EWM30133.1, cds539 (CDS) Nannochloropsis gaditana

Overview
NameEWM30133.1
Unique Namecds539
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:1347139..1347216 -
Alignment locationCM002455.1:1346976..1347054 -
Alignment locationCM002455.1:1346776..1346842 -
Alignment locationCM002455.1:1346632..1346687 -
Alignment locationCM002455.1:1346325..1346515 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM30133.1
Productdna replication licensing factor mcm3
Orig transcript idgnl|cribi|Naga_100332g1.10248.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1347139..1347216 -
CM002455.1supercontigCM002455.1:1346976..1347054 -
CM002455.1supercontigCM002455.1:1346776..1346842 -
CM002455.1supercontigCM002455.1:1346632..1346687 -
CM002455.1supercontigCM002455.1:1346325..1346515 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006259DNA metabolic process
GO:0009058biosynthetic process
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold
IPR027925MCM_N
Homology
BLAST of EWM30133.1 vs. NCBI_GenBank
Match: gi|585112785|gb|EWM30133.1| (dna replication licensing factor mcm3 [Nannochloropsis gaditana])

HSP 1 Score: 317.775 bits (813), Expect = 8.195e-110
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0
Query:    1 MNDVLNQDHQPEELRRVRVDMGTLDRHKQQFVEFLEAEDGPANYKDSIAHTLSKKGRRVVVNLNDLREFDVELARRVITSPLEYLLALETAVKEVAQRLDPSFGKLLSQHDQLKVGFDGAFGRNHVSPRGLTSRVGGREGERDDVSQRDVCALHRC 156
            MNDVLNQDHQPEELRRVRVDMGTLDRHKQQFVEFLEAEDGPANYKDSIAHTLSKKGRRVVVNLNDLREFDVELARRVITSPLEYLLALETAVKEVAQRLDPSFGKLLSQHDQLKVGFDGAFGRNHVSPRGLTSRVGGREGERDDVSQRDVCALHRC
Sbjct:    1 MNDVLNQDHQPEELRRVRVDMGTLDRHKQQFVEFLEAEDGPANYKDSIAHTLSKKGRRVVVNLNDLREFDVELARRVITSPLEYLLALETAVKEVAQRLDPSFGKLLSQHDQLKVGFDGAFGRNHVSPRGLTSRVGGREGERDDVSQRDVCALHRC 156          
BLAST of EWM30133.1 vs. NCBI_GenBank
Match: gi|553177421|ref|XP_005852466.1| (dna replication licensing factor mcm3, partial [Nannochloropsis gaditana CCMP526] >gi|422296068|gb|EKU23367.1| dna replication licensing factor mcm3, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 273.092 bits (697), Expect = 4.115e-91
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0
Query:    1 MNDVLNQDHQPEELRRVRVDMGTLDRHKQQFVEFLEAEDGPANYKDSIAHTLSKKGRRVVVNLNDLREFDVELARRVITSPLEYLLALETAVKEVAQRLDPSFGKLLSQHDQLKVGFDGAFGRNHVSPRGLTSR 134
            MNDVLNQDHQPEELRRVRVDMGTLDRHKQQFVEFLEAEDGPANYKDSIAHTLSKKGRRVVVNLNDLREFDVELARRVITSPLEYLLALETAVKEVAQRLDPSFGKLLSQHDQLKVGFDGAFGRNHVSPRGLTSR
Sbjct:    1 MNDVLNQDHQPEELRRVRVDMGTLDRHKQQFVEFLEAEDGPANYKDSIAHTLSKKGRRVVVNLNDLREFDVELARRVITSPLEYLLALETAVKEVAQRLDPSFGKLLSQHDQLKVGFDGAFGRNHVSPRGLTSR 134          
BLAST of EWM30133.1 vs. NCBI_GenBank
Match: gi|5725522|gb|AAD48088.1| (replication origin activator 4, partial [Zea mays])

HSP 1 Score: 84.3445 bits (207), Expect = 1.551e-17
Identity = 44/111 (39.64%), Postives = 68/111 (61.26%), Query Frame = 0
Query:   27 HKQQFVEFLEAEDGPANYKDSIAHTLSKKGRRVVVNLNDLREFDVELARRVITSPLEYLLALETAVKEVAQRLDPSFGKLLSQHDQLKVGFDGAFGRNHVSPRGLTSRVGG 137
            HK+ F++FL+ + G   Y  ++   +  K  R+++ ++DLR  +++LARRVI SP EY+     AV EVA+ LDP F   L + +++ VGF G FG + V+PR L S   G
Sbjct:   11 HKRAFLDFLDQDVGKGVYMQAVRDMVQNKRHRLIIGMDDLRNHNLDLARRVIRSPGEYMQPASDAVSEVAKNLDPKF---LKEGERVMVGFSGPFGFHRVTPRDLMSSFIG 118          
BLAST of EWM30133.1 vs. NCBI_GenBank
Match: gi|1142836368|gb|AQK94454.1| (Putative mini-chromosome maintenance (MCM) complex protein family [Zea mays])

HSP 1 Score: 83.9593 bits (206), Expect = 2.661e-17
Identity = 44/111 (39.64%), Postives = 68/111 (61.26%), Query Frame = 0
Query:   27 HKQQFVEFLEAEDGPANYKDSIAHTLSKKGRRVVVNLNDLREFDVELARRVITSPLEYLLALETAVKEVAQRLDPSFGKLLSQHDQLKVGFDGAFGRNHVSPRGLTSRVGG 137
            HK+ F++FL+ + G   Y  ++   +  K  R+++ ++DLR  +++LARRVI SP EY+     AV EVA+ LDP   K L + +++ VGF G FG + V+PR L S   G
Sbjct:   11 HKRAFLDFLDQDVGKGVYMQAVRDMVQNKRHRLIIGMDDLRNHNLDLARRVIRSPGEYMQPASDAVSEVAKNLDP---KFLKEGERVMVGFSGPFGFHRVTPRDLMSSFIG 118          
BLAST of EWM30133.1 vs. NCBI_GenBank
Match: gi|1142828605|gb|AQK86692.1| (DNA replication licensing factor MCM3 homolog 2 [Zea mays])

HSP 1 Score: 83.1889 bits (204), Expect = 3.633e-17
Identity = 43/111 (38.74%), Postives = 68/111 (61.26%), Query Frame = 0
Query:   27 HKQQFVEFLEAEDGPANYKDSIAHTLSKKGRRVVVNLNDLREFDVELARRVITSPLEYLLALETAVKEVAQRLDPSFGKLLSQHDQLKVGFDGAFGRNHVSPRGLTSRVGG 137
            HK+ F++FL+ + G   Y  ++   +  K  R+++ ++DLR  +++LARRVI +P EY+     AV EVA+ LDP F   L + +++ VGF G FG + V+PR L S   G
Sbjct:   11 HKRAFLDFLDQDVGKGVYMQAVRDMVQNKRHRLIIGMDDLRNHNLDLARRVIRTPGEYMQPASDAVSEVARNLDPKF---LKEGERVMVGFSGPFGFHRVTPRDLMSSFIG 118          
BLAST of EWM30133.1 vs. NCBI_GenBank
Match: gi|4558460|gb|AAD22611.1|AF073775_1 (replication origin activator ROA2, partial [Zea mays])

HSP 1 Score: 83.1889 bits (204), Expect = 4.615e-17
Identity = 43/111 (38.74%), Postives = 68/111 (61.26%), Query Frame = 0
Query:   27 HKQQFVEFLEAEDGPANYKDSIAHTLSKKGRRVVVNLNDLREFDVELARRVITSPLEYLLALETAVKEVAQRLDPSFGKLLSQHDQLKVGFDGAFGRNHVSPRGLTSRVGG 137
            HK+ F++FL+ + G   Y  ++   +  K  R+++ ++DLR  +++LARRVI +P EY+     AV EVA+ LDP F   L + +++ VGF G FG + V+PR L S   G
Sbjct:   11 HKRAFLDFLDQDVGKGVYMQAVRDMVQNKRHRLIIGMDDLRNHNLDLARRVIRTPGEYMQPASDAVSEVARNLDPKF---LKEGERVMVGFSGPFGFHRVTPRDLMSSFIG 118          
BLAST of EWM30133.1 vs. NCBI_GenBank
Match: gi|923120460|ref|XP_013753702.1| (DNA replication licensing factor MCM3 [Thecamonas trahens ATCC 50062] >gi|906561161|gb|KNC54404.1| DNA replication licensing factor MCM3 [Thecamonas trahens ATCC 50062])

HSP 1 Score: 85.8853 bits (211), Expect = 1.510e-16
Identity = 41/104 (39.42%), Postives = 64/104 (61.54%), Query Frame = 0
Query:   28 KQQFVEFLEAEDGPANYKDSIAHTLSKKGRRVVVNLNDLREFDVELARRVITSPLEYLLALETAVKEVAQRLDPSFGKLLSQHDQLKVGFDGAFGRNHVSPRGL 131
            K QF EFL+A+ G   Y D +   + K  RR++V++NDLR     LA+ V+T P +YL   E A+ E+  +  PS+   +     +++GF+G+FG +HV+PRGL
Sbjct:    9 KSQFYEFLDADAGQGVYMDKVREMMRKHQRRLMVSVNDLRAHSPHLAKHVLTQPAKYLFLFEAALAEIVAKEAPSY---VDPDHPVRIGFEGSFGLHHVTPRGL 109          
BLAST of EWM30133.1 vs. NCBI_GenBank
Match: gi|1174554047|gb|OQU81624.1| (hypothetical protein SORBI_3006G087500 [Sorghum bicolor])

HSP 1 Score: 84.7297 bits (208), Expect = 3.168e-16
Identity = 44/111 (39.64%), Postives = 68/111 (61.26%), Query Frame = 0
Query:   27 HKQQFVEFLEAEDGPANYKDSIAHTLSKKGRRVVVNLNDLREFDVELARRVITSPLEYLLALETAVKEVAQRLDPSFGKLLSQHDQLKVGFDGAFGRNHVSPRGLTSRVGG 137
            HK+ F++FL+ + G   Y  ++   +  K  R+++ ++DLR  +++LARRVI SP EY+     AV EVA+ LDP F   L + +++ VGF G FG + V+PR L S   G
Sbjct:   11 HKRAFLDFLDQDVGKGVYMQAVRDMVQNKRHRLIIGMDDLRNHNLDLARRVIRSPGEYMQPASDAVSEVAKNLDPKF---LKEGERVMVGFSGPFGFHRVTPRDLMSSFIG 118          
BLAST of EWM30133.1 vs. NCBI_GenBank
Match: gi|992164410|gb|KXG26358.1| (hypothetical protein SORBI_3006G087500 [Sorghum bicolor])

HSP 1 Score: 84.7297 bits (208), Expect = 3.226e-16
Identity = 44/111 (39.64%), Postives = 68/111 (61.26%), Query Frame = 0
Query:   27 HKQQFVEFLEAEDGPANYKDSIAHTLSKKGRRVVVNLNDLREFDVELARRVITSPLEYLLALETAVKEVAQRLDPSFGKLLSQHDQLKVGFDGAFGRNHVSPRGLTSRVGG 137
            HK+ F++FL+ + G   Y  ++   +  K  R+++ ++DLR  +++LARRVI SP EY+     AV EVA+ LDP F   L + +++ VGF G FG + V+PR L S   G
Sbjct:   11 HKRAFLDFLDQDVGKGVYMQAVRDMVQNKRHRLIIGMDDLRNHNLDLARRVIRSPGEYMQPASDAVSEVAKNLDPKF---LKEGERVMVGFSGPFGFHRVTPRDLMSSFIG 118          
BLAST of EWM30133.1 vs. NCBI_GenBank
Match: gi|992164409|gb|KXG26357.1| (hypothetical protein SORBI_3006G087500 [Sorghum bicolor])

HSP 1 Score: 84.7297 bits (208), Expect = 3.378e-16
Identity = 44/111 (39.64%), Postives = 68/111 (61.26%), Query Frame = 0
Query:   27 HKQQFVEFLEAEDGPANYKDSIAHTLSKKGRRVVVNLNDLREFDVELARRVITSPLEYLLALETAVKEVAQRLDPSFGKLLSQHDQLKVGFDGAFGRNHVSPRGLTSRVGG 137
            HK+ F++FL+ + G   Y  ++   +  K  R+++ ++DLR  +++LARRVI SP EY+     AV EVA+ LDP F   L + +++ VGF G FG + V+PR L S   G
Sbjct:   11 HKRAFLDFLDQDVGKGVYMQAVRDMVQNKRHRLIIGMDDLRNHNLDLARRVIRSPGEYMQPASDAVSEVAKNLDPKF---LKEGERVMVGFSGPFGFHRVTPRDLMSSFIG 118          
The following BLAST results are available for this feature:
BLAST of EWM30133.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112785|gb|EWM30133.1|8.195e-110100.00dna replication licensing factor mcm3 [Nannochloro... [more]
gi|553177421|ref|XP_005852466.1|4.115e-91100.00dna replication licensing factor mcm3, partial [Na... [more]
gi|5725522|gb|AAD48088.1|1.551e-1739.64replication origin activator 4, partial [Zea mays][more]
gi|1142836368|gb|AQK94454.1|2.661e-1739.64Putative mini-chromosome maintenance (MCM) complex... [more]
gi|1142828605|gb|AQK86692.1|3.633e-1738.74DNA replication licensing factor MCM3 homolog 2 [Z... [more]
gi|4558460|gb|AAD22611.1|AF073775_14.615e-1738.74replication origin activator ROA2, partial [Zea ma... [more]
gi|923120460|ref|XP_013753702.1|1.510e-1639.42DNA replication licensing factor MCM3 [Thecamonas ... [more]
gi|1174554047|gb|OQU81624.1|3.168e-1639.64hypothetical protein SORBI_3006G087500 [Sorghum bi... [more]
gi|992164410|gb|KXG26358.1|3.226e-1639.64hypothetical protein SORBI_3006G087500 [Sorghum bi... [more]
gi|992164409|gb|KXG26357.1|3.378e-1639.64hypothetical protein SORBI_3006G087500 [Sorghum bi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna539rna539Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications