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Properties
| Property Name | Value |
|---|
| Product | dna ligase |
| Orig transcript id | gnl|cribi|Naga_100593g3.5929.mrna |
| Orig protein id | gnl|cribi|Naga_100593g3.5929 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002465.1 | supercontig | CM002465.1:871413..873066 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5386 ID=rna5386|Name=rna5386|organism=Nannochloropsis gaditana|type=mRNA|length=1809bp
ATGACCGTGCAAGAACTACAGGCCTTGCGGGAGCGACCGGGCGGGTTGTG
GGGGAGACAGGACGGCCACGCGGCGAAGGGCGGGGAGAAACGGGGCCGGG
GCCAGGGGAAGGAGGGAGGGAGGAAGAGGAGGGCGAGGTGGGTGCCGGTG
TCGGCTTATGCGACCCCAGGGGGCATCGTGGAGGCGGAGGTGAAGGGGTC
TCTGTTTGCTGGTATGAAAATCTGTCTCTATGGAAGTGAATTCACGACGA
GGCTTCCCAATGCCCGGGCACTCGTGGGCTTAGAGGAGGGCGGGAAGGAG
GGCGGGAAGGAGGGCGTGAGGGAAAGCGGGAAGGAGGGTTGGTTTTCGAT
CGAGGAGCTGCATCGTGTGATCGTGGAGCAAGGGGGGCAAGCCAGCACGA
ATCTGATGGAAATAGAGAAGGGTCCGTGGGATGGTGGTGAGGGAGGGGAG
GAGGAAGCAGGTGGCGTGGAAGGAGGGCGAGGAGGCGACCCGGCGGTCAC
GTCCGAGGGCAATCGCCACCCCAACCCACCCTTTGTCTCCCCAGTATACG
GAATGGACATCCAAAGGTCCCCCTCGCCAGGCATAAGCAAGTCGCCGCCA
CAGCCCCAGCGGTACGAGCAAGACGTGTTGCTCGTCCCCGCCGGTCGCCC
GTGCCTGAGGACCCAAGCCGCGATTCGGGAGGCGCGCATCGACATCCTGG
TCGTGGACTGGCTGGTGGAGTGCCTTGGGGCCGGCCGGCGGATCGAACCT
CGGTACGAGCACTACGTGGGCATGGACCGTGGGACCCGGCGACGGATGGA
AGGTCTTGTGGACGGGTTTGGAGACCCCTGGATTCCGAGGGAGGGAAGCA
GGTTGGAGGAGGTCTTTGCCCGGATGCCCTCCCTCTCTCCCTCGCGTGGT
CCTTCCCTGTCTGGGGCCTGGCGGTGCCATGTACGCGAAGGGGCGTGGGG
GGACGACGAGGATGCCATCCTCCGGGGGGTAGTGCCCTTTTATTCGCCGC
GTCAAATCATTTATGCCGATCGCTACGCAGACTGCGGACGTGTGCTTCCG
CCAGTCGGGGAGGAAGACGACGAAGAAGCGACGGATGACAAGGAAGTAGG
GACAAGAGAAGCCAAAGGACGAAAAAGGCACGCTTTGCCCTTCACCACCT
TGGATGCGGCAGTAATCCTGCTCCGACTGCATGGCGCGAAAATCTCCTCC
TCTTTGCATGCCAACGTGACCCACGTCCTTGTGGACCGAGAGGAGCGACG
ACGGTATTCCTTGATTTTGGCGCGAAAACGAGAATTGCGTCGAGGGCCTC
ATTATGCCTGTGAGAAATGGGTGGTGGATGTCGAGTGGGTGAAGGCCAGC
CTGAAAGCAGGGCGCTTGCTCGATCTACAGGAGGGTGGGATAGAGGAATG
CGAGGAAGGGTGTCAGCGGTATGTGGTCTCAGACCAGGAATTAAAGGAAG
GAGCGGGCATGGAGTAGGGAGTGAGAACGTGGATGGAACAAACAGGAGAG
TTTGTTCAGAGGAGGTATTAGTGAGAATGTCGAGAGGAAAAGATGCGGTT
GGTGATTTGAGCAATAATTACGATTGTAGATTTTAATTTGAGGCGTCAGA
ATGTTAACACGATGGTGATAGCGCTTTAAAGGAATTTTAAAAATGTAAAA
ACGAAAGTAATTGTGTAACACACGATACCTGGACAGCCGTGACGCGGAGA
TCCCATGTGTACGACATAGGAGAGCAAACACCAATTAATTGAGTTCGAAA
AGTAAAAAAGGTTTCTTTCTCGTGATTAATCCTCTCTCTTAAAGCGGAGA
AGCGGGCCC back to topprotein sequence of rna5386 >rna5386-protein ID=rna5386-protein|Name=rna5386|organism=Nannochloropsis gaditana|type=polypeptide|length=297bp
MAGMWALDTMALPSVKDNMEDASRSSENLTGVDQHAAESYPTAPKATDPV
DTRQDFTEEALVKLEAAANSLPFAHFCDKCEKAAQAKSAQKKRSIFFDKE
LIYRLQRASPGPVSIFPILRFLLPETDPRQGQFKLRHRTMGDVIVKTLGL
ATKSKAALRIMNFSMPEHNGPRMGPNGRILNTLGDFGSTIEDVLVSRIRQ
TPSDLSLLEVNEWLDKLVSAPPRSHAKRKEREREEIFTQLSTLLNPREMK
WLIRIILGDLKCGFKKDSVLKVFGQDGPGRLQRSYDLRKVCAEYAVK back to topmRNA from alignment at CM002465.1:871413..873066- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5386 ID=rna5386|Name=rna5386|organism=Nannochloropsis gaditana|type=mRNA|length=1654bp|location=Sequence derived from alignment at CM002465.1:871413..873066- (Nannochloropsis gaditana)
GCAGAAGGCCGGCGTGCCATGGCGGGCATGTGGGCTTTAGACACGATGGC
GCTGCCGTCGGTGAAAGACAACATGGAGGATGCCTCTCGATCGTCCGAAA
ACTTGACGGGAGTTGATCAACATGCGGCTGAATCGTATCCTACGGCTCCA
AAGGCCACCGACCCTGTGGATACGAGGCAAGACTTCACGGAAGAGGCTTT
GGTCAAGCTAGAAGCAGCCGCAAACTCGTTGCCTTTTGCCCACTTTTGTG
ACAAATGTGAGAAAGCAGCCCAAGCTAAGAGTGCACAGAAGAAGCGTTCC
ATTTTTTTCGACAAGGAACTAATATATCGGCTCCAGCGTGCCTCGCCTGG
GCCCGTCTCCATCTTCCCAATTTTGCGTTTTTTGCTTCCCGAGACCGATC
CACGGCAGGGACAGTTCAAGCTGAGGCACCGAACGATGGGAGATGTCATC
GTAAAGACTTTGGGCTTGGCGACGAAATCTAAAGCGGCACTACGGATCAT
GAACTTCTCAATGCCGGAACAGTAAGTGGGGGCTGGGCTGGAGGAGGGCC
ACAGAGGGATGCATCCAGGGGGGGGGGGGTAAATCGACGTGCGACGGCCC
AGTCAGTGCATCATTACCTTCTATAACCTGTCTGCGAGTCTTCTAATCCT
TGTCATCCTTTATTCTGCATCTTGGCGCGTTCTACTCTCTCTTGGCGGTA
CTGGTCCTCGTCTAACTATAGCCCTCCTTCCTCTTTCCCTCCTTCCGTTC
TCCCGTCCTACCCTCGGTCCTTTCGCGCCATATTTTTCGTACGCACCAAG
TAACGGACCCAGGATGGGACCCAATGGTCGTATTTTGAATACATTGGGGG
ACTTTGGCAGCACCATTGAGGACGTGCTCGTTTCCCGCATCCGACAGGTA
CACTTTCCCCCTCCCTCCCTTTAGCCTTCCTTCTCGACTCCTTTTCTTCC
AGCATACTCTGATTGATGCAATTGTTGTCACTTGTAAGCTAACCTTCCTT
TCCTCCTTCTTTCCCCTTCCATTTGCCCTCTCTTTGCGCTTCCACCAGAC
TCCCTCTGACTTGTCTCTCCTGGAGGTCAACGAATGGCTGGACAAGCTGG
TATCAGCCCCGCCGCGTTCCCACGCCAAGCGGAAGGAGCGTGAAAGAGAA
GAAATATTCACCCAGCTTTCCACCCTGTTGAACCCTCGGGAGATGAAATG
GCTGGTAAGAGGGAGAGGAAGGGGCCGTGGAGCGGGTGGAAAGGCACGAT
