rna5385, rna5385 (mRNA) Nannochloropsis gaditana

Overview
Namerna5385
Unique Namerna5385
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1329
Alignment locationCM002465.1:867913..869721 -

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Properties
Property NameValue
ProductBRCT domain protein
Orig transcript idgnl|cribi|Naga_100964g2.7277.mrna
Orig protein idgnl|cribi|Naga_100964g2.7277
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:867913..869721 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100964g2gene5206Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25301.1cds5372Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5385rna5385-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5385 ID=rna5385|Name=rna5385|organism=Nannochloropsis gaditana|type=mRNA|length=1329bp
CATAACTACCGATGGGCAGGTATTTCTTTCGTCCAACATCTTGTTCGGTT
CAGACGGCTTGAAGAGAGCATGTGGAAATTATGCAGGTTGCATGACAGGA
TCATAGAGAATGATGGCATCGGTATAAGTTTGTTGTTTGGCGTGTAATCA
AGCCCAGCTTGTAGCGGTCTCATTCCCACTTCGTTTTTCATTACAAGGTA
ACATGAGCACTCACCACCATCTACAAAGCGGCCGTCGACGCCTCAGCAGT
CATCATTCTCTTGATGCGGCGGATGATTATGTAGCCGGGTATGCCATCTT
GGGGAGTGCGAGCATTGCACGTAAATTGTGGAAAGCGATGTTCATGAGCG
GCAACTCTCGTGTCGTCTGTGTTGCGTCACGAGACACCGCACGCGCGCAA
GCATTCATCGACGAATGCCAAGCATTGCTGCCTTTTCCTCAAGCACCTGA
AGCTGTGGAGGGTTATGAAGCGGCGTTGGCCAGGGACGACGTCCAATGCG
TGTATATCCCCTTACCGACCGCGCTTCGGAAGGAATGGGTGCTAAAAGCA
GCGGCGAGTGGCAAGCACGTACTGGTCGAAAAACCAGTGGGTCTGAACAC
GGAGGACGTACAAGAAATGATCCAGGCGTGCATCAAGCACAATGTCCACC
TGATGGACGGGGTCATGTTCATGCATTCGGCGCGCTTGCAGCTCCTGCAG
AAAACCTTGCCAAGTCTGGGGCCCCTGCGTCGTATCAACAGCGAATTCTG
CTTCAAAGCCAACGAGGCCTTCTTTCAGAGCAACATCCGATGCTCCAGTG
CCACGGAGCCGCTGGGTTGTCTAGGAGATCTGGGATGGTACAACATCCGC
TTGACCCTGTGGGCTATGAATTGGTACCTCCCTGTCCGTGCTCGTGGCTG
CGTGCTGAAAGAGAACGCCGACGGTGTCCCCTACGAGTTTTCGGGCGAGC
TGCTCTTCGAGTCTGGGTGCTCCGCCACTTTCTTCTGTTCCTTTCTCACG
CACGAGACGCAATTGGCGGTCCTGAACGGGGAGGAAGCCTCGGTGCAGTA
CTCGGACTTCGTCCTCCCGCTGCCAGGGCGCTACCTCTACTTCGACGTCA
ATCACCAGAGCTACCAGCAAGAAGGACTCGATCAGGTTGTGCACAGTTAC
AGCGAGCGCCACCACGTCCAAGAGGCTGGCTACGGCCACCCCTCGGCTCA
GGAAGCCTGCATGGTCCGGCACTTGTCAGATTTGTCCCGGGAGGGGGCGG
GGAGACCACCAAGTGGCCCGAGCAGATGCTGAAGACGCAGATGGTTCTGG
ACGCCGTCCTCCTCAGTGCCAGGGCCCGG
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protein sequence of rna5385

>rna5385-protein ID=rna5385-protein|Name=rna5385|organism=Nannochloropsis gaditana|type=polypeptide|length=488bp
MTVQELQALRERPGGLWGRQDGHAAKGGEKRGRGQGKEGGRKRRARWVPV
SAYATPGGIVEAEVKGSLFAGMKICLYGSEFTTRLPNARALVGLEEGGKE
GGKEGVRESGKEGWFSIEELHRVIVEQGGQASTNLMEIEKGPWDGGEGGE
EEAGGVEGGRGGDPAVTSEGNRHPNPPFVSPVYGMDIQRSPSPGISKSPP
QPQRYEQDVLLVPAGRPCLRTQAAIREARIDILVVDWLVECLGAGRRIEP
RYEHYVGMDRGTRRRMEGLVDGFGDPWIPREGSRLEEVFARMPSLSPSRG
PSLSGAWRCHVREGAWGDDEDAILRGVVPFYSPRQIIYADRYADCGRVLP
PVGEEDDEEATDDKEVGTREAKGRKRHALPFTTLDAAVILLRLHGAKISS
SLHANVTHVLVDREERRRYSLILARKRELRRGPHYACEKWVVDVEWVKAS
LKAGRLLDLQEGGIEECEEGCQRYVVSDQELKEGAGME
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mRNA from alignment at CM002465.1:867913..869721-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5385 ID=rna5385|Name=rna5385|organism=Nannochloropsis gaditana|type=mRNA|length=1809bp|location=Sequence derived from alignment at CM002465.1:867913..869721- (Nannochloropsis gaditana)
ATGACCGTGCAAGAACTACAGGCCTTGCGGGAGCGACCGGGCGGGTTGTG
GGGGAGACAGGACGGCCACGCGGCGAAGGGCGGGGAGAAACGGGGCCGGG
GCCAGGGGAAGGAGGGAGGGAGGAAGAGGAGGGCGAGGTGGGTGCCGGTG
TCGGCTTATGCGACCCCAGGGGGCATCGTGGAGGCGGAGGTGAAGGGGTC
TCTGTTTGCTGGTATGAAAATCTGTCTCTATGGAAGTGAATTCACGACGA
GGCTTCCCAATGCCCGGGCACTCGTGGGCTTAGAGGAGGGCGGGAAGGAG
GGCGGGAAGGAGGGCGTGAGGGAAAGCGGGAAGGAGGGTTGGTTTTCGAT
CGAGGAGCTGCATCGTGTGATCGTGGAGCAAGGGGGGCAAGCCAGCACGA
ATCTGATGGAAATAGAGAAGGGTCCGTGGGATGGTGGTGAGGGAGGGGAG
GAGGAAGCAGGTGGCGTGGAAGGAGGGCGAGGAGGCGACCCGGCGGTCAC
GTCCGAGGGCAATCGCCACCCCAACCCACCCTTTGTCTCCCCAGTATACG
GAATGGACATCCAAAGGTCCCCCTCGCCAGGCATAAGCAAGTCGCCGCCA
CAGCCCCAGCGGTACGAGCAAGACGTGTTGCTCGTCCCCGCCGGTCGCCC
GTGCCTGAGGACCCAAGCCGCGATTCGGGAGGCGCGCATCGACATCCTGG
TCGTGGACTGGCTGGTGGAGTGCCTTGGGGCCGGCCGGCGGATCGAACCT
CGGTACGAGCACTACGTGGGCATGGACCGTGGGACCCGGCGACGGATGGA
AGGTCTTGTGGACGGGTTTGGAGACCCCTGGATTCCGAGGGAGGGAAGCA
GGTTGGAGGAGGTCTTTGCCCGGATGCCCTCCCTCTCTCCCTCGCGTGGT
CCTTCCCTGTCTGGGGCCTGGCGGTGCCATGTACGCGAAGGGGCGTGGGG
GGACGACGAGGATGCCATCCTCCGGGGGGTAGTGCCCTTTTATTCGCCGC
GTCAAATCATTTATGCCGATCGCTACGCAGACTGCGGACGTGTGCTTCCG
CCAGTCGGGGAGGAAGACGACGAAGAAGCGACGGATGACAAGGAAGTAGG
GACAAGAGAAGCCAAAGGACGAAAAAGGCACGCTTTGCCCTTCACCACCT
TGGATGCGGCAGTAATCCTGCTCCGACTGCATGGCGCGAAAATCTCCTCC
TCTTTGCATGCCAACGTGACCCACGTCCTTGTGGACCGAGAGGAGCGACG
ACGGTATTCCTTGATTTTGGCGCGAAAACGAGAATTGCGTCGAGGGCCTC
ATTATGCCTGTGAGAAATGGGTGGTGGATGTCGAGTGGGTGAAGGCCAGC
CTGAAAGCAGGGCGCTTGCTCGATCTACAGGAGGGTGGGATAGAGGAATG
CGAGGAAGGGTGTCAGCGGTATGTGGTCTCAGACCAGGAATTAAAGGAAG
GAGCGGGCATGGAGTAGGGAGTGAGAACGTGGATGGAACAAACAGGAGAG
TTTGTTCAGAGGAGGTATTAGTGAGAATGTCGAGAGGAAAAGATGCGGTT
GGTGATTTGAGCAATAATTACGATTGTAGATTTTAATTTGAGGCGTCAGA
ATGTTAACACGATGGTGATAGCGCTTTAAAGGAATTTTAAAAATGTAAAA
ACGAAAGTAATTGTGTAACACACGATACCTGGACAGCCGTGACGCGGAGA
TCCCATGTGTACGACATAGGAGAGCAAACACCAATTAATTGAGTTCGAAA
AGTAAAAAAGGTTTCTTTCTCGTGATTAATCCTCTCTCTTAAAGCGGAGA
AGCGGGCCC
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Coding sequence (CDS) from alignment at CM002465.1:867913..869721-

>rna5385 ID=rna5385|Name=rna5385|organism=Nannochloropsis gaditana|type=CDS|length=1467bp|location=Sequence derived from alignment at CM002465.1:867913..869721- (Nannochloropsis gaditana)
ATGACCGTGCAAGAACTACAGGCCTTGCGGGAGCGACCGGGCGGGTTGTG
GGGGAGACAGGACGGCCACGCGGCGAAGGGCGGGGAGAAACGGGGCCGGG
GCCAGGGGAAGGAGGGAGGGAGGAAGAGGAGGGCGAGGTGGGTGCCGGTG
TCGGCTTATGCGACCCCAGGGGGCATCGTGGAGGCGGAGGTGAAGGGGTC
TCTGTTTGCTGGTATGAAAATCTGTCTCTATGGAAGTGAATTCACGACGA
GGCTTCCCAATGCCCGGGCACTCGTGGGCTTAGAGGAGGGCGGGAAGGAG
GGCGGGAAGGAGGGCGTGAGGGAAAGCGGGAAGGAGGGTTGGTTTTCGAT
CGAGGAGCTGCATCGTGTGATCGTGGAGCAAGGGGGGCAAGCCAGCACGA
ATCTGATGGAAATAGAGAAGGGTCCGTGGGATGGTGGTGAGGGAGGGGAG
GAGGAAGCAGGTGGCGTGGAAGGAGGGCGAGGAGGCGACCCGGCGGTCAC
GTCCGAGGGCAATCGCCACCCCAACCCACCCTTTGTCTCCCCAGTATACG
GAATGGACATCCAAAGGTCCCCCTCGCCAGGCATAAGCAAGTCGCCGCCA
CAGCCCCAGCGGTACGAGCAAGACGTGTTGCTCGTCCCCGCCGGTCGCCC
GTGCCTGAGGACCCAAGCCGCGATTCGGGAGGCGCGCATCGACATCCTGG
TCGTGGACTGGCTGGTGGAGTGCCTTGGGGCCGGCCGGCGGATCGAACCT
CGGTACGAGCACTACGTGGGCATGGACCGTGGGACCCGGCGACGGATGGA
AGGTCTTGTGGACGGGTTTGGAGACCCCTGGATTCCGAGGGAGGGAAGCA
GGTTGGAGGAGGTCTTTGCCCGGATGCCCTCCCTCTCTCCCTCGCGTGGT
CCTTCCCTGTCTGGGGCCTGGCGGTGCCATGTACGCGAAGGGGCGTGGGG
GGACGACGAGGATGCCATCCTCCGGGGGGTAGTGCCCTTTTATTCGCCGC
GTCAAATCATTTATGCCGATCGCTACGCAGACTGCGGACGTGTGCTTCCG
CCAGTCGGGGAGGAAGACGACGAAGAAGCGACGGATGACAAGGAAGTAGG
GACAAGAGAAGCCAAAGGACGAAAAAGGCACGCTTTGCCCTTCACCACCT
TGGATGCGGCAGTAATCCTGCTCCGACTGCATGGCGCGAAAATCTCCTCC
TCTTTGCATGCCAACGTGACCCACGTCCTTGTGGACCGAGAGGAGCGACG
ACGGTATTCCTTGATTTTGGCGCGAAAACGAGAATTGCGTCGAGGGCCTC
ATTATGCCTGTGAGAAATGGGTGGTGGATGTCGAGTGGGTGAAGGCCAGC
CTGAAAGCAGGGCGCTTGCTCGATCTACAGGAGGGTGGGATAGAGGAATG
CGAGGAAGGGTGTCAGCGGTATGTGGTCTCAGACCAGGAATTAAAGGAAG
GAGCGGGCATGGAGTAG
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Synonyms
Publications