EWM25316.1, cds5370 (CDS) Nannochloropsis gaditana

Overview
NameEWM25316.1
Unique Namecds5370
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:856805..856984 +
Alignment locationCM002465.1:857316..858086 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25316.1
Productwd sam and u-box domain-containing protein 1
Orig transcript idgnl|cribi|Naga_100135g2.5873.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:856805..856984 +
CM002465.1supercontigCM002465.1:857316..858086 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0004842ubiquitin-protein transferase activity
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
GO:0016567protein ubiquitination
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR003613Ubox_domain
Homology
BLAST of EWM25316.1 vs. NCBI_GenBank
Match: gi|585107071|gb|EWM25316.1| (wd sam and u-box domain-containing protein 1 [Nannochloropsis gaditana])

HSP 1 Score: 655.981 bits (1691), Expect = 0.000e+0
Identity = 316/316 (100.00%), Postives = 316/316 (100.00%), Query Frame = 0
Query:    1 MSNISSSSAWAAEAELAAHGGDISREAGIRPIDSINTISGPTITHYPPQSLRCRRKSFAESLYRALLRLDPARKPRIQAVFRYFKNHKDLSQDQVHHSLIAALGIHIVRKAWTEARADIHELLVVEPGDNNHTLENKSSLVAAAPPSEDPPVEMGTVPAPPTSPQRQEEKKYTYHPGEERKEARDRKEKVLKFRFRHGLGNEDGQLAHPPFNACITSMEDDVQLNVEDDLADKAPHAFVCPISLELMTRAVVAGDGFAYQQEALDEWILQKRREHFPLHSPMTNAPMAPFYIPSFTLRSLIGDYVEKVRTKRPRVD 316
            MSNISSSSAWAAEAELAAHGGDISREAGIRPIDSINTISGPTITHYPPQSLRCRRKSFAESLYRALLRLDPARKPRIQAVFRYFKNHKDLSQDQVHHSLIAALGIHIVRKAWTEARADIHELLVVEPGDNNHTLENKSSLVAAAPPSEDPPVEMGTVPAPPTSPQRQEEKKYTYHPGEERKEARDRKEKVLKFRFRHGLGNEDGQLAHPPFNACITSMEDDVQLNVEDDLADKAPHAFVCPISLELMTRAVVAGDGFAYQQEALDEWILQKRREHFPLHSPMTNAPMAPFYIPSFTLRSLIGDYVEKVRTKRPRVD
Sbjct:    1 MSNISSSSAWAAEAELAAHGGDISREAGIRPIDSINTISGPTITHYPPQSLRCRRKSFAESLYRALLRLDPARKPRIQAVFRYFKNHKDLSQDQVHHSLIAALGIHIVRKAWTEARADIHELLVVEPGDNNHTLENKSSLVAAAPPSEDPPVEMGTVPAPPTSPQRQEEKKYTYHPGEERKEARDRKEKVLKFRFRHGLGNEDGQLAHPPFNACITSMEDDVQLNVEDDLADKAPHAFVCPISLELMTRAVVAGDGFAYQQEALDEWILQKRREHFPLHSPMTNAPMAPFYIPSFTLRSLIGDYVEKVRTKRPRVD 316          
BLAST of EWM25316.1 vs. NCBI_GenBank
Match: gi|553181505|ref|XP_005853577.1| (wd sam and u-box domain-containing protein 1 [Nannochloropsis gaditana CCMP526] >gi|422295482|gb|EKU22781.1| wd sam and u-box domain-containing protein 1 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 649.818 bits (1675), Expect = 0.000e+0
Identity = 314/316 (99.37%), Postives = 314/316 (99.37%), Query Frame = 0
Query:    1 MSNISSSSAWAAEAELAAHGGDISREAGIRPIDSINTISGPTITHYPPQSLRCRRKSFAESLYRALLRLDPARKPRIQAVFRYFKNHKDLSQDQVHHSLIAALGIHIVRKAWTEARADIHELLVVEPGDNNHTLENKSSLVAAAPPSEDPPVEMGTVPAPPTSPQRQEEKKYTYHPGEERKEARDRKEKVLKFRFRHGLGNEDGQLAHPPFNACITSMEDDVQLNVEDDLADKAPHAFVCPISLELMTRAVVAGDGFAYQQEALDEWILQKRREHFPLHSPMTNAPMAPFYIPSFTLRSLIGDYVEKVRTKRPRVD 316
            MSNISSSSAWAAEAELAAH GDISREAGIRPIDSINTISGPTITHYPPQSLRCRRKSFAESLYRALLRLDPARKPRIQAVFRYFKNHKDLSQDQVHHSLIAALGIHIVRKAWTEARADIHELLVVEPGDNNHTLENKSSLVAAAPPSEDPPVEMGTVPAPPTSPQRQEEKKYTYHPGEERKEARDRKEKVLKFRFRHGLGNEDGQLAHPPFNACITSMEDDVQLNVEDDLADKAPHAFVCPISLELMTRAVVAGDGFAYQQEALDEWILQKRREH PLHSPMTNAPMAPFYIPSFTLRSLIGDYVEKVRTKRPRVD
Sbjct:    1 MSNISSSSAWAAEAELAAHDGDISREAGIRPIDSINTISGPTITHYPPQSLRCRRKSFAESLYRALLRLDPARKPRIQAVFRYFKNHKDLSQDQVHHSLIAALGIHIVRKAWTEARADIHELLVVEPGDNNHTLENKSSLVAAAPPSEDPPVEMGTVPAPPTSPQRQEEKKYTYHPGEERKEARDRKEKVLKFRFRHGLGNEDGQLAHPPFNACITSMEDDVQLNVEDDLADKAPHAFVCPISLELMTRAVVAGDGFAYQQEALDEWILQKRREHSPLHSPMTNAPMAPFYIPSFTLRSLIGDYVEKVRTKRPRVD 316          
BLAST of EWM25316.1 vs. NCBI_GenBank
Match: gi|195999252|ref|XP_002109494.1| (hypothetical protein TRIADDRAFT_53592 [Trichoplax adhaerens] >gi|190587618|gb|EDV27660.1| hypothetical protein TRIADDRAFT_53592 [Trichoplax adhaerens])

HSP 1 Score: 75.485 bits (184), Expect = 1.387e-11
Identity = 39/86 (45.35%), Postives = 57/86 (66.28%), Query Frame = 0
Query:  226 VEDDLADKAPHAFVCPISLELMTRAVVAGDGFAYQQEALDEWILQKRREHFPLHSPMTNAPM-APFYIPSFTLRSLIGDYVEKVRT 310
            ++D L +  P  F+CPIS E+MT  VVA DG++YQ++A++ W+    R    L SPMTNAP+ A   IP+ TL+SLI  Y++  R+
Sbjct:  455 LKDRLDNSIPDEFLCPISREVMTDPVVASDGYSYQRQAIESWLNGGNR----LTSPMTNAPLNASLLIPNKTLKSLIQKYLDGDRS 536          
BLAST of EWM25316.1 vs. NCBI_GenBank
Match: gi|942157038|ref|XP_005998025.2| (PREDICTED: WD repeat, SAM and U-box domain-containing protein 1 [Latimeria chalumnae])

HSP 1 Score: 68.5514 bits (166), Expect = 2.779e-9
Identity = 35/90 (38.89%), Postives = 54/90 (60.00%), Query Frame = 0
Query:  223 QLNVEDDLADKAPHAFVCPISLELMTRAVVAGDGFAYQQEALDEWILQKRREHFPLHSPMTNAPM-APFYIPSFTLRSLIGDYVEKVRTK 311
            +L V++   D  P  F+CPI+ ELM   V+A DG++Y++ A++ WI  K+R      SPMTN P+ +    P+ TL+  I  +VE  +TK
Sbjct:  393 ELRVQESATDNIPDEFLCPITRELMKDPVIASDGYSYERTAIENWINTKKRS-----SPMTNVPLQSSLLTPNRTLKMAIDRWVESQQTK 477          
BLAST of EWM25316.1 vs. NCBI_GenBank
Match: gi|700354764|ref|XP_009921673.1| (PREDICTED: WD repeat, SAM and U-box domain-containing protein 1-like [Haliaeetus albicilla])

HSP 1 Score: 63.1586 bits (152), Expect = 5.337e-9
Identity = 30/73 (41.10%), Postives = 46/73 (63.01%), Query Frame = 0
Query:  235 PHAFVCPISLELMTRAVVAGDGFAYQQEALDEWILQKRREHFPLHSPMTNAPMAPFYI-PSFTLRSLIGDYVE 306
            P  F+CPI+ ELM   V+A DG++Y++EA++ WI  +RR      SPMTN P+    + P+ TL+  I  ++E
Sbjct:   41 PDEFLCPITRELMKDPVIAADGYSYEKEAMENWISTRRR-----SSPMTNLPLPSLMLTPNRTLKMAISRWLE 108          
BLAST of EWM25316.1 vs. NCBI_GenBank
Match: gi|149047776|gb|EDM00392.1| (WD repeat, SAM and U-box domain containing 1, isoform CRA_b [Rattus norvegicus])

HSP 1 Score: 62.003 bits (149), Expect = 6.446e-9
Identity = 30/80 (37.50%), Postives = 49/80 (61.25%), Query Frame = 0
Query:  228 DDLADKAPHAFVCPISLELMTRAVVAGDGFAYQQEALDEWILQKRREHFPLHSPMTNAPMAPFYI-PSFTLRSLIGDYVE 306
            + L+   P  F+CPI+ ELM   V+A DG++Y++EA++ WI +K+R      SPMTN  +    + P+ TL+  I  ++E
Sbjct:    2 ESLSSGIPDEFICPITRELMKDPVIASDGYSYEREAMESWIHKKKRT-----SPMTNLALPSLVLTPNRTLKMAINRWLE 76          
BLAST of EWM25316.1 vs. NCBI_GenBank
Match: gi|1113805345|ref|XP_019335799.1| (PREDICTED: WD repeat, SAM and U-box domain-containing protein 1 isoform X2 [Alligator mississippiensis])

HSP 1 Score: 65.4698 bits (158), Expect = 7.898e-9
Identity = 31/80 (38.75%), Postives = 49/80 (61.25%), Query Frame = 0
Query:  228 DDLADKAPHAFVCPISLELMTRAVVAGDGFAYQQEALDEWILQKRREHFPLHSPMTNAPMAPFYI-PSFTLRSLIGDYVE 306
            D ++   P  F+CPI+ ELM   ++A DG++Y++EA++ WI  KRR      SPMTN P+    + P+ TL+  I  ++E
Sbjct:  150 DSVSVGIPDEFLCPITRELMKDPIIASDGYSYEKEAMENWISNKRR-----SSPMTNLPLQSLVLTPNRTLKMAISRWLE 224          
BLAST of EWM25316.1 vs. NCBI_GenBank
Match: gi|1117377792|ref|XP_019377899.1| (PREDICTED: WD repeat, SAM and U-box domain-containing protein 1 isoform X2 [Gavialis gangeticus])

HSP 1 Score: 65.4698 bits (158), Expect = 8.696e-9
Identity = 31/80 (38.75%), Postives = 49/80 (61.25%), Query Frame = 0
Query:  228 DDLADKAPHAFVCPISLELMTRAVVAGDGFAYQQEALDEWILQKRREHFPLHSPMTNAPMAPFYI-PSFTLRSLIGDYVE 306
            D ++   P  F+CPI+ ELM   ++A DG++Y++EA++ WI  KRR      SPMTN P+    + P+ TL+  I  ++E
Sbjct:  150 DSVSVGIPDEFLCPITRELMKDPIIASDGYSYEKEAMENWISNKRR-----SSPMTNLPLQSLVLTPNRTLKMAISRWLE 224          
BLAST of EWM25316.1 vs. NCBI_GenBank
Match: gi|729731050|ref|XP_010561373.1| (PREDICTED: WD repeat, SAM and U-box domain-containing protein 1 [Haliaeetus leucocephalus])

HSP 1 Score: 62.7734 bits (151), Expect = 9.732e-9
Identity = 30/73 (41.10%), Postives = 46/73 (63.01%), Query Frame = 0
Query:  235 PHAFVCPISLELMTRAVVAGDGFAYQQEALDEWILQKRREHFPLHSPMTNAPMAPFYI-PSFTLRSLIGDYVE 306
            P  F+CPI+ ELM   V+A DG++Y++EA++ WI  +RR      SPMTN P+    + P+ TL+  I  ++E
Sbjct:   50 PDEFLCPITRELMKDPVIAADGYSYEKEAMENWISTRRR-----SSPMTNLPLPSLMLTPNRTLKMAISRWLE 117          
BLAST of EWM25316.1 vs. NCBI_GenBank
Match: gi|944215090|gb|KQK81484.1| (bromodomain adjacent to zinc finger domain protein 2B isoform X1 [Amazona aestiva])

HSP 1 Score: 67.3958 bits (163), Expect = 9.913e-9
Identity = 32/73 (43.84%), Postives = 47/73 (64.38%), Query Frame = 0
Query:  235 PHAFVCPISLELMTRAVVAGDGFAYQQEALDEWILQKRREHFPLHSPMTNAPM-APFYIPSFTLRSLIGDYVE 306
            P  F+CPI+ ELM   V+A DG++Y++EA++ WI  KRR      SPMTN P+ +P   P+ TL+  I  ++E
Sbjct: 2540 PDEFLCPITRELMKDPVIAADGYSYEKEAIENWINSKRRS-----SPMTNLPLTSPMLTPNRTLKMAISRWLE 2607          
The following BLAST results are available for this feature:
BLAST of EWM25316.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107071|gb|EWM25316.1|0.000e+0100.00wd sam and u-box domain-containing protein 1 [Nann... [more]
gi|553181505|ref|XP_005853577.1|0.000e+099.37wd sam and u-box domain-containing protein 1 [Nann... [more]
gi|195999252|ref|XP_002109494.1|1.387e-1145.35hypothetical protein TRIADDRAFT_53592 [Trichoplax ... [more]
gi|942157038|ref|XP_005998025.2|2.779e-938.89PREDICTED: WD repeat, SAM and U-box domain-contain... [more]
gi|700354764|ref|XP_009921673.1|5.337e-941.10PREDICTED: WD repeat, SAM and U-box domain-contain... [more]
gi|149047776|gb|EDM00392.1|6.446e-937.50WD repeat, SAM and U-box domain containing 1, isof... [more]
gi|1113805345|ref|XP_019335799.1|7.898e-938.75PREDICTED: WD repeat, SAM and U-box domain-contain... [more]
gi|1117377792|ref|XP_019377899.1|8.696e-938.75PREDICTED: WD repeat, SAM and U-box domain-contain... [more]
gi|729731050|ref|XP_010561373.1|9.732e-941.10PREDICTED: WD repeat, SAM and U-box domain-contain... [more]
gi|944215090|gb|KQK81484.1|9.913e-943.84bromodomain adjacent to zinc finger domain protein... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5383rna5383Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications