EWM30133.1, cds539 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM30133.1 vs. NCBI_GenBank
Match: gi|585112785|gb|EWM30133.1| (dna replication licensing factor mcm3 [Nannochloropsis gaditana]) HSP 1 Score: 317.775 bits (813), Expect = 8.195e-110 Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0
Query: 1 MNDVLNQDHQPEELRRVRVDMGTLDRHKQQFVEFLEAEDGPANYKDSIAHTLSKKGRRVVVNLNDLREFDVELARRVITSPLEYLLALETAVKEVAQRLDPSFGKLLSQHDQLKVGFDGAFGRNHVSPRGLTSRVGGREGERDDVSQRDVCALHRC 156
MNDVLNQDHQPEELRRVRVDMGTLDRHKQQFVEFLEAEDGPANYKDSIAHTLSKKGRRVVVNLNDLREFDVELARRVITSPLEYLLALETAVKEVAQRLDPSFGKLLSQHDQLKVGFDGAFGRNHVSPRGLTSRVGGREGERDDVSQRDVCALHRC
Sbjct: 1 MNDVLNQDHQPEELRRVRVDMGTLDRHKQQFVEFLEAEDGPANYKDSIAHTLSKKGRRVVVNLNDLREFDVELARRVITSPLEYLLALETAVKEVAQRLDPSFGKLLSQHDQLKVGFDGAFGRNHVSPRGLTSRVGGREGERDDVSQRDVCALHRC 156
BLAST of EWM30133.1 vs. NCBI_GenBank
Match: gi|553177421|ref|XP_005852466.1| (dna replication licensing factor mcm3, partial [Nannochloropsis gaditana CCMP526] >gi|422296068|gb|EKU23367.1| dna replication licensing factor mcm3, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 273.092 bits (697), Expect = 4.115e-91 Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0
Query: 1 MNDVLNQDHQPEELRRVRVDMGTLDRHKQQFVEFLEAEDGPANYKDSIAHTLSKKGRRVVVNLNDLREFDVELARRVITSPLEYLLALETAVKEVAQRLDPSFGKLLSQHDQLKVGFDGAFGRNHVSPRGLTSR 134
MNDVLNQDHQPEELRRVRVDMGTLDRHKQQFVEFLEAEDGPANYKDSIAHTLSKKGRRVVVNLNDLREFDVELARRVITSPLEYLLALETAVKEVAQRLDPSFGKLLSQHDQLKVGFDGAFGRNHVSPRGLTSR
Sbjct: 1 MNDVLNQDHQPEELRRVRVDMGTLDRHKQQFVEFLEAEDGPANYKDSIAHTLSKKGRRVVVNLNDLREFDVELARRVITSPLEYLLALETAVKEVAQRLDPSFGKLLSQHDQLKVGFDGAFGRNHVSPRGLTSR 134
BLAST of EWM30133.1 vs. NCBI_GenBank
Match: gi|5725522|gb|AAD48088.1| (replication origin activator 4, partial [Zea mays]) HSP 1 Score: 84.3445 bits (207), Expect = 1.551e-17 Identity = 44/111 (39.64%), Postives = 68/111 (61.26%), Query Frame = 0
Query: 27 HKQQFVEFLEAEDGPANYKDSIAHTLSKKGRRVVVNLNDLREFDVELARRVITSPLEYLLALETAVKEVAQRLDPSFGKLLSQHDQLKVGFDGAFGRNHVSPRGLTSRVGG 137
HK+ F++FL+ + G Y ++ + K R+++ ++DLR +++LARRVI SP EY+ AV EVA+ LDP F L + +++ VGF G FG + V+PR L S G
Sbjct: 11 HKRAFLDFLDQDVGKGVYMQAVRDMVQNKRHRLIIGMDDLRNHNLDLARRVIRSPGEYMQPASDAVSEVAKNLDPKF---LKEGERVMVGFSGPFGFHRVTPRDLMSSFIG 118
BLAST of EWM30133.1 vs. NCBI_GenBank
Match: gi|1142836368|gb|AQK94454.1| (Putative mini-chromosome maintenance (MCM) complex protein family [Zea mays]) HSP 1 Score: 83.9593 bits (206), Expect = 2.661e-17 Identity = 44/111 (39.64%), Postives = 68/111 (61.26%), Query Frame = 0
Query: 27 HKQQFVEFLEAEDGPANYKDSIAHTLSKKGRRVVVNLNDLREFDVELARRVITSPLEYLLALETAVKEVAQRLDPSFGKLLSQHDQLKVGFDGAFGRNHVSPRGLTSRVGG 137
HK+ F++FL+ + G Y ++ + K R+++ ++DLR +++LARRVI SP EY+ AV EVA+ LDP K L + +++ VGF G FG + V+PR L S G
Sbjct: 11 HKRAFLDFLDQDVGKGVYMQAVRDMVQNKRHRLIIGMDDLRNHNLDLARRVIRSPGEYMQPASDAVSEVAKNLDP---KFLKEGERVMVGFSGPFGFHRVTPRDLMSSFIG 118
BLAST of EWM30133.1 vs. NCBI_GenBank
Match: gi|1142828605|gb|AQK86692.1| (DNA replication licensing factor MCM3 homolog 2 [Zea mays]) HSP 1 Score: 83.1889 bits (204), Expect = 3.633e-17 Identity = 43/111 (38.74%), Postives = 68/111 (61.26%), Query Frame = 0
Query: 27 HKQQFVEFLEAEDGPANYKDSIAHTLSKKGRRVVVNLNDLREFDVELARRVITSPLEYLLALETAVKEVAQRLDPSFGKLLSQHDQLKVGFDGAFGRNHVSPRGLTSRVGG 137
HK+ F++FL+ + G Y ++ + K R+++ ++DLR +++LARRVI +P EY+ AV EVA+ LDP F L + +++ VGF G FG + V+PR L S G
Sbjct: 11 HKRAFLDFLDQDVGKGVYMQAVRDMVQNKRHRLIIGMDDLRNHNLDLARRVIRTPGEYMQPASDAVSEVARNLDPKF---LKEGERVMVGFSGPFGFHRVTPRDLMSSFIG 118
BLAST of EWM30133.1 vs. NCBI_GenBank
Match: gi|4558460|gb|AAD22611.1|AF073775_1 (replication origin activator ROA2, partial [Zea mays]) HSP 1 Score: 83.1889 bits (204), Expect = 4.615e-17 Identity = 43/111 (38.74%), Postives = 68/111 (61.26%), Query Frame = 0
Query: 27 HKQQFVEFLEAEDGPANYKDSIAHTLSKKGRRVVVNLNDLREFDVELARRVITSPLEYLLALETAVKEVAQRLDPSFGKLLSQHDQLKVGFDGAFGRNHVSPRGLTSRVGG 137
HK+ F++FL+ + G Y ++ + K R+++ ++DLR +++LARRVI +P EY+ AV EVA+ LDP F L + +++ VGF G FG + V+PR L S G
Sbjct: 11 HKRAFLDFLDQDVGKGVYMQAVRDMVQNKRHRLIIGMDDLRNHNLDLARRVIRTPGEYMQPASDAVSEVARNLDPKF---LKEGERVMVGFSGPFGFHRVTPRDLMSSFIG 118
BLAST of EWM30133.1 vs. NCBI_GenBank
Match: gi|923120460|ref|XP_013753702.1| (DNA replication licensing factor MCM3 [Thecamonas trahens ATCC 50062] >gi|906561161|gb|KNC54404.1| DNA replication licensing factor MCM3 [Thecamonas trahens ATCC 50062]) HSP 1 Score: 85.8853 bits (211), Expect = 1.510e-16 Identity = 41/104 (39.42%), Postives = 64/104 (61.54%), Query Frame = 0
Query: 28 KQQFVEFLEAEDGPANYKDSIAHTLSKKGRRVVVNLNDLREFDVELARRVITSPLEYLLALETAVKEVAQRLDPSFGKLLSQHDQLKVGFDGAFGRNHVSPRGL 131
K QF EFL+A+ G Y D + + K RR++V++NDLR LA+ V+T P +YL E A+ E+ + PS+ + +++GF+G+FG +HV+PRGL
Sbjct: 9 KSQFYEFLDADAGQGVYMDKVREMMRKHQRRLMVSVNDLRAHSPHLAKHVLTQPAKYLFLFEAALAEIVAKEAPSY---VDPDHPVRIGFEGSFGLHHVTPRGL 109
BLAST of EWM30133.1 vs. NCBI_GenBank
Match: gi|1174554047|gb|OQU81624.1| (hypothetical protein SORBI_3006G087500 [Sorghum bicolor]) HSP 1 Score: 84.7297 bits (208), Expect = 3.168e-16 Identity = 44/111 (39.64%), Postives = 68/111 (61.26%), Query Frame = 0
Query: 27 HKQQFVEFLEAEDGPANYKDSIAHTLSKKGRRVVVNLNDLREFDVELARRVITSPLEYLLALETAVKEVAQRLDPSFGKLLSQHDQLKVGFDGAFGRNHVSPRGLTSRVGG 137
HK+ F++FL+ + G Y ++ + K R+++ ++DLR +++LARRVI SP EY+ AV EVA+ LDP F L + +++ VGF G FG + V+PR L S G
Sbjct: 11 HKRAFLDFLDQDVGKGVYMQAVRDMVQNKRHRLIIGMDDLRNHNLDLARRVIRSPGEYMQPASDAVSEVAKNLDPKF---LKEGERVMVGFSGPFGFHRVTPRDLMSSFIG 118
BLAST of EWM30133.1 vs. NCBI_GenBank
Match: gi|992164410|gb|KXG26358.1| (hypothetical protein SORBI_3006G087500 [Sorghum bicolor]) HSP 1 Score: 84.7297 bits (208), Expect = 3.226e-16 Identity = 44/111 (39.64%), Postives = 68/111 (61.26%), Query Frame = 0
Query: 27 HKQQFVEFLEAEDGPANYKDSIAHTLSKKGRRVVVNLNDLREFDVELARRVITSPLEYLLALETAVKEVAQRLDPSFGKLLSQHDQLKVGFDGAFGRNHVSPRGLTSRVGG 137
HK+ F++FL+ + G Y ++ + K R+++ ++DLR +++LARRVI SP EY+ AV EVA+ LDP F L + +++ VGF G FG + V+PR L S G
Sbjct: 11 HKRAFLDFLDQDVGKGVYMQAVRDMVQNKRHRLIIGMDDLRNHNLDLARRVIRSPGEYMQPASDAVSEVAKNLDPKF---LKEGERVMVGFSGPFGFHRVTPRDLMSSFIG 118
BLAST of EWM30133.1 vs. NCBI_GenBank
Match: gi|992164409|gb|KXG26357.1| (hypothetical protein SORBI_3006G087500 [Sorghum bicolor]) HSP 1 Score: 84.7297 bits (208), Expect = 3.378e-16 Identity = 44/111 (39.64%), Postives = 68/111 (61.26%), Query Frame = 0
Query: 27 HKQQFVEFLEAEDGPANYKDSIAHTLSKKGRRVVVNLNDLREFDVELARRVITSPLEYLLALETAVKEVAQRLDPSFGKLLSQHDQLKVGFDGAFGRNHVSPRGLTSRVGG 137
HK+ F++FL+ + G Y ++ + K R+++ ++DLR +++LARRVI SP EY+ AV EVA+ LDP F L + +++ VGF G FG + V+PR L S G
Sbjct: 11 HKRAFLDFLDQDVGKGVYMQAVRDMVQNKRHRLIIGMDDLRNHNLDLARRVIRSPGEYMQPASDAVSEVAKNLDPKF---LKEGERVMVGFSGPFGFHRVTPRDLMSSFIG 118 The following BLAST results are available for this feature:
BLAST of EWM30133.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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