rna5383, rna5383 (mRNA) Nannochloropsis gaditana

Overview
Namerna5383
Unique Namerna5383
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length315
Alignment locationCM002465.1:855956..858674 +

Link to JBrowse

Properties
Property NameValue
Productwd sam and u-box domain-containing protein 1
Orig transcript idgnl|cribi|Naga_100135g2.5873.mrna
Orig protein idgnl|cribi|Naga_100135g2.5873
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:855956..858674 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100135g2gene5204Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5383rna5383-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25316.1cds5370Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5383 ID=rna5383|Name=rna5383|organism=Nannochloropsis gaditana|type=mRNA|length=315bp
ATGGTGGCCACTCTCCATTTTTTTTTGCGGTCGGGTAAAACGAGCGTGAG
CAGATGCCCCAATTATTCAAGTCGTTGCCGGAAACGAAAGCGGAGATGTA
ACGATCGTGGATTGGCCGTTTCTATCCATGTGTATCGTCGGAAAGAACAT
ATGGGGGCTCCTTCTAGCTACGTACACATGTCTACAGCATGGGACAGCCG
GAGGAAACGAGAAATGACAAACCCTTATATATTTGTATTGGACTATTTAA
ATAGGACTGATGGGGCATTATCGATGAAAGCTTCTATGTTATTTGTGGTT
TGTCGCCCTAAATGA
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protein sequence of rna5383

>rna5383-protein ID=rna5383-protein|Name=rna5383|organism=Nannochloropsis gaditana|type=polypeptide|length=316bp
MSNISSSSAWAAEAELAAHGGDISREAGIRPIDSINTISGPTITHYPPQS
LRCRRKSFAESLYRALLRLDPARKPRIQAVFRYFKNHKDLSQDQVHHSLI
AALGIHIVRKAWTEARADIHELLVVEPGDNNHTLENKSSLVAAAPPSEDP
PVEMGTVPAPPTSPQRQEEKKYTYHPGEERKEARDRKEKVLKFRFRHGLG
NEDGQLAHPPFNACITSMEDDVQLNVEDDLADKAPHAFVCPISLELMTRA
VVAGDGFAYQQEALDEWILQKRREHFPLHSPMTNAPMAPFYIPSFTLRSL
IGDYVEKVRTKRPRVD
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mRNA from alignment at CM002465.1:855956..858674+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5383 ID=rna5383|Name=rna5383|organism=Nannochloropsis gaditana|type=mRNA|length=2719bp|location=Sequence derived from alignment at CM002465.1:855956..858674+ (Nannochloropsis gaditana)
AGGGTTTGTCATTTCTCGTTTCCTCCGGCTGTCCCATGCTGTAGACATGT
GTACGTAGCTAGAAGGAGCCCCCATATGTTCTTTCCGACGATACACATGG
CTTTAATACTATCCCCATAGTGACAAAGCGTGGACACAGAAACACACACA
CATGCCACTCACATAGAAACGGCCAATCCACGATCGTTACATCTCCGCTT
TCGTTTCCGGCAACGACTTGAATAATTGGGGCATCTGCTCACGCTCGTTT
TACCCGACCGCAAAAAAAAATGGAGAGTGGCCACCATGCTTCAAGGAGAA
GCTCGGTATATGTCCATCCCGCGTGCCTGCAAAGACAAGGTGAAGATGCA
CCCGGCGACCATAGTGTGTCATGTACCTGTTTGACGTTTACTACAGGGTG
CCATGCTTTATTGGCTGGAATTGTGGACGCTTGTTTTCTGGAATACGAAT
ATTTCCCCGCCCTGTATTAATTCCCTTCAAGCAGCAAGCTATCTTAACAA
ACGTTGTGCGGCCAAAGGAAAATAGCCGCCGAGTCCATATGGGGTCTTCT
GACTTCAAAATCTCGCGCATTCCAACGTGTAAATGTGCGATCGAAAGAGA
AAGCATTGACACAGGGAATAAAAACTCCATCAATTGGAAAGATCTCTGGA
ATCGGTGGCACCCTGTTCCGTGAAGAAGCGAAGCTTTGCTTGCGGCCGTA
TGCTCATTACTCACCCACTGACTCGTTCACATAATAAAAGTCCCGCTAAA
ACCCTACAATTTCGCTTCCGACGCTCCATCATTCCATCATAGAAATTGAC
AGGTCTACTGAAATCATAGTTCCACCCGTTGGTGCGTGTCCTTCCTGCAA
TGTCAAACATCTCCTCAAGCAGCGCGTGGGCTGCGGAGGCCGAGCTCGCG
GCCCATGGTGGCGACATAAGTCGGGAGGCGGGCATACGACCTATAGATTC
CATCAATACCATATCTGGCCCTACAATCACACATTATCCACCTCAGTCGC
TACGTTGCCGCCGCAAGTCGTTCGCCGAGGTAAGGTTGAGGGGGCCCAGA
AGAGGCGGGCGATCCCTTGTGTATGTTCCGCCTGTTGGTGGTGTCGGGGA
TTGATCACGGAGAGGTTTGCGAAGTAGTCAAGGCATACATATGTGCGCGT
GGGAAAGACAACATTTTAATGTTTCTCGTGATATGGAGTAGTATGACAGT
GAGCTTATTGTCATGTGCACAACTCATGTATTTATCTCTTATGTTTAGGT
CTGTTGAAGCTTGCTTCGAGTTTACCCCCCCCCTACCAGAAAACCCTTAC
GAAATACCATGCgagatttttttcctcatccATCCCTTGCCCAACTCGTT
TCTCAATTAGTCTTTATATCGTGCACTCCTTCGCCTGGACCCCGCCCGAA
AGCCACGAATCCAAGCTGTCTTCCGCTACTTCAAGAACCACAAAGATCTT
TCCCAAGATCAAGTCCATCATTCACTCATCGCTGCACTGGGTATTCATAT
CGTGCGCAAAGCTTGGACCGAGGCCCGGGCTGATATTCACGAGCTTCTCG
TTGTTGAACCTGGGGACAACAATCATACCTTAGAGAATAAGAgctccctc
gtcgccgcAGCGCCCCCGTCCGAGGACCCTCCGGTTGAAATGGGAACTGT
CCCTGCTCCACCGACCTCCCCTCAGagacaggaagagaagaaatacACCT
ATCATcctggagaggagaggaaggaagcaagagacagaaaggaaaaagtg
cTCAAGTTTCGCTTTCGTCACGGCCTGGGTAACGAGGACGGCCAGCTTGC
GCATCCACCATTCAACGCCTGTATCACATCCATGGAGGATGATGTCCAGC
TAAACGTTGAGGATGATCTGGCCGACAAGGCGCCACATGCCTTCGTTTGT
CCCATTTCACTAGAGCTGATGACACGCGCGGTGGTTGCCGGCGACGGCTT
TGCCTATCAACAGGAGGCCTTGGATGAATGGATTCTGCAGAAACGTCGAG
AGCATTTCCCACTTCATTCACCCATGACTAATGCACCGATGGCACCTTTT
TATATTCCATCATTTACACTCCGGAGTCTCATTGGGGACTACGTAGAAAA
AGTGCGGACGAAAAGGCCGCGAGTAGATTAAGACGCGAGGGAGCTTAAGC
TCAAATTGATGGGAGGTTGGACGTCGGATATGGCACAAGGAATGAAAACA
TGGAATATGAAGAGAGGAGATTGCCACCAAAACAGTGAGAAAGGTCTGCT
TCCTATTTTGCACAGACCATGAGTGAATTGGACAACCTACGACAGCAACG
AATAGTCATCTTATAGACATACATCATAACGATCTTTCCTAATGGCTCTT
GCTTTACAGCAATGATTGTGGTGTATATGGTTTGAAGACAGCGAAAAGGC
TCACAAAGGGTGTCGACTTTCTGCAAGCGTCGGGAGATCTGTCTTGACAA
GGCAAGTCCATATATGCAAGATATTTTATAGATGAATGTATAGCCCCTTT
CAAAGGGCAGGACGCTTTTAAAAGATTTCCTTTCAAAGAGCGGAGAGATT
TTAGAAAGAATGAAAAGATGACGTGATAGATTGACAAGGCGATATACCAA
TGAGATGCACAGTCTTTAAGACTTGAAACACGAGAAGATATCGCGAATAA
ATGGCGACATCACAAAGCGAAAAAAATTCTTTTGTACACTTTTCATCATG
GAAACTTCTTAAAAATCCC
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Coding sequence (CDS) from alignment at CM002465.1:855956..858674+

>rna5383 ID=rna5383|Name=rna5383|organism=Nannochloropsis gaditana|type=CDS|length=1902bp|location=Sequence derived from alignment at CM002465.1:855956..858674+ (Nannochloropsis gaditana)
ATGTCAAACATCTCCTCAAGCAGCGCGTGGGCTGCGGAGGCCGAGCTCGC
GGCCCATGGTGGCGACATAAGTCGGGAGGCGGGCATACGACCTATAGATT
CCATCAATACCATATCTGGCCCTACAATCACACATTATCCACCTCAGTCG
CTACGTTGCCGCCGCAAGTCGTTCGCCGAGTCTTTATATCGTGCACTCCT
TCGCCTGGACCCCGCCCGAAAGCCACGAATCCAAGCTGTCTTCCGCTACT
TCAAGAACCACAAAGATCTTTCCCAAGATCAAGTCCATCATTCACTCATC
GCTGCACTGGGTATTCATATCGTGCGCAAAGCTTGGACCGAGGCCCGGGC
TGATATTCACGAGCTTCTCGTTGTTGAACCTGGGGACAACAATCATACCT
TAGAGAATAAGAgctccctcgtcgccgcAGCGCCCCCGTCCGAGGACCCT
CCGGTTGAAATGGGAACTGTCCCTGCTCCACCGACCTCCCCTCAGagaca
ggaagagaagaaatacACCTATCATcctggagaggagaggaaggaagcaa
gagacagaaaggaaaaagtgcTCAAGTTTCGCTTTCGTCACGGCCTGGGT
AACGAGGACGGCCAGCTTGCGCATCCACCATTCAACGCCTGTATCACATC
CATGGAGGATGATGTCCAGCTAAACGTTGAGGATGATCTGGCCGACAAGG
CGCCACATGCCTTCGTTTGTCCCATTTCACTAGAGCTGATGACACGCGCG
GTGGTTGCCGGCGACGGCTTTGCCTATCAACAGGAGGCCTTGGATGAATG
GATTCTGCAGAAACGTCGAGAGCATTTCCCACTTCATTCACCCATGACTA
ATGCACCGATGGCACCTTTTTATATTCCATCATTTACACTCCGGAGTCTC
ATTGGGGACTACGTAGAAAAAGTGCGGACGAAAAGGCCGCGAGTAGATTA
AATGTCAAACATCTCCTCAAGCAGCGCGTGGGCTGCGGAGGCCGAGCTCG
CGGCCCATGGTGGCGACATAAGTCGGGAGGCGGGCATACGACCTATAGAT
TCCATCAATACCATATCTGGCCCTACAATCACACATTATCCACCTCAGTC
GCTACGTTGCCGCCGCAAGTCGTTCGCCGAGTCTTTATATCGTGCACTCC
TTCGCCTGGACCCCGCCCGAAAGCCACGAATCCAAGCTGTCTTCCGCTAC
TTCAAGAACCACAAAGATCTTTCCCAAGATCAAGTCCATCATTCACTCAT
CGCTGCACTGGGTATTCATATCGTGCGCAAAGCTTGGACCGAGGCCCGGG
CTGATATTCACGAGCTTCTCGTTGTTGAACCTGGGGACAACAATCATACC
TTAGAGAATAAGAgctccctcgtcgccgcAGCGCCCCCGTCCGAGGACCC
TCCGGTTGAAATGGGAACTGTCCCTGCTCCACCGACCTCCCCTCAGagac
aggaagagaagaaatacACCTATCATcctggagaggagaggaaggaagca
agagacagaaaggaaaaagtgcTCAAGTTTCGCTTTCGTCACGGCCTGGG
TAACGAGGACGGCCAGCTTGCGCATCCACCATTCAACGCCTGTATCACAT
CCATGGAGGATGATGTCCAGCTAAACGTTGAGGATGATCTGGCCGACAAG
GCGCCACATGCCTTCGTTTGTCCCATTTCACTAGAGCTGATGACACGCGC
GGTGGTTGCCGGCGACGGCTTTGCCTATCAACAGGAGGCCTTGGATGAAT
GGATTCTGCAGAAACGTCGAGAGCATTTCCCACTTCATTCACCCATGACT
AATGCACCGATGGCACCTTTTTATATTCCATCATTTACACTCCGGAGTCT
CATTGGGGACTACGTAGAAAAAGTGCGGACGAAAAGGCCGCGAGTAGATT
AA
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Synonyms
Publications