rna539, rna539 (mRNA) Nannochloropsis gaditana

Overview
Namerna539
Unique Namerna539
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length355
Alignment locationCM002455.1:1345882..1347354 -

Link to JBrowse

Properties
Property NameValue
Productdna replication licensing factor mcm3
Orig transcript idgnl|cribi|Naga_100332g1.10248.mrna
Orig protein idgnl|cribi|Naga_100332g1.10248
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1345882..1347354 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100332g1gene520Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna539rna539-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30133.1cds539Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna539 ID=rna539|Name=rna539|organism=Nannochloropsis gaditana|type=mRNA|length=355bp
TCCCGCCTTCCCCTCTCGCCAGGACAAAGTCAAGCCCGGTGACCGGGTCC
AGTGCATGGGAATCTACAAGGCCCTCGCGGGGCAGCACCAGGGATCCACC
TCGGGCATTTTTCAGACCGTGGTCCTGGTCAACAACGTCCGGCTCATTGG
GAAAGACTCGGGCTCGCTGAAAATGAATGCCGACGACATAGGCCACATCC
GCTCGCTCGCCAAAGACCAGCCTCGTGTGCTCGACGTCCTTGGCCGTTCT
CTGGCACCATCCATATTCGGGCACGATTTTATCAAAAAAGCGTTGATCCT
CCAGGCAGTCAGCGGCGTGGAAAAGAGTCTGGTGAGACCTCGTTGTCCAT
TCCCT
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protein sequence of rna539

>rna539-protein ID=rna539-protein|Name=rna539|organism=Nannochloropsis gaditana|type=polypeptide|length=156bp
MNDVLNQDHQPEELRRVRVDMGTLDRHKQQFVEFLEAEDGPANYKDSIAH
TLSKKGRRVVVNLNDLREFDVELARRVITSPLEYLLALETAVKEVAQRLD
PSFGKLLSQHDQLKVGFDGAFGRNHVSPRGLTSRVGGREGERDDVSQRDV
CALHRC
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mRNA from alignment at CM002455.1:1345882..1347354-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna539 ID=rna539|Name=rna539|organism=Nannochloropsis gaditana|type=mRNA|length=1473bp|location=Sequence derived from alignment at CM002455.1:1345882..1347354- (Nannochloropsis gaditana)
CCTGACCGCCATCGTTTCTCATCGCTTATTTCCCCCGCTCCTTGACGTGC
CTATACCTCCATCATACTATCCCAGGGGTGAAGTGCTTGGTGGCTTGTAA
ATTACTGCATATTTGCGTATCTCTGTCATAGCAACAAGATGAACGATGTT
CTAAATCAAGACCATCAGCCGGAGGAGCTCCGGCGCGTGCGCGTAGACAT
GGGAACACTAGACAGGGTAAGTGACATGCGGAAAAATGGAGCAACCACTC
CTCCAGGTCTGCGCAGCCTTACCCTTTTCTTCGTTCTATGTCTCCTTTAG
CACAAACAACAATTCGTAGAATTCCTTGAAGCGGAAGATGGTCCGGCTAA
TTACAAGGATAGCATCGCGCACACCCTAAGTAAGTAGACGGTTATTCCCC
CCATTCCTTTTCTCCGAAACCACCAGATGAAGTGAAACGCCTGATTGCCC
CCTTGAGTGCACGTGCACGCACACTCTTCTCACCGTCCCTGCCACGAACA
CAAATATATCAGGCAAGAAGGGCAGGCGCGTCGTGGTCAATCTGAACGAT
TTGCGGGAATTCGACGTGGAATTGGCACGGTACGTGTGATCTCTCCCCTT
TCCACTCTCTTCGTACCCCCCAAAGGTGACTATGGGAGTCTCACGCCCTT
CCTTTCCCTTTCGACAGCCGCGTGATTACGTCACCGCTAGAATACCTGCT
CGCTTTAGAGACCGCTGTAAAAGGTACGTTAAAAAGCCAATCCCTGTTCC
TCTCCCTTTCGTCCCTCCCCGGCTCTCCCCTTCCTTCTCAACCGCTCTCC
TTCACGCTCCTGTTCCCTGACACCTTTGAACCCCAATAGAGGTAGCGCAG
CGCCTGGACCCAAGTTTTGGGAAATTGCTTTCGCAGCACGACCAGTTAAA
AGTGGGCTTCGATGGTGCCTTTGGGAGGAACCATGTGTCTCCGCGCGGGC
TCACCTCCAGGGTAGGAGGGAGAGAGGGAGAGAGGGACGATGTGTCGCAG
AGGGATGTATGTGCATTGCACAGGTGCTAGTCACAAACATCCTGTCAATG
ATTTCCTCGCCACCTGACCGTCTACCTCCTCCCCTCCCCCCCCGGCCGGC
CTCCTTCCCTCCCTCCCTCCCCCAGCGCCTGGCTCAACTCGTGTGCGTGG
AAGGCATCGTCACCAAATGCTCCCTAGTCCGCCCCAAGGTCGTCCGCTCA
GTACACTACTGCCCCGCCAAGCAAGAGCACCTGGTCCGAGACTACAGGGA
CGCCACCTCCATCTCCATCGGCCTGGAAGCGGGGGGCCGGCCCATGTTGC
CGACGAACAACACGTACCCCAACAAGGACAAGGACGGGCACCCCTTGGAG
ACAGAGTTTGGGCTTTCCACCTACAAGGACCATCAGAGCGTGACCATCCA
GGAGATGCCGGAGCGGGCCCCCCTGGGCGAGATGCCTCGGAGCATCTCCT
TGGTCCTGGAGCATGACTTGGTG
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Coding sequence (CDS) from alignment at CM002455.1:1345882..1347354-

>rna539 ID=rna539|Name=rna539|organism=Nannochloropsis gaditana|type=CDS|length=2355bp|location=Sequence derived from alignment at CM002455.1:1345882..1347354- (Nannochloropsis gaditana)
AGGTAGCGCAGCGCCTGGACCCAAGTTTTGGGAAATTGCTTTCGCAGCAC
GACCAGTTAAAAGTGGGCTTCGATGGTGCCTTTGGGAGGAACCATGTGTC
TCCGCGCGGGCTCACCTCCAGGGTAGGAGGGAGAGAGGGAGAGAGGGACG
ATGTGTCGCAGAGGGATGTATGTGCATTGCACAGGTGCTAGCCGCGTGAT
TACGTCACCGCTAGAATACCTGCTCGCTTTAGAGACCGCTGTAAAAGGCA
AGAAGGGCAGGCGCGTCGTGGTCAATCTGAACGATTTGCGGGAATTCGAC
GTGGAATTGGCACGCACAAACAACAATTCGTAGAATTCCTTGAAGCGGAA
GATGGTCCGGCTAATTACAAGGATAGCATCGCGCACACCCTAAATGAACG
ATGTTCTAAATCAAGACCATCAGCCGGAGGAGCTCCGGCGCGTGCGCGTA
GACATGGGAACACTAGACAGGAGGTAGCGCAGCGCCTGGACCCAAGTTTT
GGGAAATTGCTTTCGCAGCACGACCAGTTAAAAGTGGGCTTCGATGGTGC
CTTTGGGAGGAACCATGTGTCTCCGCGCGGGCTCACCTCCAGGGTAGGAG
GGAGAGAGGGAGAGAGGGACGATGTGTCGCAGAGGGATGTATGTGCATTG
CACAGGTGCTAGCCGCGTGATTACGTCACCGCTAGAATACCTGCTCGCTT
TAGAGACCGCTGTAAAAGGCAAGAAGGGCAGGCGCGTCGTGGTCAATCTG
AACGATTTGCGGGAATTCGACGTGGAATTGGCACGCACAAACAACAATTC
GTAGAATTCCTTGAAGCGGAAGATGGTCCGGCTAATTACAAGGATAGCAT
CGCGCACACCCTAAATGAACGATGTTCTAAATCAAGACCATCAGCCGGAG
GAGCTCCGGCGCGTGCGCGTAGACATGGGAACACTAGACAGGAGGTAGCG
CAGCGCCTGGACCCAAGTTTTGGGAAATTGCTTTCGCAGCACGACCAGTT
AAAAGTGGGCTTCGATGGTGCCTTTGGGAGGAACCATGTGTCTCCGCGCG
GGCTCACCTCCAGGGTAGGAGGGAGAGAGGGAGAGAGGGACGATGTGTCG
CAGAGGGATGTATGTGCATTGCACAGGTGCTAGCCGCGTGATTACGTCAC
CGCTAGAATACCTGCTCGCTTTAGAGACCGCTGTAAAAGGCAAGAAGGGC
AGGCGCGTCGTGGTCAATCTGAACGATTTGCGGGAATTCGACGTGGAATT
GGCACGCACAAACAACAATTCGTAGAATTCCTTGAAGCGGAAGATGGTCC
GGCTAATTACAAGGATAGCATCGCGCACACCCTAAATGAACGATGTTCTA
AATCAAGACCATCAGCCGGAGGAGCTCCGGCGCGTGCGCGTAGACATGGG
AACACTAGACAGGAGGTAGCGCAGCGCCTGGACCCAAGTTTTGGGAAATT
GCTTTCGCAGCACGACCAGTTAAAAGTGGGCTTCGATGGTGCCTTTGGGA
GGAACCATGTGTCTCCGCGCGGGCTCACCTCCAGGGTAGGAGGGAGAGAG
GGAGAGAGGGACGATGTGTCGCAGAGGGATGTATGTGCATTGCACAGGTG
CTAGCCGCGTGATTACGTCACCGCTAGAATACCTGCTCGCTTTAGAGACC
GCTGTAAAAGGCAAGAAGGGCAGGCGCGTCGTGGTCAATCTGAACGATTT
GCGGGAATTCGACGTGGAATTGGCACGCACAAACAACAATTCGTAGAATT
CCTTGAAGCGGAAGATGGTCCGGCTAATTACAAGGATAGCATCGCGCACA
CCCTAAATGAACGATGTTCTAAATCAAGACCATCAGCCGGAGGAGCTCCG
GCGCGTGCGCGTAGACATGGGAACACTAGACAGGAGGTAGCGCAGCGCCT
GGACCCAAGTTTTGGGAAATTGCTTTCGCAGCACGACCAGTTAAAAGTGG
GCTTCGATGGTGCCTTTGGGAGGAACCATGTGTCTCCGCGCGGGCTCACC
TCCAGGGTAGGAGGGAGAGAGGGAGAGAGGGACGATGTGTCGCAGAGGGA
TGTATGTGCATTGCACAGGTGCTAGCCGCGTGATTACGTCACCGCTAGAA
TACCTGCTCGCTTTAGAGACCGCTGTAAAAGGCAAGAAGGGCAGGCGCGT
CGTGGTCAATCTGAACGATTTGCGGGAATTCGACGTGGAATTGGCACGCA
CAAACAACAATTCGTAGAATTCCTTGAAGCGGAAGATGGTCCGGCTAATT
ACAAGGATAGCATCGCGCACACCCTAAATGAACGATGTTCTAAATCAAGA
CCATCAGCCGGAGGAGCTCCGGCGCGTGCGCGTAGACATGGGAACACTAG
ACAGG
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Synonyms
Publications