEYVSRDPYITDKSRINEALIKRIIAKGGDVVEVKDGQLFVNGVAQEEKYIAEGPAYVWGPRRVPDGMYMVLGDNRNHSLDSHIWGFLPKENIIGRAICKYWPPWRLG 285
MAFRYAACFLLTIAFIIILSPVFAFKSSLCTRGLSSYVAVGRLCPKSSITSLSNGNGRRPPFPPSRTIFPPLFASDSGNSGEGKEEEEGGAEEGSLLDKAKSFFSDPENRKDTTLFVTSFLISLGIRAFIVEPRYIPSLSMYPTFLVGDQLAVEKVTKTYKNYERGDVVVFNPTQGYQEYVSRDPYITDKSRINEALIKRIIAKGGDVVEVKDGQLFVNGVAQEEKYIAEGPAYVWGPRRVPDGMYMVLGDNRNHSLDSHIWGFLPKENIIGRAICKYWPPWRLG
Sbjct: 1 MAFRYAACFLLTIAFIIILSPVFAFKSSLCTRGLSSYVAVGRLCPKSSITSLSNGNGRRPPFPPSRTIFPPLFASDSGNSGEGKEEEEGGAEEGSLLDKAKSFFSDPENRKDTTLFVTSFLISLGIRAFIVEPRYIPSLSMYPTFLVGDQLAVEKVTKTYKNYERGDVVVFNPTQGYQEYVSRDPYITDKSRINEALIKRIIAKGGDVVEVKDGQLFVNGVAQEEKYIAEGPAYVWGPRRVPDGMYMVLGDNRNHSLDSHIWGFLPKENIIGRAICKYWPPWRLG 285
BLAST of EWM25296.1 vs. NCBI_GenBank
Match: gi|1072237856|gb|OEU22583.1| (LexA/Signal peptidase [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 214.157 bits (544), Expect = 2.311e-64 Identity = 104/194 (53.61%), Postives = 136/194 (70.10%), Query Frame = 0
Query: 95 SLLDKAKSFFSDPENRKDTTLFVTSFLISLGIRAFIVEPRYIPSLSMYPTFLVGDQLAVEKVTKTYKNYERGDVVVFNPTQGYQEYVSRDPYITDKSRINEALIKRIIAKGGDVVEVKDGQLFVNGVAQEEKYIAEGPAYVWGPRRVPDGMYMVLGDNRNHSLDSHIWGFLPKENIIGRAICKYWPPWRLGHCG 288
S++++ + + E + D + S I+L +R I+EPRYIPSLSM+PTF VGDQLAVEKVTK + R +VVVFNP + +++ + D Y +R EALIKRI+A GD VEVK G+LFVNG Q+E + AE Y +GP +VP +VLGDNRNHSLD HIWGFLPK+N+IGRA+ YWPPWR+G+ G
Sbjct: 91 SIIEQFQRWLKSAEGQDDVKTYFVSLFIALALRFTIIEPRYIPSLSMFPTFDVGDQLAVEKVTKRISPFYRQEVVVFNPPESFRDIIVGD-YGQSTARAKEALIKRIVAIEGDEVEVKGGKLFVNGDEQDEPFTAEDAKYEFGPVKVPPENVLVLGDNRNHSLDGHIWGFLPKKNVIGRAVFIYWPPWRVGNTG 283
BLAST of EWM25296.1 vs. NCBI_GenBank
Match: gi|219111539|ref|XP_002177521.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217412056|gb|EEC51984.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 208.764 bits (530), Expect = 1.201e-63 Identity = 101/178 (56.74%), Postives = 127/178 (71.35%), Query Frame = 0
Query: 111 KDTTLFVTSFLISLGIRAFIVEPRYIPSLSMYPTFLVGDQLAVEKVTKTYKNYERGDVVVFNPTQGYQEYVSRDPYITDKSRINEALIKRIIAKGGDVVEVKDGQLFVNGVAQEEKYIAEGPAYVWGPRRVPDGMYMVLGDNRNHSLDSHIWGFLPKENIIGRAICKYWPPWRLGHCG 288
+D + S ++L +R I+EPR+IPSLSMYPTF VGDQLAVEKVTK K + R +VVVF P Q +++ V DKS+ EALIKRI+A GD VE+K+G+L +N + QEE Y AE Y +GP RVP +VLGDNRNHSLD HIWGFLP +N+IGRA+ YWPPWR+G+ G
Sbjct: 1 EDVKTYFISLFLALLLRFTIIEPRFIPSLSMYPTFEVGDQLAVEKVTKRIKPFYRTEVVVFQPPQAFRDIVENQ--YGDKSKGKEALIKRIVAVEGDKVEIKNGKLLINDIEQEEAYTAEDAQYAFGPVRVPPENVLVLGDNRNHSLDGHIWGFLPTKNVIGRAVFVYWPPWRVGNGG 176
BLAST of EWM25296.1 vs. NCBI_GenBank
Match: gi|299117135|emb|CBN75099.1| (Signal peptidase I (SPase I) (Leader peptidase I) [Ectocarpus siliculosus]) HSP 1 Score: 212.231 bits (539), Expect = 1.454e-63 Identity = 102/179 (56.98%), Postives = 129/179 (72.07%), Query Frame = 0
Query: 108 ENRKDTTLFVTSFLISLGIRAFIVEPRYIPSLSMYPTFLVGDQLAVEKVT-KTYKNYERGDVVVFNPTQGYQEYVSRDPYITDKSRINEALIKRIIAKGGDVVEVKDGQLFVNGVAQEEKYIAEGPAYVWGPRRVPDGMYMVLGDNRNHSLDSHIWGFLPKENIIGRAICKYWPPWRLG 285
+ + D ++ TS ++L +R+ +EPR+IPSLSM+PTF +GDQLAV+K++ K + Y+R DVVVF P ++E+ R +ALIKR+IA GGD V++KDG LFVNG Q E Y E P Y WGP+ VP+GM MVLGDNRNHSLDSHIWGFLP EN+IGRAI KYWPPWR G
Sbjct: 110 DGKSDLKIYGTSLALALVVRSVALEPRFIPSLSMFPTFEIGDQLAVDKLSSKLSRPYQRKDVVVFYPPPKFREFSDRGK--------KDALIKRVIAVGGDAVQIKDGSLFVNGQEQFEDYTFEEPEYSWGPQTVPEGMVMVLGDNRNHSLDSHIWGFLPTENVIGRAIFKYWPPWRAG 280
BLAST of EWM25296.1 vs. NCBI_GenBank
Match: gi|873240635|emb|CEL93256.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 209.92 bits (533), Expect = 6.230e-62 Identity = 103/187 (55.08%), Postives = 132/187 (70.59%), Query Frame = 0
Query: 110 RKDT-----TLFVTSFLISLGIRAFIVEPRYIPSLSMYPTFLVGDQLAVEKVTKTYKNYERGDVVVFNPTQ------GYQEYVSRDPYITDKSRINEALIKRIIAKGGDVVEVKDGQLFVNGVAQEEKYIAEGPAYVWGPRRVPDGMYMVLGDNRNHSLDSHIWGFLPKENIIGRAICKYWPPWRLG 285
R+DT +F+ +F ISL IR F+ EPR+IPSLSMYPT VGD + VEKV+K ++ RGDV+VF P Q G ++ S + + + + A IKR +A GGD VEVK+G+LFVNG QEEK+I E P Y++GP +VPD M M+LGDNRN SLDSH+WGFLP +N+IGRA+ KYWPPWR G
Sbjct: 160 RRDTADEVRNVFI-AFFISLMIRIFVAEPRFIPSLSMYPTLDVGDNVVVEKVSKYWREPHRGDVLVFVPPQEALSLSGSKDDSSAFARLLNGGKSDRAFIKRCVAVGGDTVEVKNGRLFVNGDLQEEKFINEAPRYMFGPFKVPDSMVMMLGDNRNQSLDSHVWGFLPADNVIGRAVFKYWPPWRAG 345
BLAST of EWM25296.1 vs. NCBI_GenBank
Match: gi|223999351|ref|XP_002289348.1| (thylakoidal processing peptidase, partial [Thalassiosira pseudonana CCMP1335] >gi|220974556|gb|EED92885.1| thylakoidal processing peptidase, partial [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 203.756 bits (517), Expect = 1.233e-61 Identity = 106/188 (56.38%), Postives = 129/188 (68.62%), Query Frame = 0
Query: 102 SFFSDPENRKDTTLFVTSFLISLGIRAFIVEPRYIPSLSMYPTFLVGDQLAVEKVTKTYKNYERGDVVVFNPTQGYQEYVSRDPYITDKSR-INEALIKRIIAKGGDVVEVKDGQLFVNGVAQEEKYIAEGPAYVWGPRRVPDGMYMVLGDNRNHSLDSHIWGFLPKENIIGRAICKYWPPWRLGHCG 288
+F+ E ++D + S ++L +R I+EPRYIPSLSM+PTF VGDQLAVEKVTK + + R +VVVF+P ++E V D SR EALIKRI+A GD VEV G+LFVNGV QEE + AE Y +GP VP G +VLGDNRNHSLD HIWGFLP EN+IGRA+ YWPPWR G G
Sbjct: 1 EWFASDEGKEDVKTYTVSLGVALLLRLLIIEPRYIPSLSMFPTFEVGDQLAVEKVTKRIRPFSRNEVVVFHPPMKFREIVG------DTSRKAKEALIKRIVATEGDKVEVMGGKLFVNGVEQEEPFTAEDAEYDFGPVVVPPGNVLVLGDNRNHSLDGHIWGFLPTENVIGRAVFVYWPPWRCGSTG 182
BLAST of EWM25296.1 vs. NCBI_GenBank
Match: gi|544209639|ref|XP_005535222.1| (similar to signal peptidase [Cyanidioschyzon merolae strain 10D] >gi|449015534|dbj|BAM78936.1| similar to signal peptidase [Cyanidioschyzon merolae strain 10D]) HSP 1 Score: 207.223 bits (526), Expect = 5.683e-61 Identity = 106/198 (53.54%), Postives = 133/198 (67.17%), Query Frame = 0
Query: 112 DTTLFVTSFLISLGIRAFIVEPRYIPSLSMYPTFLVGDQLAVEKVT-KTYKNYERGDVVVFNP-------------------TQGYQEYVSRDPYITDKSRINEALIKRIIAKGGDVVEVKDGQLFVNGVAQEEKYIAEGPAYVWGPRRVPDGMYMVLGDNRNHSLDSHIWGFLPKENIIGRAICKYWPPWRLGHCGH 289
D +F SFL ++ IRAF+VEPRYIPSLSMYPTF VGDQL V+KVT K ++ +RGDVVVF P G +Y +RD A+IKR++A GGDVVE++DG+L+VNG AQ E YIAE P Y WGP +VPDG +VLGDNR++SLDSH+WGFLP+ N+IGRA+ +YWP R+G H
Sbjct: 150 DVRVFTASFLAAVFIRAFVVEPRYIPSLSMYPTFDVGDQLLVDKVTLKLGRHIQRGDVVVFYPPPALIEASKETAKALNAAGETGAHQYGARD-----------AMIKRVVALGGDVVEIRDGRLYVNGEAQIETYIAESPDYQWGPVQVPDGYLVVLGDNRSNSLDSHVWGFLPERNVIGRAVFRYWPLTRVGTIEH 336
BLAST of EWM25296.1 vs. NCBI_GenBank
Match: gi|397582919|gb|EJK52462.1| (hypothetical protein THAOC_28255 [Thalassiosira oceanica]) HSP 1 Score: 204.527 bits (519), Expect = 1.528e-60 Identity = 110/197 (55.84%), Postives = 134/197 (68.02%), Query Frame = 0
Query: 93 EGSLLDKAKSFFSDPENRKDTTLFVTSFLISLGIRAFIVEPRYIPSLSMYPTFLVGDQLAVEKVTKTYKNYERGDVVVFNPTQGYQEYVSRDPYITDKSR-INEALIKRIIAKGGDVVEVKDGQLFVNGVAQEEKYIAEGPAYVWGPRRVPDGMYMVLGDNRNHSLDSHIWGFLPKENIIGRAICKYWPPWRLGHCG 288
E S ++ + +F+ E ++D + TS I+L +R I+EPRYIPSLSMYPTF VGDQLAVEKVTK + R +VVVFNP ++E V D SR EALIKRI+A GD VEV G+LFVNG Q+E + AE Y +GP VP G +VLGDNRNHSLD HIWGFLP EN+IGRA+ YWPPWR+G G
Sbjct: 94 ELSFFEQVQEWFASEEGKEDVRTYTTSLGIALLLRLLIIEPRYIPSLSMYPTFEVGDQLAVEKVTKRIRPLNRNEVVVFNPPTSFKEIVG------DTSRKAKEALIKRIVATEGDKVEVMGGKLFVNGKEQDEPFTAEDAQYEFGPVLVPAGEVLVLGDNRNHSLDGHIWGFLPAENVIGRAVFVYWPPWRVGTTG 284
BLAST of EWM25296.1 vs. NCBI_GenBank
Match: gi|546306362|ref|XP_005712939.1| (unnamed protein product [Chondrus crispus] >gi|507109312|emb|CDF33136.1| unnamed protein product [Chondrus crispus]) HSP 1 Score: 199.134 bits (505), Expect = 7.434e-59 Identity = 96/188 (51.06%), Postives = 129/188 (68.62%), Query Frame = 0
Query: 101 KSFFS---DPENRKDTTLFVTSFLISLGIRAFIVEPRYIPSLSMYPTFLVGDQLAVEKVTKTYKNYERGDVVVFNPTQGYQEYVSRDPYITDKSRINEALIKRIIAKGGDVVEVKDGQLFVNGVAQEEKYIAEGPAYVWGPRRVPDGMYMVLGDNRNHSLDSHIWGFLPKENIIGRAICKYWPPWRLG 285
+S+FS + + D F +F ++L +R F+VEPRYIPSLSM+PTF +GDQ V+KV+K ++ E GDVVVF P Q +E R +A IKRI+A+GGD+V + G+++VN + +EE +I E P Y WGP VP G MVLGDNRN+S DSHIWGFLP+ENIIG+A+ +YWPP R+G
Sbjct: 76 RSWFSRVLNDDQFDDLRTFTMAFAVALLVRGFVVEPRYIPSLSMFPTFDIGDQFLVDKVSKYVRSAETGDVVVFEPPQALKER---------GYRKKDAFIKRIVARGGDIVRITGGEVYVNDLRREEPFIKEHPNYEWGPGEVPAGFVMVLGDNRNNSYDSHIWGFLPEENIIGKAMVRYWPPARVG 254 The following BLAST results are available for this feature:
BLAST of EWM25296.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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