AAGGACCGAAACATAGGATCGAGGAACGCCTTCTTGGCCCATGCCTGCCG
GTCGCTGTAGTTCTAGCCGACCTTTTCACGGATTTTGTTTTGTTTCCCTT
CCTTTCCCCCCTCGCCCCCGGCCGTATTCGGCTATTTTACTCAATTCTGC
CAGATTCGGATCATTTTGGGCGACCTGAAGTGTGGGTTCAAGAAAGATTC
GGTCCTCAAAGTGTTCGGCCAAGACGGGCCAGGGCGCCTGCAGAGAAGCT
ACGACCTGCGAAAAGTCTGCGCAGAGTATGCCGTCAAGTAGGGAGGGTGG
AGGGAGGGCGGCGAGAGGGAAAGAGGGACCACGGGGAGGGCCAAGGATTT
TTTGGTGCACCACTTTCTTTCCTGCACGCATTTTCCTCGTCCCCGTCCCT
TCCC back to topCoding sequence (CDS) from alignment at CM002465.1:871413..873066- >rna5386 ID=rna5386|Name=rna5386|organism=Nannochloropsis gaditana|type=CDS|length=3576bp|location=Sequence derived from alignment at CM002465.1:871413..873066- (Nannochloropsis gaditana)
ATTCGGATCATTTTGGGCGACCTGAAGTGTGGGTTCAAGAAAGATTCGGT
CCTCAAAGTGTTCGGCCAAGACGGGCCAGGGCGCCTGCAGAGAAGCTACG
ACCTGCGAAAAGTCTGCGCAGAGTATGCCGTCAAGTAGACTCCCTCTGAC
TTGTCTCTCCTGGAGGTCAACGAATGGCTGGACAAGCTGGTATCAGCCCC
GCCGCGTTCCCACGCCAAGCGGAAGGAGCGTGAAAGAGAAGAAATATTCA
CCCAGCTTTCCACCCTGTTGAACCCTCGGGAGATGAAATGGCTGTAACGG
ACCCAGGATGGGACCCAATGGTCGTATTTTGAATACATTGGGGGACTTTG
GCAGCACCATTGAGGACGTGCTCGTTTCCCGCATCCGACAGATGGCGGGC
ATGTGGGCTTTAGACACGATGGCGCTGCCGTCGGTGAAAGACAACATGGA
GGATGCCTCTCGATCGTCCGAAAACTTGACGGGAGTTGATCAACATGCGG
CTGAATCGTATCCTACGGCTCCAAAGGCCACCGACCCTGTGGATACGAGG
CAAGACTTCACGGAAGAGGCTTTGGTCAAGCTAGAAGCAGCCGCAAACTC
GTTGCCTTTTGCCCACTTTTGTGACAAATGTGAGAAAGCAGCCCAAGCTA
AGAGTGCACAGAAGAAGCGTTCCATTTTTTTCGACAAGGAACTAATATAT
CGGCTCCAGCGTGCCTCGCCTGGGCCCGTCTCCATCTTCCCAATTTTGCG
TTTTTTGCTTCCCGAGACCGATCCACGGCAGGGACAGTTCAAGCTGAGGC
ACCGAACGATGGGAGATGTCATCGTAAAGACTTTGGGCTTGGCGACGAAA
TCTAAAGCGGCACTACGGATCATGAACTTCTCAATGCCGGAACAATTCGG
ATCATTTTGGGCGACCTGAAGTGTGGGTTCAAGAAAGATTCGGTCCTCAA
AGTGTTCGGCCAAGACGGGCCAGGGCGCCTGCAGAGAAGCTACGACCTGC
GAAAAGTCTGCGCAGAGTATGCCGTCAAGTAGACTCCCTCTGACTTGTCT
CTCCTGGAGGTCAACGAATGGCTGGACAAGCTGGTATCAGCCCCGCCGCG
TTCCCACGCCAAGCGGAAGGAGCGTGAAAGAGAAGAAATATTCACCCAGC
TTTCCACCCTGTTGAACCCTCGGGAGATGAAATGGCTGTAACGGACCCAG
GATGGGACCCAATGGTCGTATTTTGAATACATTGGGGGACTTTGGCAGCA
CCATTGAGGACGTGCTCGTTTCCCGCATCCGACAGATGGCGGGCATGTGG
GCTTTAGACACGATGGCGCTGCCGTCGGTGAAAGACAACATGGAGGATGC
CTCTCGATCGTCCGAAAACTTGACGGGAGTTGATCAACATGCGGCTGAAT
CGTATCCTACGGCTCCAAAGGCCACCGACCCTGTGGATACGAGGCAAGAC
TTCACGGAAGAGGCTTTGGTCAAGCTAGAAGCAGCCGCAAACTCGTTGCC
TTTTGCCCACTTTTGTGACAAATGTGAGAAAGCAGCCCAAGCTAAGAGTG
CACAGAAGAAGCGTTCCATTTTTTTCGACAAGGAACTAATATATCGGCTC
CAGCGTGCCTCGCCTGGGCCCGTCTCCATCTTCCCAATTTTGCGTTTTTT
GCTTCCCGAGACCGATCCACGGCAGGGACAGTTCAAGCTGAGGCACCGAA
CGATGGGAGATGTCATCGTAAAGACTTTGGGCTTGGCGACGAAATCTAAA
GCGGCACTACGGATCATGAACTTCTCAATGCCGGAACAATTCGGATCATT
TTGGGCGACCTGAAGTGTGGGTTCAAGAAAGATTCGGTCCTCAAAGTGTT
CGGCCAAGACGGGCCAGGGCGCCTGCAGAGAAGCTACGACCTGCGAAAAG
TCTGCGCAGAGTATGCCGTCAAGTAGACTCCCTCTGACTTGTCTCTCCTG
GAGGTCAACGAATGGCTGGACAAGCTGGTATCAGCCCCGCCGCGTTCCCA
CGCCAAGCGGAAGGAGCGTGAAAGAGAAGAAATATTCACCCAGCTTTCCA
CCCTGTTGAACCCTCGGGAGATGAAATGGCTGTAACGGACCCAGGATGGG
ACCCAATGGTCGTATTTTGAATACATTGGGGGACTTTGGCAGCACCATTG
AGGACGTGCTCGTTTCCCGCATCCGACAGATGGCGGGCATGTGGGCTTTA
GACACGATGGCGCTGCCGTCGGTGAAAGACAACATGGAGGATGCCTCTCG
ATCGTCCGAAAACTTGACGGGAGTTGATCAACATGCGGCTGAATCGTATC
CTACGGCTCCAAAGGCCACCGACCCTGTGGATACGAGGCAAGACTTCACG
GAAGAGGCTTTGGTCAAGCTAGAAGCAGCCGCAAACTCGTTGCCTTTTGC
CCACTTTTGTGACAAATGTGAGAAAGCAGCCCAAGCTAAGAGTGCACAGA
AGAAGCGTTCCATTTTTTTCGACAAGGAACTAATATATCGGCTCCAGCGT
GCCTCGCCTGGGCCCGTCTCCATCTTCCCAATTTTGCGTTTTTTGCTTCC
CGAGACCGATCCACGGCAGGGACAGTTCAAGCTGAGGCACCGAACGATGG
GAGATGTCATCGTAAAGACTTTGGGCTTGGCGACGAAATCTAAAGCGGCA
CTACGGATCATGAACTTCTCAATGCCGGAACAATTCGGATCATTTTGGGC
GACCTGAAGTGTGGGTTCAAGAAAGATTCGGTCCTCAAAGTGTTCGGCCA
AGACGGGCCAGGGCGCCTGCAGAGAAGCTACGACCTGCGAAAAGTCTGCG
CAGAGTATGCCGTCAAGTAGACTCCCTCTGACTTGTCTCTCCTGGAGGTC
AACGAATGGCTGGACAAGCTGGTATCAGCCCCGCCGCGTTCCCACGCCAA
GCGGAAGGAGCGTGAAAGAGAAGAAATATTCACCCAGCTTTCCACCCTGT
TGAACCCTCGGGAGATGAAATGGCTGTAACGGACCCAGGATGGGACCCAA
TGGTCGTATTTTGAATACATTGGGGGACTTTGGCAGCACCATTGAGGACG
TGCTCGTTTCCCGCATCCGACAGATGGCGGGCATGTGGGCTTTAGACACG
ATGGCGCTGCCGTCGGTGAAAGACAACATGGAGGATGCCTCTCGATCGTC
CGAAAACTTGACGGGAGTTGATCAACATGCGGCTGAATCGTATCCTACGG
CTCCAAAGGCCACCGACCCTGTGGATACGAGGCAAGACTTCACGGAAGAG
GCTTTGGTCAAGCTAGAAGCAGCCGCAAACTCGTTGCCTTTTGCCCACTT
TTGTGACAAATGTGAGAAAGCAGCCCAAGCTAAGAGTGCACAGAAGAAGC
GTTCCATTTTTTTCGACAAGGAACTAATATATCGGCTCCAGCGTGCCTCG
CCTGGGCCCGTCTCCATCTTCCCAATTTTGCGTTTTTTGCTTCCCGAGAC
CGATCCACGGCAGGGACAGTTCAAGCTGAGGCACCGAACGATGGGAGATG
TCATCGTAAAGACTTTGGGCTTGGCGACGAAATCTAAAGCGGCACTACGG
ATCATGAACTTCTCAATGCCGGAACA back to top
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