EWM25316.1, cds5370 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25316.1 vs. NCBI_GenBank
Match: gi|585107071|gb|EWM25316.1| (wd sam and u-box domain-containing protein 1 [Nannochloropsis gaditana]) HSP 1 Score: 655.981 bits (1691), Expect = 0.000e+0 Identity = 316/316 (100.00%), Postives = 316/316 (100.00%), Query Frame = 0 Query: 1 MSNISSSSAWAAEAELAAHGGDISREAGIRPIDSINTISGPTITHYPPQSLRCRRKSFAESLYRALLRLDPARKPRIQAVFRYFKNHKDLSQDQVHHSLIAALGIHIVRKAWTEARADIHELLVVEPGDNNHTLENKSSLVAAAPPSEDPPVEMGTVPAPPTSPQRQEEKKYTYHPGEERKEARDRKEKVLKFRFRHGLGNEDGQLAHPPFNACITSMEDDVQLNVEDDLADKAPHAFVCPISLELMTRAVVAGDGFAYQQEALDEWILQKRREHFPLHSPMTNAPMAPFYIPSFTLRSLIGDYVEKVRTKRPRVD 316 MSNISSSSAWAAEAELAAHGGDISREAGIRPIDSINTISGPTITHYPPQSLRCRRKSFAESLYRALLRLDPARKPRIQAVFRYFKNHKDLSQDQVHHSLIAALGIHIVRKAWTEARADIHELLVVEPGDNNHTLENKSSLVAAAPPSEDPPVEMGTVPAPPTSPQRQEEKKYTYHPGEERKEARDRKEKVLKFRFRHGLGNEDGQLAHPPFNACITSMEDDVQLNVEDDLADKAPHAFVCPISLELMTRAVVAGDGFAYQQEALDEWILQKRREHFPLHSPMTNAPMAPFYIPSFTLRSLIGDYVEKVRTKRPRVD Sbjct: 1 MSNISSSSAWAAEAELAAHGGDISREAGIRPIDSINTISGPTITHYPPQSLRCRRKSFAESLYRALLRLDPARKPRIQAVFRYFKNHKDLSQDQVHHSLIAALGIHIVRKAWTEARADIHELLVVEPGDNNHTLENKSSLVAAAPPSEDPPVEMGTVPAPPTSPQRQEEKKYTYHPGEERKEARDRKEKVLKFRFRHGLGNEDGQLAHPPFNACITSMEDDVQLNVEDDLADKAPHAFVCPISLELMTRAVVAGDGFAYQQEALDEWILQKRREHFPLHSPMTNAPMAPFYIPSFTLRSLIGDYVEKVRTKRPRVD 316
BLAST of EWM25316.1 vs. NCBI_GenBank
Match: gi|553181505|ref|XP_005853577.1| (wd sam and u-box domain-containing protein 1 [Nannochloropsis gaditana CCMP526] >gi|422295482|gb|EKU22781.1| wd sam and u-box domain-containing protein 1 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 649.818 bits (1675), Expect = 0.000e+0 Identity = 314/316 (99.37%), Postives = 314/316 (99.37%), Query Frame = 0 Query: 1 MSNISSSSAWAAEAELAAHGGDISREAGIRPIDSINTISGPTITHYPPQSLRCRRKSFAESLYRALLRLDPARKPRIQAVFRYFKNHKDLSQDQVHHSLIAALGIHIVRKAWTEARADIHELLVVEPGDNNHTLENKSSLVAAAPPSEDPPVEMGTVPAPPTSPQRQEEKKYTYHPGEERKEARDRKEKVLKFRFRHGLGNEDGQLAHPPFNACITSMEDDVQLNVEDDLADKAPHAFVCPISLELMTRAVVAGDGFAYQQEALDEWILQKRREHFPLHSPMTNAPMAPFYIPSFTLRSLIGDYVEKVRTKRPRVD 316 MSNISSSSAWAAEAELAAH GDISREAGIRPIDSINTISGPTITHYPPQSLRCRRKSFAESLYRALLRLDPARKPRIQAVFRYFKNHKDLSQDQVHHSLIAALGIHIVRKAWTEARADIHELLVVEPGDNNHTLENKSSLVAAAPPSEDPPVEMGTVPAPPTSPQRQEEKKYTYHPGEERKEARDRKEKVLKFRFRHGLGNEDGQLAHPPFNACITSMEDDVQLNVEDDLADKAPHAFVCPISLELMTRAVVAGDGFAYQQEALDEWILQKRREH PLHSPMTNAPMAPFYIPSFTLRSLIGDYVEKVRTKRPRVD Sbjct: 1 MSNISSSSAWAAEAELAAHDGDISREAGIRPIDSINTISGPTITHYPPQSLRCRRKSFAESLYRALLRLDPARKPRIQAVFRYFKNHKDLSQDQVHHSLIAALGIHIVRKAWTEARADIHELLVVEPGDNNHTLENKSSLVAAAPPSEDPPVEMGTVPAPPTSPQRQEEKKYTYHPGEERKEARDRKEKVLKFRFRHGLGNEDGQLAHPPFNACITSMEDDVQLNVEDDLADKAPHAFVCPISLELMTRAVVAGDGFAYQQEALDEWILQKRREHSPLHSPMTNAPMAPFYIPSFTLRSLIGDYVEKVRTKRPRVD 316
BLAST of EWM25316.1 vs. NCBI_GenBank
Match: gi|195999252|ref|XP_002109494.1| (hypothetical protein TRIADDRAFT_53592 [Trichoplax adhaerens] >gi|190587618|gb|EDV27660.1| hypothetical protein TRIADDRAFT_53592 [Trichoplax adhaerens]) HSP 1 Score: 75.485 bits (184), Expect = 1.387e-11 Identity = 39/86 (45.35%), Postives = 57/86 (66.28%), Query Frame = 0 Query: 226 VEDDLADKAPHAFVCPISLELMTRAVVAGDGFAYQQEALDEWILQKRREHFPLHSPMTNAPM-APFYIPSFTLRSLIGDYVEKVRT 310 ++D L + P F+CPIS E+MT VVA DG++YQ++A++ W+ R L SPMTNAP+ A IP+ TL+SLI Y++ R+ Sbjct: 455 LKDRLDNSIPDEFLCPISREVMTDPVVASDGYSYQRQAIESWLNGGNR----LTSPMTNAPLNASLLIPNKTLKSLIQKYLDGDRS 536
BLAST of EWM25316.1 vs. NCBI_GenBank
Match: gi|942157038|ref|XP_005998025.2| (PREDICTED: WD repeat, SAM and U-box domain-containing protein 1 [Latimeria chalumnae]) HSP 1 Score: 68.5514 bits (166), Expect = 2.779e-9 Identity = 35/90 (38.89%), Postives = 54/90 (60.00%), Query Frame = 0 Query: 223 QLNVEDDLADKAPHAFVCPISLELMTRAVVAGDGFAYQQEALDEWILQKRREHFPLHSPMTNAPM-APFYIPSFTLRSLIGDYVEKVRTK 311 +L V++ D P F+CPI+ ELM V+A DG++Y++ A++ WI K+R SPMTN P+ + P+ TL+ I +VE +TK Sbjct: 393 ELRVQESATDNIPDEFLCPITRELMKDPVIASDGYSYERTAIENWINTKKRS-----SPMTNVPLQSSLLTPNRTLKMAIDRWVESQQTK 477
BLAST of EWM25316.1 vs. NCBI_GenBank
Match: gi|700354764|ref|XP_009921673.1| (PREDICTED: WD repeat, SAM and U-box domain-containing protein 1-like [Haliaeetus albicilla]) HSP 1 Score: 63.1586 bits (152), Expect = 5.337e-9 Identity = 30/73 (41.10%), Postives = 46/73 (63.01%), Query Frame = 0 Query: 235 PHAFVCPISLELMTRAVVAGDGFAYQQEALDEWILQKRREHFPLHSPMTNAPMAPFYI-PSFTLRSLIGDYVE 306 P F+CPI+ ELM V+A DG++Y++EA++ WI +RR SPMTN P+ + P+ TL+ I ++E Sbjct: 41 PDEFLCPITRELMKDPVIAADGYSYEKEAMENWISTRRR-----SSPMTNLPLPSLMLTPNRTLKMAISRWLE 108
BLAST of EWM25316.1 vs. NCBI_GenBank
Match: gi|149047776|gb|EDM00392.1| (WD repeat, SAM and U-box domain containing 1, isoform CRA_b [Rattus norvegicus]) HSP 1 Score: 62.003 bits (149), Expect = 6.446e-9 Identity = 30/80 (37.50%), Postives = 49/80 (61.25%), Query Frame = 0 Query: 228 DDLADKAPHAFVCPISLELMTRAVVAGDGFAYQQEALDEWILQKRREHFPLHSPMTNAPMAPFYI-PSFTLRSLIGDYVE 306 + L+ P F+CPI+ ELM V+A DG++Y++EA++ WI +K+R SPMTN + + P+ TL+ I ++E Sbjct: 2 ESLSSGIPDEFICPITRELMKDPVIASDGYSYEREAMESWIHKKKRT-----SPMTNLALPSLVLTPNRTLKMAINRWLE 76
BLAST of EWM25316.1 vs. NCBI_GenBank
Match: gi|1113805345|ref|XP_019335799.1| (PREDICTED: WD repeat, SAM and U-box domain-containing protein 1 isoform X2 [Alligator mississippiensis]) HSP 1 Score: 65.4698 bits (158), Expect = 7.898e-9 Identity = 31/80 (38.75%), Postives = 49/80 (61.25%), Query Frame = 0 Query: 228 DDLADKAPHAFVCPISLELMTRAVVAGDGFAYQQEALDEWILQKRREHFPLHSPMTNAPMAPFYI-PSFTLRSLIGDYVE 306 D ++ P F+CPI+ ELM ++A DG++Y++EA++ WI KRR SPMTN P+ + P+ TL+ I ++E Sbjct: 150 DSVSVGIPDEFLCPITRELMKDPIIASDGYSYEKEAMENWISNKRR-----SSPMTNLPLQSLVLTPNRTLKMAISRWLE 224
BLAST of EWM25316.1 vs. NCBI_GenBank
Match: gi|1117377792|ref|XP_019377899.1| (PREDICTED: WD repeat, SAM and U-box domain-containing protein 1 isoform X2 [Gavialis gangeticus]) HSP 1 Score: 65.4698 bits (158), Expect = 8.696e-9 Identity = 31/80 (38.75%), Postives = 49/80 (61.25%), Query Frame = 0 Query: 228 DDLADKAPHAFVCPISLELMTRAVVAGDGFAYQQEALDEWILQKRREHFPLHSPMTNAPMAPFYI-PSFTLRSLIGDYVE 306 D ++ P F+CPI+ ELM ++A DG++Y++EA++ WI KRR SPMTN P+ + P+ TL+ I ++E Sbjct: 150 DSVSVGIPDEFLCPITRELMKDPIIASDGYSYEKEAMENWISNKRR-----SSPMTNLPLQSLVLTPNRTLKMAISRWLE 224
BLAST of EWM25316.1 vs. NCBI_GenBank
Match: gi|729731050|ref|XP_010561373.1| (PREDICTED: WD repeat, SAM and U-box domain-containing protein 1 [Haliaeetus leucocephalus]) HSP 1 Score: 62.7734 bits (151), Expect = 9.732e-9 Identity = 30/73 (41.10%), Postives = 46/73 (63.01%), Query Frame = 0 Query: 235 PHAFVCPISLELMTRAVVAGDGFAYQQEALDEWILQKRREHFPLHSPMTNAPMAPFYI-PSFTLRSLIGDYVE 306 P F+CPI+ ELM V+A DG++Y++EA++ WI +RR SPMTN P+ + P+ TL+ I ++E Sbjct: 50 PDEFLCPITRELMKDPVIAADGYSYEKEAMENWISTRRR-----SSPMTNLPLPSLMLTPNRTLKMAISRWLE 117
BLAST of EWM25316.1 vs. NCBI_GenBank
Match: gi|944215090|gb|KQK81484.1| (bromodomain adjacent to zinc finger domain protein 2B isoform X1 [Amazona aestiva]) HSP 1 Score: 67.3958 bits (163), Expect = 9.913e-9 Identity = 32/73 (43.84%), Postives = 47/73 (64.38%), Query Frame = 0 Query: 235 PHAFVCPISLELMTRAVVAGDGFAYQQEALDEWILQKRREHFPLHSPMTNAPM-APFYIPSFTLRSLIGDYVE 306 P F+CPI+ ELM V+A DG++Y++EA++ WI KRR SPMTN P+ +P P+ TL+ I ++E Sbjct: 2540 PDEFLCPITRELMKDPVIAADGYSYEKEAIENWINSKRRS-----SPMTNLPLTSPMLTPNRTLKMAISRWLE 2607 The following BLAST results are available for this feature:
BLAST of EWM25316.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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