EWM25301.1, cds5372 (CDS) Nannochloropsis gaditana

Overview
NameEWM25301.1
Unique Namecds5372
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:868255..869721 -

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Properties
Property NameValue
Protein idEWM25301.1
ProductBRCT domain protein
Orig transcript idgnl|cribi|Naga_100964g2.7277.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:868255..869721 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
GO:0006259DNA metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0003677DNA binding
GO:0000166nucleotide binding
Vocabulary: INTERPRO
TermDefinition
IPR001357BRCT_dom
Homology
BLAST of EWM25301.1 vs. NCBI_GenBank
Match: gi|585107053|gb|EWM25301.1| (BRCT domain protein [Nannochloropsis gaditana])

HSP 1 Score: 974.926 bits (2519), Expect = 0.000e+0
Identity = 488/488 (100.00%), Postives = 488/488 (100.00%), Query Frame = 0
Query:    1 MTVQELQALRERPGGLWGRQDGHAAKGGEKRGRGQGKEGGRKRRARWVPVSAYATPGGIVEAEVKGSLFAGMKICLYGSEFTTRLPNARALVGLEEGGKEGGKEGVRESGKEGWFSIEELHRVIVEQGGQASTNLMEIEKGPWDGGEGGEEEAGGVEGGRGGDPAVTSEGNRHPNPPFVSPVYGMDIQRSPSPGISKSPPQPQRYEQDVLLVPAGRPCLRTQAAIREARIDILVVDWLVECLGAGRRIEPRYEHYVGMDRGTRRRMEGLVDGFGDPWIPREGSRLEEVFARMPSLSPSRGPSLSGAWRCHVREGAWGDDEDAILRGVVPFYSPRQIIYADRYADCGRVLPPVGEEDDEEATDDKEVGTREAKGRKRHALPFTTLDAAVILLRLHGAKISSSLHANVTHVLVDREERRRYSLILARKRELRRGPHYACEKWVVDVEWVKASLKAGRLLDLQEGGIEECEEGCQRYVVSDQELKEGAGME 488
            MTVQELQALRERPGGLWGRQDGHAAKGGEKRGRGQGKEGGRKRRARWVPVSAYATPGGIVEAEVKGSLFAGMKICLYGSEFTTRLPNARALVGLEEGGKEGGKEGVRESGKEGWFSIEELHRVIVEQGGQASTNLMEIEKGPWDGGEGGEEEAGGVEGGRGGDPAVTSEGNRHPNPPFVSPVYGMDIQRSPSPGISKSPPQPQRYEQDVLLVPAGRPCLRTQAAIREARIDILVVDWLVECLGAGRRIEPRYEHYVGMDRGTRRRMEGLVDGFGDPWIPREGSRLEEVFARMPSLSPSRGPSLSGAWRCHVREGAWGDDEDAILRGVVPFYSPRQIIYADRYADCGRVLPPVGEEDDEEATDDKEVGTREAKGRKRHALPFTTLDAAVILLRLHGAKISSSLHANVTHVLVDREERRRYSLILARKRELRRGPHYACEKWVVDVEWVKASLKAGRLLDLQEGGIEECEEGCQRYVVSDQELKEGAGME
Sbjct:    1 MTVQELQALRERPGGLWGRQDGHAAKGGEKRGRGQGKEGGRKRRARWVPVSAYATPGGIVEAEVKGSLFAGMKICLYGSEFTTRLPNARALVGLEEGGKEGGKEGVRESGKEGWFSIEELHRVIVEQGGQASTNLMEIEKGPWDGGEGGEEEAGGVEGGRGGDPAVTSEGNRHPNPPFVSPVYGMDIQRSPSPGISKSPPQPQRYEQDVLLVPAGRPCLRTQAAIREARIDILVVDWLVECLGAGRRIEPRYEHYVGMDRGTRRRMEGLVDGFGDPWIPREGSRLEEVFARMPSLSPSRGPSLSGAWRCHVREGAWGDDEDAILRGVVPFYSPRQIIYADRYADCGRVLPPVGEEDDEEATDDKEVGTREAKGRKRHALPFTTLDAAVILLRLHGAKISSSLHANVTHVLVDREERRRYSLILARKRELRRGPHYACEKWVVDVEWVKASLKAGRLLDLQEGGIEECEEGCQRYVVSDQELKEGAGME 488          
BLAST of EWM25301.1 vs. NCBI_GenBank
Match: gi|553185520|ref|XP_005854260.1| (oxidoreductase domain protein, partial [Nannochloropsis gaditana CCMP526] >gi|422294801|gb|EKU22101.1| oxidoreductase domain protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 518.079 bits (1333), Expect = 1.062e-175
Identity = 261/289 (90.31%), Postives = 269/289 (93.08%), Query Frame = 0
Query:    1 MTVQELQALRERPGGLWGRQDGHAAKGGEKRGRGQGKEGGRKRRARWVPVSAYATPGGIVEAEVKGSLFAGMKICLYGSEFTTRLPNARALVGLEEGGKEGGKEGVRESGKEG--------WFSIEELHRVIVEQGGQASTNLMEIEKGPWDGGEGGEEEAGGVEGGRGGDPAVTSEGNRHPNPPFVSPVYGMDIQRSPSPGISKSPPQPQRYEQDVLLVPAGRPCLRTQAAIREARIDILVVDWLVECLGAGRRIEPRYEHYVGMDRGTRRRMEGLVDGFGDPWIPRE 281
            MTVQELQALRERPGGLWGRQDGHAAKGGEKRGRGQGKEGGRKRRARWVPVSAYA PGG+VEAEVKGSLFAGMKICLYGS+FTTRLPNARA+VGLEEGGKEGGKEGVRESGKEG        WFS+EELHRVIVEQGGQASTNLMEIEKGPWDGGEGGEEEAGGVEGGRGGDPAVTSEGNRHPNPPFVSPVYGMDIQRSPSPGISKSPPQP+RYEQDVLLVPAGRPCLRTQAA+REARIDILVVDW+VECLGAGRRIEPRYEHYVGM RGTRRRME      G   I R+
Sbjct:  104 MTVQELQALRERPGGLWGRQDGHAAKGGEKRGRGQGKEGGRKRRARWVPVSAYANPGGMVEAEVKGSLFAGMKICLYGSKFTTRLPNARAIVGLEEGGKEGGKEGVRESGKEGVRESGKEGWFSLEELHRVIVEQGGQASTNLMEIEKGPWDGGEGGEEEAGGVEGGRGGDPAVTSEGNRHPNPPFVSPVYGMDIQRSPSPGISKSPPQPRRYEQDVLLVPAGRPCLRTQAAMREARIDILVVDWMVECLGAGRRIEPRYEHYVGMARGTRRRMEAGYAILGSASIARK 392          
BLAST of EWM25301.1 vs. NCBI_GenBank
Match: gi|298714787|emb|CBJ25686.1| (DNA ligase, putative [Ectocarpus siliculosus])

HSP 1 Score: 71.2478 bits (173), Expect = 2.290e-9
Identity = 62/229 (27.07%), Postives = 99/229 (43.23%), Query Frame = 0
Query:  237 WLVECLGAGRRIEPRYEHYVGMDRGTRRRMEGLVDGFGDPWIP-REGSRLEEVFARMPSLSPSR------GPSLSGAWRCHVREGAWGDDEDA--ILRGVVPFYSPRQIIYADRYADCGRVLPPVGEEDDEEATDDKEVGTREAKGRKRHALPFTTLDAAVILLRLHGAKISSSLHANVTHVLVDREERRRYSLILARKRELRRGPHYACEKWVVDVEWVKASLKAGRL 456
            W++EC+       P  EH   +    R   E + D FGD +    + ++L ++   +P   P++      G S + +W   + E    DDEDA  ++ G    ++ +  +Y D + D G   PP G + +           RE         P  +L +    +R HG +++ SLHA VTHV+V  E+  R   I  R R+L           VV  EWV   ++ GRL
Sbjct:  843 WVLECIHQKAYKFPSMEHVRALSPEAREYFEAVKDDFGDDYTELTDAAQLSKLMLNIP---PTKRACQGGGKSATPSWLSPLLEL---DDEDAGTLMHGPDFLFAGKCHVYCDLFTDLGPAEPPGGADGNGSGDTTDPRPAREEN-------PTNSLGSTARAVRAHGGEVARSLHAGVTHVVVHPEDTTRIGDIKDRMRDLHHRDDRRFHIRVVKPEWVWECIERGRL 1058          
The following BLAST results are available for this feature:
BLAST of EWM25301.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585107053|gb|EWM25301.1|0.000e+0100.00BRCT domain protein [Nannochloropsis gaditana][more]
gi|553185520|ref|XP_005854260.1|1.062e-17590.31oxidoreductase domain protein, partial [Nannochlor... [more]
gi|298714787|emb|CBJ25686.1|2.290e-927.07DNA ligase, putative [Ectocarpus siliculosus][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5385rna5385Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications