EWM25299.1, cds5373 (CDS) Nannochloropsis gaditana

Overview
NameEWM25299.1
Unique Namecds5373
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:872546..873048 -
Alignment locationCM002465.1:872170..872266 -
Alignment locationCM002465.1:871863..872018 -
Alignment locationCM002465.1:871526..871663 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25299.1
Productdna ligase
Orig transcript idgnl|cribi|Naga_100593g3.5929.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:872546..873048 -
CM002465.1supercontigCM002465.1:872170..872266 -
CM002465.1supercontigCM002465.1:871863..872018 -
CM002465.1supercontigCM002465.1:871526..871663 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
GO:0006259DNA metabolic process
GO:0051103DNA ligation involved in DNA repair
GO:0006310DNA recombination
GO:0006281DNA repair
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0000166nucleotide binding
GO:0005524ATP binding
GO:0003677DNA binding
GO:0003910DNA ligase (ATP) activity
Vocabulary: INTERPRO
TermDefinition
IPR029710LIG4
IPR012308DNA_ligase_ATP-dep_N
Homology
BLAST of EWM25299.1 vs. NCBI_GenBank
Match: gi|585107050|gb|EWM25299.1| (dna ligase [Nannochloropsis gaditana])

HSP 1 Score: 614.764 bits (1584), Expect = 0.000e+0
Identity = 297/297 (100.00%), Postives = 297/297 (100.00%), Query Frame = 0
Query:    1 MAGMWALDTMALPSVKDNMEDASRSSENLTGVDQHAAESYPTAPKATDPVDTRQDFTEEALVKLEAAANSLPFAHFCDKCEKAAQAKSAQKKRSIFFDKELIYRLQRASPGPVSIFPILRFLLPETDPRQGQFKLRHRTMGDVIVKTLGLATKSKAALRIMNFSMPEHNGPRMGPNGRILNTLGDFGSTIEDVLVSRIRQTPSDLSLLEVNEWLDKLVSAPPRSHAKRKEREREEIFTQLSTLLNPREMKWLIRIILGDLKCGFKKDSVLKVFGQDGPGRLQRSYDLRKVCAEYAVK 297
            MAGMWALDTMALPSVKDNMEDASRSSENLTGVDQHAAESYPTAPKATDPVDTRQDFTEEALVKLEAAANSLPFAHFCDKCEKAAQAKSAQKKRSIFFDKELIYRLQRASPGPVSIFPILRFLLPETDPRQGQFKLRHRTMGDVIVKTLGLATKSKAALRIMNFSMPEHNGPRMGPNGRILNTLGDFGSTIEDVLVSRIRQTPSDLSLLEVNEWLDKLVSAPPRSHAKRKEREREEIFTQLSTLLNPREMKWLIRIILGDLKCGFKKDSVLKVFGQDGPGRLQRSYDLRKVCAEYAVK
Sbjct:    1 MAGMWALDTMALPSVKDNMEDASRSSENLTGVDQHAAESYPTAPKATDPVDTRQDFTEEALVKLEAAANSLPFAHFCDKCEKAAQAKSAQKKRSIFFDKELIYRLQRASPGPVSIFPILRFLLPETDPRQGQFKLRHRTMGDVIVKTLGLATKSKAALRIMNFSMPEHNGPRMGPNGRILNTLGDFGSTIEDVLVSRIRQTPSDLSLLEVNEWLDKLVSAPPRSHAKRKEREREEIFTQLSTLLNPREMKWLIRIILGDLKCGFKKDSVLKVFGQDGPGRLQRSYDLRKVCAEYAVK 297          
BLAST of EWM25299.1 vs. NCBI_GenBank
Match: gi|553185516|ref|XP_005854259.1| (dna ligase 4-like protein [Nannochloropsis gaditana CCMP526] >gi|422294800|gb|EKU22100.1| dna ligase 4-like protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 411.764 bits (1057), Expect = 9.888e-144
Identity = 198/201 (98.51%), Postives = 199/201 (99.00%), Query Frame = 0
Query:    1 MAGMWALDTMALPSVKDNMEDASRSSENLTGVDQHAAESYPTAPKATDPVDTRQDFTEEALVKLEAAANSLPFAHFCDKCEKAAQAKSAQKKRSIFFDKELIYRLQRASPGPVSIFPILRFLLPETDPRQGQFKLRHRTMGDVIVKTLGLATKSKAALRIMNFSMPEHNGPRMGPNGRILNTLGDFGSTIEDVLVSRIRQT 201
            MAGMWALDTMALPSVKDNMEDASRSSENLTGVDQHAAESYPTAPKA DPVDTRQ+FTEEALVKLEAAANSLPFAHFCDKCEKAAQAKSAQKKRSIFFDKELIYRLQRASPGPVSIFPILRFLLPETDPRQGQFKLRHRTMGDVIVKTLGLATKSKAALRIMNFSMPEHNGPRMGPNGRILNTLGDFGSTIEDVLVSRIRQ 
Sbjct:    1 MAGMWALDTMALPSVKDNMEDASRSSENLTGVDQHAAESYPTAPKAIDPVDTRQNFTEEALVKLEAAANSLPFAHFCDKCEKAAQAKSAQKKRSIFFDKELIYRLQRASPGPVSIFPILRFLLPETDPRQGQFKLRHRTMGDVIVKTLGLATKSKAALRIMNFSMPEHNGPRMGPNGRILNTLGDFGSTIEDVLVSRIRQV 201          
BLAST of EWM25299.1 vs. NCBI_GenBank
Match: gi|641675683|ref|XP_008187132.1| (PREDICTED: DNA ligase 4 isoform X2 [Acyrthosiphon pisum])

HSP 1 Score: 108.997 bits (271), Expect = 6.989e-23
Identity = 68/230 (29.57%), Postives = 118/230 (51.30%), Query Frame = 0
Query:   68 ANSLPFAHFCDKCEKAAQAKSAQKKRSIFFDKELIYR----LQRASPGPV--SIFPILRFLLPETDPRQGQFKLRHRTMGDVIVKTLGLATKSKAALRIMNFSMPEHNGPRMGPNGRILNTLGDFGSTIEDVLVSRIRQTPSDLSLLEVNEWLDKLVSAPPRSHAKRKEREREEIFTQLSTLLNPREMKWLIRIILGDLKCGFKKDSVLKVFGQDGPGRLQRSYDLRKVC 291
             N +PF  FC  CE    AK+ +K   +   ++ I +    ++++    +  + +P+LR LLP +D ++G + ++   +G + VK L LA  S  A +++NF +P+ +G          +T GDF  T+  V+ SR     S +S+ ++N+ LD++       HA  + RE E+I   +   L+  E KWLIR++L D++ G     +LK +  D         DL+KVC
Sbjct:    9 CNKIPFELFCRVCEDIYNAKNEKK---VLILEKFISKCRGSIEKSDNLNIEDTFYPVLRLLLPVSDKQRGAYGVKEAALGKLYVKILCLAKDSPDAQKLLNFRVPKVSG----------STAGDFAETLYWVIRSRFEDNGS-MSIADINQILDEI----AMKHATNESREVEQILQSMLLKLSANEQKWLIRLLLKDMRLGIAHTKILKAYHDDANDLYDVCNDLKKVC 220          
BLAST of EWM25299.1 vs. NCBI_GenBank
Match: gi|328721431|ref|XP_001946729.2| (PREDICTED: DNA ligase 4 isoform X1 [Acyrthosiphon pisum])

HSP 1 Score: 108.997 bits (271), Expect = 7.125e-23
Identity = 68/230 (29.57%), Postives = 118/230 (51.30%), Query Frame = 0
Query:   68 ANSLPFAHFCDKCEKAAQAKSAQKKRSIFFDKELIYR----LQRASPGPV--SIFPILRFLLPETDPRQGQFKLRHRTMGDVIVKTLGLATKSKAALRIMNFSMPEHNGPRMGPNGRILNTLGDFGSTIEDVLVSRIRQTPSDLSLLEVNEWLDKLVSAPPRSHAKRKEREREEIFTQLSTLLNPREMKWLIRIILGDLKCGFKKDSVLKVFGQDGPGRLQRSYDLRKVC 291
             N +PF  FC  CE    AK+ +K   +   ++ I +    ++++    +  + +P+LR LLP +D ++G + ++   +G + VK L LA  S  A +++NF +P+ +G          +T GDF  T+  V+ SR     S +S+ ++N+ LD++       HA  + RE E+I   +   L+  E KWLIR++L D++ G     +LK +  D         DL+KVC
Sbjct:    9 CNKIPFELFCRVCEDIYNAKNEKK---VLILEKFISKCRGSIEKSDNLNIEDTFYPVLRLLLPVSDKQRGAYGVKEAALGKLYVKILCLAKDSPDAQKLLNFRVPKVSG----------STAGDFAETLYWVIRSRFEDNGS-MSIADINQILDEI----AMKHATNESREVEQILQSMLLKLSANEQKWLIRLLLKDMRLGIAHTKILKAYHDDANDLYDVCNDLKKVC 220          
BLAST of EWM25299.1 vs. NCBI_GenBank
Match: gi|985419921|ref|XP_015375459.1| (PREDICTED: DNA ligase 4 [Diuraphis noxia])

HSP 1 Score: 102.064 bits (253), Expect = 1.661e-20
Identity = 66/234 (28.21%), Postives = 114/234 (48.72%), Query Frame = 0
Query:   64 LEAAANSLPFAHFCDKCEKAAQAKSAQKKRSIFFDKELIYR----LQRASPGPV--SIFPILRFLLPETDPRQGQFKLRHRTMGDVIVKTLGLATKSKAALRIMNFSMPEHNGPRMGPNGRILNTLGDFGSTIEDVLVSRIRQTPSDLSLLEVNEWLDKLVSAPPRSHAKRKEREREEIFTQLSTLLNPREMKWLIRIILGDLKCGFKKDSVLKVFGQDGPGRLQRSYDLRKVC 291
            +  A N +PF  FC  CE    AK+  K   +   K+ I +    ++++    +  + +P LR L+P  D ++G + ++   +G + VK L LA  S  A +++NF +P+ +G           T GDF  T+  V+ SR     S +++ ++N+ LD++       HA  + RE E+I   +   L+  E KWLIR++L +++ G     +L  +  D         DL KVC
Sbjct:    5 ISKACNKIPFELFCRVCEDIYNAKNENK---VLILKKFISKCRGSIEKSDNLNIEDTFYPALRLLIPVADKQRGAYGVKEAALGRLYVKILCLAKDSPDAQKLLNFRLPKFSGS----------TAGDFAETLFWVIRSRFEDNGS-VTIADINQLLDEI----AMKHAINESREVEQILQLMLLKLSANEQKWLIRLLLKEMRLGIAHTKILNAYHNDANDLYDVCNDLTKVC 220          
BLAST of EWM25299.1 vs. NCBI_GenBank
Match: gi|1173941518|gb|OQR90666.1| (DNA ligase [Achlya hypogyna])

HSP 1 Score: 101.293 bits (251), Expect = 2.746e-20
Identity = 65/226 (28.76%), Postives = 105/226 (46.46%), Query Frame = 0
Query:   68 ANSLPFAHFCDKCEKAAQAKSAQKKRSIFFDKELIYRLQRASPGPVSIFPILRFLLPETDPRQGQFKLRHRTMGDVIVKTLGLATKSKAALRIMNFSMPEHNGPRMGPNGRILNTLGDFGSTIEDVLVSRIRQTPSDLSLLEVNEWLDKLVSAPPRSHAKRKEREREEIFTQLSTLLNPREMKWLIRIILGDLKCGFKKDSVLKVFGQDGPGRLQRSYDLRKVCAE 293
            A  LPFA FC   ++ A       K  + F  E      RA+ G  S++P LR LLP  D R   +KL+ + +  + V+ LGL+  S    ++++++ P     R          +GDF   + +V+  R +   +  +L ++N  LD L +  P   A      ++ +  Q  T  +  E KWL+RI+L DLK G + + VL+    D       + DL +VC E
Sbjct:    2 AAELPFASFCGLLDRVATTSKTDAKLKLIFSPEF-----RAACGTSSLYPFLRLLLPHLD-RDRTYKLKEKKLAALYVELLGLSPTSADGKKLLHWTDPTIVTSR---------AVGDFAMVLAEVMTYRSKARATTATLGDINTLLDALNAYDPT--AALPMASKKSVLLQFITQFSGEEQKWLVRIVLKDLKIGLRHERVLQFMHPDAVEMFNHTNDLERVCRE 210          
BLAST of EWM25299.1 vs. NCBI_GenBank
Match: gi|675189609|ref|XP_008903689.1| (hypothetical protein PPTG_10159 [Phytophthora parasitica INRA-310] >gi|566026061|gb|ETI48972.1| hypothetical protein F443_07074 [Phytophthora parasitica P1569] >gi|567963318|gb|ETK88818.1| hypothetical protein L915_06974 [Phytophthora parasitica] >gi|567992013|gb|ETL42213.1| hypothetical protein L916_06924 [Phytophthora parasitica] >gi|568051678|gb|ETM48580.1| hypothetical protein L914_06890 [Phytophthora parasitica] >gi|568096460|gb|ETN11211.1| hypothetical protein PPTG_10159 [Phytophthora parasitica INRA-310] >gi|570953470|gb|ETP18727.1| hypothetical protein F441_07087 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 100.138 bits (248), Expect = 8.152e-20
Identity = 70/231 (30.30%), Postives = 118/231 (51.08%), Query Frame = 0
Query:   65 EAAANSLPFAHFCDKCEKAAQAKSAQKKRSIFFDKELIYRLQRASPGPVSIFPILRFLLPETDPRQGQFKLRHRTMGDVIVKTLGLATKSKAALRIMNFSMPEHNGPRMGPNGRILNTLGDFGSTIEDVLVSRIRQTPSDL--SLLEVNEWLDKLVSAPPRSHAKRKEREREEIFTQLSTLLNPREMKWLIRIILGDLKCGFKKDSVLKVFGQDGPGRLQRSYDLRKVCAE 293
            ++AA  L F   C   +     +    K  + F   L      +  G   ++P++R +LP+ D R+  + L+ + +  + +  LGLA  SK A ++ +F     N P++  +     ++GDF + + DV++ +  +T S +  +L +VNE LD+LV A   S+A RK+     +F +L+T  +  E KW+IR+IL DLK G + + VLK    D       + DL KVC E
Sbjct:    7 QSAALGLSFTALCSVLKAVEATRKNDSKLDLLFSPHL-----HSQVGGGDLYPLIRLVLPQLD-RERTYMLKEKKIAKIYIDVLGLAPISKDAQKLEHF-----NDPKIVDS----KSVGDFAAVLFDVVLYQSARTKSKMQHTLKDVNELLDQLVLAD--SNAARKK-----VFMKLATEYSADEQKWIIRVILKDLKIGLRHERVLKFIHPDAMEMYNHTNDLHKVCRE 215          
BLAST of EWM25299.1 vs. NCBI_GenBank
Match: gi|695375849|ref|XP_009515641.1| (hypothetical protein PHYSODRAFT_284249 [Phytophthora sojae] >gi|348688552|gb|EGZ28366.1| hypothetical protein PHYSODRAFT_284249 [Phytophthora sojae])

HSP 1 Score: 100.138 bits (248), Expect = 8.305e-20
Identity = 68/233 (29.18%), Postives = 116/233 (49.79%), Query Frame = 0
Query:   65 EAAANSLPFAHFCDKCEKAAQAKSAQKKRSIFFDKELIYRLQRASPGPVSIFPILRFLLPETDPRQGQFKLRHRTMGDVIVKTLGLATKSKAALRIMNFSMPEHNGPRMGPNGRILNT--LGDFGSTIEDVLVSRIRQTPS--DLSLLEVNEWLDKLVSAPPRSHAKRKEREREEIFTQLSTLLNPREMKWLIRIILGDLKCGFKKDSVLKVFGQDGPGRLQRSYDLRKVCAE 293
            E AA  L F   C   +     ++  KK  + F KEL     R+  G   ++P++R +LP+ D R+  + L+ + +  + V+ LGL+  SK A ++ +F  P           +I+++  +GDF + + +V++ R   + S    +L +VN  LD LV A   +        R+++  +L+T  +  E KW+IR++L DLK G + + VLK    D       + DL KVC E
Sbjct:    3 ETAALGLSFTALCSVLKAVEATRNNDKKLDLLFSKEL-----RSQVGGGDLYPLVRLVLPQLD-RERTYMLKEKKIAKIYVQVLGLSPASKDAQKLEHFHDP-----------KIVDSKSVGDFAAVLYEVMLYRSTASKSRQQHTLKDVNALLDSLVQADNNA-------TRKKVIMKLATEYSADEQKWIIRVVLKDLKIGLRHERVLKFIHPDAMEMYNHTNDLHKVCRE 211          
BLAST of EWM25299.1 vs. NCBI_GenBank
Match: gi|568021295|gb|ETL95386.1| (hypothetical protein L917_06794 [Phytophthora parasitica])

HSP 1 Score: 100.138 bits (248), Expect = 8.465e-20
Identity = 70/231 (30.30%), Postives = 118/231 (51.08%), Query Frame = 0
Query:   65 EAAANSLPFAHFCDKCEKAAQAKSAQKKRSIFFDKELIYRLQRASPGPVSIFPILRFLLPETDPRQGQFKLRHRTMGDVIVKTLGLATKSKAALRIMNFSMPEHNGPRMGPNGRILNTLGDFGSTIEDVLVSRIRQTPSDL--SLLEVNEWLDKLVSAPPRSHAKRKEREREEIFTQLSTLLNPREMKWLIRIILGDLKCGFKKDSVLKVFGQDGPGRLQRSYDLRKVCAE 293
            ++AA  L F   C   +     +    K  + F   L      +  G   ++P++R +LP+ D R+  + L+ + +  + +  LGLA  SK A ++ +F     N P++  +     ++GDF + + DV++ +  +T S +  +L +VNE LD+LV A   S+A RK+     +F +L+T  +  E KW+IR+IL DLK G + + VLK    D       + DL KVC E
Sbjct:    7 QSAALGLSFTALCSVLKAVEATRKNDSKLDLLFSPHL-----HSQVGGGDLYPLIRLVLPQLD-RERTYMLKEKKIAKIYIDVLGLAPISKDAQKLEHF-----NDPKIVDS----KSVGDFAAVLFDVVLYQSARTKSKMQHTLKDVNELLDQLVLAD--SNAARKK-----VFMKLATEYSADEQKWIIRVILKDLKIGLRHERVLKFIHPDAMEMYNHTNDLHKVCRE 215          
BLAST of EWM25299.1 vs. NCBI_GenBank
Match: gi|570329754|gb|ETO77702.1| (hypothetical protein F444_07143 [Phytophthora parasitica P1976])

HSP 1 Score: 99.7525 bits (247), Expect = 8.708e-20
Identity = 70/231 (30.30%), Postives = 118/231 (51.08%), Query Frame = 0
Query:   65 EAAANSLPFAHFCDKCEKAAQAKSAQKKRSIFFDKELIYRLQRASPGPVSIFPILRFLLPETDPRQGQFKLRHRTMGDVIVKTLGLATKSKAALRIMNFSMPEHNGPRMGPNGRILNTLGDFGSTIEDVLVSRIRQTPSDL--SLLEVNEWLDKLVSAPPRSHAKRKEREREEIFTQLSTLLNPREMKWLIRIILGDLKCGFKKDSVLKVFGQDGPGRLQRSYDLRKVCAE 293
            ++AA  L F   C   +     +    K  + F   L      +  G   ++P++R +LP+ D R+  + L+ + +  + +  LGLA  SK A ++ +F     N P++  +     ++GDF + + DV++ +  +T S +  +L +VNE LD+LV A   S+A RK+     +F +L+T  +  E KW+IR+IL DLK G + + VLK    D       + DL KVC E
Sbjct:    7 QSAALGLSFTALCSVLKAVEATRKNDSKLDLLFSPHL-----HSQVGGGDLYPLIRLVLPQLD-RERTYMLKEKKIAKIYIDVLGLAPISKDAQKLEHF-----NDPKIVDS----KSVGDFAAVLFDVVLYQSARTKSKMQHTLKDVNELLDQLVLAD--SNAARKK-----VFMKLATEYSADEQKWIIRVILKDLKIGLRHERVLKFIHPDAMEMYNHTNDLHKVCRE 215          
The following BLAST results are available for this feature:
BLAST of EWM25299.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107050|gb|EWM25299.1|0.000e+0100.00dna ligase [Nannochloropsis gaditana][more]
gi|553185516|ref|XP_005854259.1|9.888e-14498.51dna ligase 4-like protein [Nannochloropsis gaditan... [more]
gi|641675683|ref|XP_008187132.1|6.989e-2329.57PREDICTED: DNA ligase 4 isoform X2 [Acyrthosiphon ... [more]
gi|328721431|ref|XP_001946729.2|7.125e-2329.57PREDICTED: DNA ligase 4 isoform X1 [Acyrthosiphon ... [more]
gi|985419921|ref|XP_015375459.1|1.661e-2028.21PREDICTED: DNA ligase 4 [Diuraphis noxia][more]
gi|1173941518|gb|OQR90666.1|2.746e-2028.76DNA ligase [Achlya hypogyna][more]
gi|675189609|ref|XP_008903689.1|8.152e-2030.30hypothetical protein PPTG_10159 [Phytophthora para... [more]
gi|695375849|ref|XP_009515641.1|8.305e-2029.18hypothetical protein PHYSODRAFT_284249 [Phytophtho... [more]
gi|568021295|gb|ETL95386.1|8.465e-2030.30hypothetical protein L917_06794 [Phytophthora para... [more]
gi|570329754|gb|ETO77702.1|8.708e-2030.30hypothetical protein F444_07143 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5386rna5386Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications