EWM25299.1, cds5373 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25299.1 vs. NCBI_GenBank
Match: gi|585107050|gb|EWM25299.1| (dna ligase [Nannochloropsis gaditana]) HSP 1 Score: 614.764 bits (1584), Expect = 0.000e+0 Identity = 297/297 (100.00%), Postives = 297/297 (100.00%), Query Frame = 0
Query: 1 MAGMWALDTMALPSVKDNMEDASRSSENLTGVDQHAAESYPTAPKATDPVDTRQDFTEEALVKLEAAANSLPFAHFCDKCEKAAQAKSAQKKRSIFFDKELIYRLQRASPGPVSIFPILRFLLPETDPRQGQFKLRHRTMGDVIVKTLGLATKSKAALRIMNFSMPEHNGPRMGPNGRILNTLGDFGSTIEDVLVSRIRQTPSDLSLLEVNEWLDKLVSAPPRSHAKRKEREREEIFTQLSTLLNPREMKWLIRIILGDLKCGFKKDSVLKVFGQDGPGRLQRSYDLRKVCAEYAVK 297
MAGMWALDTMALPSVKDNMEDASRSSENLTGVDQHAAESYPTAPKATDPVDTRQDFTEEALVKLEAAANSLPFAHFCDKCEKAAQAKSAQKKRSIFFDKELIYRLQRASPGPVSIFPILRFLLPETDPRQGQFKLRHRTMGDVIVKTLGLATKSKAALRIMNFSMPEHNGPRMGPNGRILNTLGDFGSTIEDVLVSRIRQTPSDLSLLEVNEWLDKLVSAPPRSHAKRKEREREEIFTQLSTLLNPREMKWLIRIILGDLKCGFKKDSVLKVFGQDGPGRLQRSYDLRKVCAEYAVK
Sbjct: 1 MAGMWALDTMALPSVKDNMEDASRSSENLTGVDQHAAESYPTAPKATDPVDTRQDFTEEALVKLEAAANSLPFAHFCDKCEKAAQAKSAQKKRSIFFDKELIYRLQRASPGPVSIFPILRFLLPETDPRQGQFKLRHRTMGDVIVKTLGLATKSKAALRIMNFSMPEHNGPRMGPNGRILNTLGDFGSTIEDVLVSRIRQTPSDLSLLEVNEWLDKLVSAPPRSHAKRKEREREEIFTQLSTLLNPREMKWLIRIILGDLKCGFKKDSVLKVFGQDGPGRLQRSYDLRKVCAEYAVK 297
BLAST of EWM25299.1 vs. NCBI_GenBank
Match: gi|553185516|ref|XP_005854259.1| (dna ligase 4-like protein [Nannochloropsis gaditana CCMP526] >gi|422294800|gb|EKU22100.1| dna ligase 4-like protein [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 411.764 bits (1057), Expect = 9.888e-144 Identity = 198/201 (98.51%), Postives = 199/201 (99.00%), Query Frame = 0
Query: 1 MAGMWALDTMALPSVKDNMEDASRSSENLTGVDQHAAESYPTAPKATDPVDTRQDFTEEALVKLEAAANSLPFAHFCDKCEKAAQAKSAQKKRSIFFDKELIYRLQRASPGPVSIFPILRFLLPETDPRQGQFKLRHRTMGDVIVKTLGLATKSKAALRIMNFSMPEHNGPRMGPNGRILNTLGDFGSTIEDVLVSRIRQT 201
MAGMWALDTMALPSVKDNMEDASRSSENLTGVDQHAAESYPTAPKA DPVDTRQ+FTEEALVKLEAAANSLPFAHFCDKCEKAAQAKSAQKKRSIFFDKELIYRLQRASPGPVSIFPILRFLLPETDPRQGQFKLRHRTMGDVIVKTLGLATKSKAALRIMNFSMPEHNGPRMGPNGRILNTLGDFGSTIEDVLVSRIRQ
Sbjct: 1 MAGMWALDTMALPSVKDNMEDASRSSENLTGVDQHAAESYPTAPKAIDPVDTRQNFTEEALVKLEAAANSLPFAHFCDKCEKAAQAKSAQKKRSIFFDKELIYRLQRASPGPVSIFPILRFLLPETDPRQGQFKLRHRTMGDVIVKTLGLATKSKAALRIMNFSMPEHNGPRMGPNGRILNTLGDFGSTIEDVLVSRIRQV 201
BLAST of EWM25299.1 vs. NCBI_GenBank
Match: gi|641675683|ref|XP_008187132.1| (PREDICTED: DNA ligase 4 isoform X2 [Acyrthosiphon pisum]) HSP 1 Score: 108.997 bits (271), Expect = 6.989e-23 Identity = 68/230 (29.57%), Postives = 118/230 (51.30%), Query Frame = 0
Query: 68 ANSLPFAHFCDKCEKAAQAKSAQKKRSIFFDKELIYR----LQRASPGPV--SIFPILRFLLPETDPRQGQFKLRHRTMGDVIVKTLGLATKSKAALRIMNFSMPEHNGPRMGPNGRILNTLGDFGSTIEDVLVSRIRQTPSDLSLLEVNEWLDKLVSAPPRSHAKRKEREREEIFTQLSTLLNPREMKWLIRIILGDLKCGFKKDSVLKVFGQDGPGRLQRSYDLRKVC 291
N +PF FC CE AK+ +K + ++ I + ++++ + + +P+LR LLP +D ++G + ++ +G + VK L LA S A +++NF +P+ +G +T GDF T+ V+ SR S +S+ ++N+ LD++ HA + RE E+I + L+ E KWLIR++L D++ G +LK + D DL+KVC
Sbjct: 9 CNKIPFELFCRVCEDIYNAKNEKK---VLILEKFISKCRGSIEKSDNLNIEDTFYPVLRLLLPVSDKQRGAYGVKEAALGKLYVKILCLAKDSPDAQKLLNFRVPKVSG----------STAGDFAETLYWVIRSRFEDNGS-MSIADINQILDEI----AMKHATNESREVEQILQSMLLKLSANEQKWLIRLLLKDMRLGIAHTKILKAYHDDANDLYDVCNDLKKVC 220
BLAST of EWM25299.1 vs. NCBI_GenBank
Match: gi|328721431|ref|XP_001946729.2| (PREDICTED: DNA ligase 4 isoform X1 [Acyrthosiphon pisum]) HSP 1 Score: 108.997 bits (271), Expect = 7.125e-23 Identity = 68/230 (29.57%), Postives = 118/230 (51.30%), Query Frame = 0
Query: 68 ANSLPFAHFCDKCEKAAQAKSAQKKRSIFFDKELIYR----LQRASPGPV--SIFPILRFLLPETDPRQGQFKLRHRTMGDVIVKTLGLATKSKAALRIMNFSMPEHNGPRMGPNGRILNTLGDFGSTIEDVLVSRIRQTPSDLSLLEVNEWLDKLVSAPPRSHAKRKEREREEIFTQLSTLLNPREMKWLIRIILGDLKCGFKKDSVLKVFGQDGPGRLQRSYDLRKVC 291
N +PF FC CE AK+ +K + ++ I + ++++ + + +P+LR LLP +D ++G + ++ +G + VK L LA S A +++NF +P+ +G +T GDF T+ V+ SR S +S+ ++N+ LD++ HA + RE E+I + L+ E KWLIR++L D++ G +LK + D DL+KVC
Sbjct: 9 CNKIPFELFCRVCEDIYNAKNEKK---VLILEKFISKCRGSIEKSDNLNIEDTFYPVLRLLLPVSDKQRGAYGVKEAALGKLYVKILCLAKDSPDAQKLLNFRVPKVSG----------STAGDFAETLYWVIRSRFEDNGS-MSIADINQILDEI----AMKHATNESREVEQILQSMLLKLSANEQKWLIRLLLKDMRLGIAHTKILKAYHDDANDLYDVCNDLKKVC 220
BLAST of EWM25299.1 vs. NCBI_GenBank
Match: gi|985419921|ref|XP_015375459.1| (PREDICTED: DNA ligase 4 [Diuraphis noxia]) HSP 1 Score: 102.064 bits (253), Expect = 1.661e-20 Identity = 66/234 (28.21%), Postives = 114/234 (48.72%), Query Frame = 0
Query: 64 LEAAANSLPFAHFCDKCEKAAQAKSAQKKRSIFFDKELIYR----LQRASPGPV--SIFPILRFLLPETDPRQGQFKLRHRTMGDVIVKTLGLATKSKAALRIMNFSMPEHNGPRMGPNGRILNTLGDFGSTIEDVLVSRIRQTPSDLSLLEVNEWLDKLVSAPPRSHAKRKEREREEIFTQLSTLLNPREMKWLIRIILGDLKCGFKKDSVLKVFGQDGPGRLQRSYDLRKVC 291
+ A N +PF FC CE AK+ K + K+ I + ++++ + + +P LR L+P D ++G + ++ +G + VK L LA S A +++NF +P+ +G T GDF T+ V+ SR S +++ ++N+ LD++ HA + RE E+I + L+ E KWLIR++L +++ G +L + D DL KVC
Sbjct: 5 ISKACNKIPFELFCRVCEDIYNAKNENK---VLILKKFISKCRGSIEKSDNLNIEDTFYPALRLLIPVADKQRGAYGVKEAALGRLYVKILCLAKDSPDAQKLLNFRLPKFSGS----------TAGDFAETLFWVIRSRFEDNGS-VTIADINQLLDEI----AMKHAINESREVEQILQLMLLKLSANEQKWLIRLLLKEMRLGIAHTKILNAYHNDANDLYDVCNDLTKVC 220
BLAST of EWM25299.1 vs. NCBI_GenBank
Match: gi|1173941518|gb|OQR90666.1| (DNA ligase [Achlya hypogyna]) HSP 1 Score: 101.293 bits (251), Expect = 2.746e-20 Identity = 65/226 (28.76%), Postives = 105/226 (46.46%), Query Frame = 0
Query: 68 ANSLPFAHFCDKCEKAAQAKSAQKKRSIFFDKELIYRLQRASPGPVSIFPILRFLLPETDPRQGQFKLRHRTMGDVIVKTLGLATKSKAALRIMNFSMPEHNGPRMGPNGRILNTLGDFGSTIEDVLVSRIRQTPSDLSLLEVNEWLDKLVSAPPRSHAKRKEREREEIFTQLSTLLNPREMKWLIRIILGDLKCGFKKDSVLKVFGQDGPGRLQRSYDLRKVCAE 293
A LPFA FC ++ A K + F E RA+ G S++P LR LLP D R +KL+ + + + V+ LGL+ S ++++++ P R +GDF + +V+ R + + +L ++N LD L + P A ++ + Q T + E KWL+RI+L DLK G + + VL+ D + DL +VC E
Sbjct: 2 AAELPFASFCGLLDRVATTSKTDAKLKLIFSPEF-----RAACGTSSLYPFLRLLLPHLD-RDRTYKLKEKKLAALYVELLGLSPTSADGKKLLHWTDPTIVTSR---------AVGDFAMVLAEVMTYRSKARATTATLGDINTLLDALNAYDPT--AALPMASKKSVLLQFITQFSGEEQKWLVRIVLKDLKIGLRHERVLQFMHPDAVEMFNHTNDLERVCRE 210
BLAST of EWM25299.1 vs. NCBI_GenBank
Match: gi|675189609|ref|XP_008903689.1| (hypothetical protein PPTG_10159 [Phytophthora parasitica INRA-310] >gi|566026061|gb|ETI48972.1| hypothetical protein F443_07074 [Phytophthora parasitica P1569] >gi|567963318|gb|ETK88818.1| hypothetical protein L915_06974 [Phytophthora parasitica] >gi|567992013|gb|ETL42213.1| hypothetical protein L916_06924 [Phytophthora parasitica] >gi|568051678|gb|ETM48580.1| hypothetical protein L914_06890 [Phytophthora parasitica] >gi|568096460|gb|ETN11211.1| hypothetical protein PPTG_10159 [Phytophthora parasitica INRA-310] >gi|570953470|gb|ETP18727.1| hypothetical protein F441_07087 [Phytophthora parasitica CJ01A1]) HSP 1 Score: 100.138 bits (248), Expect = 8.152e-20 Identity = 70/231 (30.30%), Postives = 118/231 (51.08%), Query Frame = 0
Query: 65 EAAANSLPFAHFCDKCEKAAQAKSAQKKRSIFFDKELIYRLQRASPGPVSIFPILRFLLPETDPRQGQFKLRHRTMGDVIVKTLGLATKSKAALRIMNFSMPEHNGPRMGPNGRILNTLGDFGSTIEDVLVSRIRQTPSDL--SLLEVNEWLDKLVSAPPRSHAKRKEREREEIFTQLSTLLNPREMKWLIRIILGDLKCGFKKDSVLKVFGQDGPGRLQRSYDLRKVCAE 293
++AA L F C + + K + F L + G ++P++R +LP+ D R+ + L+ + + + + LGLA SK A ++ +F N P++ + ++GDF + + DV++ + +T S + +L +VNE LD+LV A S+A RK+ +F +L+T + E KW+IR+IL DLK G + + VLK D + DL KVC E
Sbjct: 7 QSAALGLSFTALCSVLKAVEATRKNDSKLDLLFSPHL-----HSQVGGGDLYPLIRLVLPQLD-RERTYMLKEKKIAKIYIDVLGLAPISKDAQKLEHF-----NDPKIVDS----KSVGDFAAVLFDVVLYQSARTKSKMQHTLKDVNELLDQLVLAD--SNAARKK-----VFMKLATEYSADEQKWIIRVILKDLKIGLRHERVLKFIHPDAMEMYNHTNDLHKVCRE 215
BLAST of EWM25299.1 vs. NCBI_GenBank
Match: gi|695375849|ref|XP_009515641.1| (hypothetical protein PHYSODRAFT_284249 [Phytophthora sojae] >gi|348688552|gb|EGZ28366.1| hypothetical protein PHYSODRAFT_284249 [Phytophthora sojae]) HSP 1 Score: 100.138 bits (248), Expect = 8.305e-20 Identity = 68/233 (29.18%), Postives = 116/233 (49.79%), Query Frame = 0
Query: 65 EAAANSLPFAHFCDKCEKAAQAKSAQKKRSIFFDKELIYRLQRASPGPVSIFPILRFLLPETDPRQGQFKLRHRTMGDVIVKTLGLATKSKAALRIMNFSMPEHNGPRMGPNGRILNT--LGDFGSTIEDVLVSRIRQTPS--DLSLLEVNEWLDKLVSAPPRSHAKRKEREREEIFTQLSTLLNPREMKWLIRIILGDLKCGFKKDSVLKVFGQDGPGRLQRSYDLRKVCAE 293
E AA L F C + ++ KK + F KEL R+ G ++P++R +LP+ D R+ + L+ + + + V+ LGL+ SK A ++ +F P +I+++ +GDF + + +V++ R + S +L +VN LD LV A + R+++ +L+T + E KW+IR++L DLK G + + VLK D + DL KVC E
Sbjct: 3 ETAALGLSFTALCSVLKAVEATRNNDKKLDLLFSKEL-----RSQVGGGDLYPLVRLVLPQLD-RERTYMLKEKKIAKIYVQVLGLSPASKDAQKLEHFHDP-----------KIVDSKSVGDFAAVLYEVMLYRSTASKSRQQHTLKDVNALLDSLVQADNNA-------TRKKVIMKLATEYSADEQKWIIRVVLKDLKIGLRHERVLKFIHPDAMEMYNHTNDLHKVCRE 211
BLAST of EWM25299.1 vs. NCBI_GenBank
Match: gi|568021295|gb|ETL95386.1| (hypothetical protein L917_06794 [Phytophthora parasitica]) HSP 1 Score: 100.138 bits (248), Expect = 8.465e-20 Identity = 70/231 (30.30%), Postives = 118/231 (51.08%), Query Frame = 0
Query: 65 EAAANSLPFAHFCDKCEKAAQAKSAQKKRSIFFDKELIYRLQRASPGPVSIFPILRFLLPETDPRQGQFKLRHRTMGDVIVKTLGLATKSKAALRIMNFSMPEHNGPRMGPNGRILNTLGDFGSTIEDVLVSRIRQTPSDL--SLLEVNEWLDKLVSAPPRSHAKRKEREREEIFTQLSTLLNPREMKWLIRIILGDLKCGFKKDSVLKVFGQDGPGRLQRSYDLRKVCAE 293
++AA L F C + + K + F L + G ++P++R +LP+ D R+ + L+ + + + + LGLA SK A ++ +F N P++ + ++GDF + + DV++ + +T S + +L +VNE LD+LV A S+A RK+ +F +L+T + E KW+IR+IL DLK G + + VLK D + DL KVC E
Sbjct: 7 QSAALGLSFTALCSVLKAVEATRKNDSKLDLLFSPHL-----HSQVGGGDLYPLIRLVLPQLD-RERTYMLKEKKIAKIYIDVLGLAPISKDAQKLEHF-----NDPKIVDS----KSVGDFAAVLFDVVLYQSARTKSKMQHTLKDVNELLDQLVLAD--SNAARKK-----VFMKLATEYSADEQKWIIRVILKDLKIGLRHERVLKFIHPDAMEMYNHTNDLHKVCRE 215
BLAST of EWM25299.1 vs. NCBI_GenBank
Match: gi|570329754|gb|ETO77702.1| (hypothetical protein F444_07143 [Phytophthora parasitica P1976]) HSP 1 Score: 99.7525 bits (247), Expect = 8.708e-20 Identity = 70/231 (30.30%), Postives = 118/231 (51.08%), Query Frame = 0
Query: 65 EAAANSLPFAHFCDKCEKAAQAKSAQKKRSIFFDKELIYRLQRASPGPVSIFPILRFLLPETDPRQGQFKLRHRTMGDVIVKTLGLATKSKAALRIMNFSMPEHNGPRMGPNGRILNTLGDFGSTIEDVLVSRIRQTPSDL--SLLEVNEWLDKLVSAPPRSHAKRKEREREEIFTQLSTLLNPREMKWLIRIILGDLKCGFKKDSVLKVFGQDGPGRLQRSYDLRKVCAE 293
++AA L F C + + K + F L + G ++P++R +LP+ D R+ + L+ + + + + LGLA SK A ++ +F N P++ + ++GDF + + DV++ + +T S + +L +VNE LD+LV A S+A RK+ +F +L+T + E KW+IR+IL DLK G + + VLK D + DL KVC E
Sbjct: 7 QSAALGLSFTALCSVLKAVEATRKNDSKLDLLFSPHL-----HSQVGGGDLYPLIRLVLPQLD-RERTYMLKEKKIAKIYIDVLGLAPISKDAQKLEHF-----NDPKIVDS----KSVGDFAAVLFDVVLYQSARTKSKMQHTLKDVNELLDQLVLAD--SNAARKK-----VFMKLATEYSADEQKWIIRVILKDLKIGLRHERVLKFIHPDAMEMYNHTNDLHKVCRE 215 The following BLAST results are available for this feature:
BLAST of EWM25299.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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