EWM25301.1, cds5372 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25301.1 vs. NCBI_GenBank
Match: gi|585107053|gb|EWM25301.1| (BRCT domain protein [Nannochloropsis gaditana]) HSP 1 Score: 974.926 bits (2519), Expect = 0.000e+0 Identity = 488/488 (100.00%), Postives = 488/488 (100.00%), Query Frame = 0
Query: 1 MTVQELQALRERPGGLWGRQDGHAAKGGEKRGRGQGKEGGRKRRARWVPVSAYATPGGIVEAEVKGSLFAGMKICLYGSEFTTRLPNARALVGLEEGGKEGGKEGVRESGKEGWFSIEELHRVIVEQGGQASTNLMEIEKGPWDGGEGGEEEAGGVEGGRGGDPAVTSEGNRHPNPPFVSPVYGMDIQRSPSPGISKSPPQPQRYEQDVLLVPAGRPCLRTQAAIREARIDILVVDWLVECLGAGRRIEPRYEHYVGMDRGTRRRMEGLVDGFGDPWIPREGSRLEEVFARMPSLSPSRGPSLSGAWRCHVREGAWGDDEDAILRGVVPFYSPRQIIYADRYADCGRVLPPVGEEDDEEATDDKEVGTREAKGRKRHALPFTTLDAAVILLRLHGAKISSSLHANVTHVLVDREERRRYSLILARKRELRRGPHYACEKWVVDVEWVKASLKAGRLLDLQEGGIEECEEGCQRYVVSDQELKEGAGME 488
MTVQELQALRERPGGLWGRQDGHAAKGGEKRGRGQGKEGGRKRRARWVPVSAYATPGGIVEAEVKGSLFAGMKICLYGSEFTTRLPNARALVGLEEGGKEGGKEGVRESGKEGWFSIEELHRVIVEQGGQASTNLMEIEKGPWDGGEGGEEEAGGVEGGRGGDPAVTSEGNRHPNPPFVSPVYGMDIQRSPSPGISKSPPQPQRYEQDVLLVPAGRPCLRTQAAIREARIDILVVDWLVECLGAGRRIEPRYEHYVGMDRGTRRRMEGLVDGFGDPWIPREGSRLEEVFARMPSLSPSRGPSLSGAWRCHVREGAWGDDEDAILRGVVPFYSPRQIIYADRYADCGRVLPPVGEEDDEEATDDKEVGTREAKGRKRHALPFTTLDAAVILLRLHGAKISSSLHANVTHVLVDREERRRYSLILARKRELRRGPHYACEKWVVDVEWVKASLKAGRLLDLQEGGIEECEEGCQRYVVSDQELKEGAGME
Sbjct: 1 MTVQELQALRERPGGLWGRQDGHAAKGGEKRGRGQGKEGGRKRRARWVPVSAYATPGGIVEAEVKGSLFAGMKICLYGSEFTTRLPNARALVGLEEGGKEGGKEGVRESGKEGWFSIEELHRVIVEQGGQASTNLMEIEKGPWDGGEGGEEEAGGVEGGRGGDPAVTSEGNRHPNPPFVSPVYGMDIQRSPSPGISKSPPQPQRYEQDVLLVPAGRPCLRTQAAIREARIDILVVDWLVECLGAGRRIEPRYEHYVGMDRGTRRRMEGLVDGFGDPWIPREGSRLEEVFARMPSLSPSRGPSLSGAWRCHVREGAWGDDEDAILRGVVPFYSPRQIIYADRYADCGRVLPPVGEEDDEEATDDKEVGTREAKGRKRHALPFTTLDAAVILLRLHGAKISSSLHANVTHVLVDREERRRYSLILARKRELRRGPHYACEKWVVDVEWVKASLKAGRLLDLQEGGIEECEEGCQRYVVSDQELKEGAGME 488
BLAST of EWM25301.1 vs. NCBI_GenBank
Match: gi|553185520|ref|XP_005854260.1| (oxidoreductase domain protein, partial [Nannochloropsis gaditana CCMP526] >gi|422294801|gb|EKU22101.1| oxidoreductase domain protein, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 518.079 bits (1333), Expect = 1.062e-175 Identity = 261/289 (90.31%), Postives = 269/289 (93.08%), Query Frame = 0
Query: 1 MTVQELQALRERPGGLWGRQDGHAAKGGEKRGRGQGKEGGRKRRARWVPVSAYATPGGIVEAEVKGSLFAGMKICLYGSEFTTRLPNARALVGLEEGGKEGGKEGVRESGKEG--------WFSIEELHRVIVEQGGQASTNLMEIEKGPWDGGEGGEEEAGGVEGGRGGDPAVTSEGNRHPNPPFVSPVYGMDIQRSPSPGISKSPPQPQRYEQDVLLVPAGRPCLRTQAAIREARIDILVVDWLVECLGAGRRIEPRYEHYVGMDRGTRRRMEGLVDGFGDPWIPRE 281
MTVQELQALRERPGGLWGRQDGHAAKGGEKRGRGQGKEGGRKRRARWVPVSAYA PGG+VEAEVKGSLFAGMKICLYGS+FTTRLPNARA+VGLEEGGKEGGKEGVRESGKEG WFS+EELHRVIVEQGGQASTNLMEIEKGPWDGGEGGEEEAGGVEGGRGGDPAVTSEGNRHPNPPFVSPVYGMDIQRSPSPGISKSPPQP+RYEQDVLLVPAGRPCLRTQAA+REARIDILVVDW+VECLGAGRRIEPRYEHYVGM RGTRRRME G I R+
Sbjct: 104 MTVQELQALRERPGGLWGRQDGHAAKGGEKRGRGQGKEGGRKRRARWVPVSAYANPGGMVEAEVKGSLFAGMKICLYGSKFTTRLPNARAIVGLEEGGKEGGKEGVRESGKEGVRESGKEGWFSLEELHRVIVEQGGQASTNLMEIEKGPWDGGEGGEEEAGGVEGGRGGDPAVTSEGNRHPNPPFVSPVYGMDIQRSPSPGISKSPPQPRRYEQDVLLVPAGRPCLRTQAAMREARIDILVVDWMVECLGAGRRIEPRYEHYVGMARGTRRRMEAGYAILGSASIARK 392
BLAST of EWM25301.1 vs. NCBI_GenBank
Match: gi|298714787|emb|CBJ25686.1| (DNA ligase, putative [Ectocarpus siliculosus]) HSP 1 Score: 71.2478 bits (173), Expect = 2.290e-9 Identity = 62/229 (27.07%), Postives = 99/229 (43.23%), Query Frame = 0
Query: 237 WLVECLGAGRRIEPRYEHYVGMDRGTRRRMEGLVDGFGDPWIP-REGSRLEEVFARMPSLSPSR------GPSLSGAWRCHVREGAWGDDEDA--ILRGVVPFYSPRQIIYADRYADCGRVLPPVGEEDDEEATDDKEVGTREAKGRKRHALPFTTLDAAVILLRLHGAKISSSLHANVTHVLVDREERRRYSLILARKRELRRGPHYACEKWVVDVEWVKASLKAGRL 456
W++EC+ P EH + R E + D FGD + + ++L ++ +P P++ G S + +W + E DDEDA ++ G ++ + +Y D + D G PP G + + RE P +L + +R HG +++ SLHA VTHV+V E+ R I R R+L VV EWV ++ GRL
Sbjct: 843 WVLECIHQKAYKFPSMEHVRALSPEAREYFEAVKDDFGDDYTELTDAAQLSKLMLNIP---PTKRACQGGGKSATPSWLSPLLEL---DDEDAGTLMHGPDFLFAGKCHVYCDLFTDLGPAEPPGGADGNGSGDTTDPRPAREEN-------PTNSLGSTARAVRAHGGEVARSLHAGVTHVVVHPEDTTRIGDIKDRMRDLHHRDDRRFHIRVVKPEWVWECIERGRL 1058 The following BLAST results are available for this feature:
BLAST of EWM25301.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 3
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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