rna5380, rna5380 (mRNA) Nannochloropsis gaditana

Overview
Namerna5380
Unique Namerna5380
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2157
Alignment locationCM002465.1:851866..853006 +

Link to JBrowse

Properties
Property NameValue
Productap2 ethylene-responsive transcription factor ant-like protein
Orig transcript idgnl|cribi|Naga_100135g5.5869.mrna
Orig protein idgnl|cribi|Naga_100135g5.5869
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:851866..853006 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100135g5gene5201Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5380rna5380-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25312.1cds5367Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5380 ID=rna5380|Name=rna5380|organism=Nannochloropsis gaditana|type=mRNA|length=2157bp
ATGGCGGACCCGCCCGACCCCAGACAATCCTTACCCGTGCCTCCACCGCC
ACCAGGGATGCCATCTCGGCCTGTTTCGTCCCCTATCTGGGCTAAAGACC
AAGATGGCAAGGACCTGGTTCATTCGAACGATGAGGAACTCAAGATCATG
GAGCCTGGATGCCTGGAGGTTCTACGAGAGTTTTCCCTAAAGTCGTACGT
CTTCTCCTCCCTTGGGTATTACAAAGCACGGCCTGCCGCGTTGCGCCGGG
AGATATTGAGCGGGATTACCCTGGCCCTGATCGAGGTTCCTGAATCCATT
GCCTTTGCTTTCATGGCGGGCCTGTCTCCATCGTACGGGATGGCCAGCGT
GGTGTGGCTGGGCACCTTGACCGGGATGTTCGGCGGCCGTCCGGCCATGA
TCAGTGGGGCAGCGGGGGCGATGGCTGTGGTGATGGGGGACTTGACTCGG
GAGGACGGACCTTTGCGCGATTTCACCCGAGCCGAGCGGGTGGAACATCT
GCTCATGTGCGTGGTCTTGATCGGGGCTATCGAATGCCTGTGTGCGCCTT
TCTTGTGCGGCTTTGTCAAGATTATCCCCCAGAGCGCCATGATTGGATTC
ATGAACGCGCTCGCCATCATCCTGGTCAAAGGCCAGACCGAAACCTTTCG
GATCTGCGCCACCCCCGACACCCTCTTCAACGACTGCCCCTCCGCGGACG
AGGTGTGGCTGGGGGCGGGCGATGCCCAGACTTGGTCCACCTTGGCCCTG
ATCGTTCTCACGCTGTTCATCATGTGGGGCCTCCCGAAGGTGAAACACGT
CGGGCACATCGTCCCGGCGTCCTTGGCGGCGATCGTGGTGGGCACGGCGG
TGGAGTGGGGCCTGTTGCGGCAGGTGTGGGACGCAGACGGGGCCGGGACG
CGGACGGTGGGGGAAACCGCGGAATTAGCAGCCGGGATGCCCGGGTGGCA
TTTCCCTGACTTACCAGCGTCGCCGGCCTGGGGAACGATCTGGGCCTACG
CCGCCTCCCTGGCCCTGATCGGGGGCGTGGAGACGGTCATGACGCACGAG
GTCGTGAACTCGCTCGTCAAGGATCCCCCCTCCTCGTTCAAGGCGAATCA
AGAGTGCGTGGTGCAAGGAATTGCCAACCTGTTCACCGGCTTGTTCCAGG
GCATGGGTGGCTCGGCCCTGGTAGGGGAAACCGTCATCAATGTGCTGCAC
GGCGCCCGCGGCAGGCTCTCCAGCACCACGGCCGGATTGACCATGCTTTT
CATCATGCTGGGGCTTTCGCCCGCGGTCCGCCTCCTGCCTATCGCGGTCT
TGACGGGCATTATCTGGTCCGTCGCCCTCCACACCTTCCAATGGCGGAAC
TTGATGCAGCTGCATAAAGTCCCTAGGGCGGACGCGGCCATCATCATCTT
GGTCACCGCCCTCTCCGTGGTCACGAATTTGGCGATCGGGATTGCCGTAG
GCGTGGCCGCTGCCTCAGTCTGGCACGTCTGGAGCAGCGGGCGGATGTTG
ACGGCCTCAGCCGCGGTGGGCGTGCCGGAGGGGAAAGTGGAAGCCAAGAA
GGGAGTGGAGGGGGAGGTGGAGAACGGGGAAGGGCAGCTCCGTAAGGTGT
ACAGGGTCCAAGCCCCGCTGTTTTTCGGCTCGACGCGGTCCTTGCTCTGC
CTGTTCGACTATTTGAACGATCCGGATGACGTGGTGGTGGACTTGAGCGC
CTCGCACGGCGGAATTCAGGACCTGTCCGGTATCACGGCGTTGAACGAGG
CCGGGAAGAATTACGAGGAGGTGGGGAAGAGTGTGACGTTGCTGGGTCTG
AACCCGGAGGCCTTGGCGATGATCGAAGCCTACCCGGATGCAGCCTCGCA
TTTGCGGGTCCCGGCGCTGAGGAAACGGAAGGAAGAGAAGGAGAGGCACG
GTCTGGACGCTTGCTTGGGCCACGACACGGATGTGCTGACGCTGGGGCCG
GACGGGCTGGAGCTGGGCTTGGAGATGGGCGTGGAGAATATCCATCCGCC
CATTCTAGGTTGGGGGAGGCGTGACGCAGGTGGGAAAGTCCAGACAAATC
ACGTGAGACAGGCAGGCGGTCGAGTGAAATGTAGTCAATTGAAAACTTCA
GGCAAAGAATGTTCGAAAGGAAGATCACGATGCTCCCAATCGTCGGCACT
CTCCTGA
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protein sequence of rna5380

>rna5380-protein ID=rna5380-protein|Name=rna5380|organism=Nannochloropsis gaditana|type=polypeptide|length=326bp
MGVNWNGKNNRWIAEVRHKKQRLLHRAFSDEEEAAHAIDRVLRQHFGETI
LTNFHHPSGVFLDPKHAFVTKVSTGSSSSCSDNTFTSTATWAVTYVEGLR
LYKAVIKLRGRPHLIGLFSSRDQAIAVIKKKTQPREKGGMSKSPKQSRFL
GVSWDCHHKKWTARLYHDGTRVLSQTFKEDQEEEAALVYDMYARRYHGDG
AFVNFDMNGNFLDPKNRSTRIDASAGVDKDSQNMDFRGVSWSKETNKWYA
QIRVAGRTFNLGYFSDVKAAALQYDMAARKYHGTYARCNFDLQGNRTQVR
MKLNNSAAAKVKYTVRENSDKEDENS
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mRNA from alignment at CM002465.1:851866..853006+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5380 ID=rna5380|Name=rna5380|organism=Nannochloropsis gaditana|type=mRNA|length=1141bp|location=Sequence derived from alignment at CM002465.1:851866..853006+ (Nannochloropsis gaditana)
ATGGGTGTAAACTGGAATGGAAAAAACAACCGTTGGATCGCTGAGGTGCG
GCACAAAAAGCAGCGACTGTTGCACAGGGCATTCTctgatgaagaagagg
cggcgcATGCAATCGACCGGGTCTTACGACAGCACTTCGGAGAGACGATT
CTGACCAATTTTCATCATCCCTCCGGCGTGTTCTTAGATCCGAAGCATGC
ATTTGTCACAAAGGTGTCAACAGGAAGCAGTTCATCTTGCAGCGACAACA
CTTTTACTTCCACGGCGACATGGGCCGTCACGTACGTCGAAGGGCTCCGT
CTCTACAAGGCGGTGATCAAACTGCGTGGGCGGCCACATCTCATTGGTCT
ATTCTCCTCCAGAGATCAAGCGATTGCAGTTATTAAGAAGAAGACACagc
cgagggagaaggggggcatGTCCAAGTCTCCTAAACAGTCTCGTTTCTTG
GGGGTCTCCTGGGATTGTCACCACAAGAAATGGACCGCACGTCTATACCA
TGATGGGACGCGCGTTTTGTCTCAAACATTCAAGGAAGatcaggaagagg
aggctgccCTCGTGTATGATATGTACGCGCGCAGGTTCGTCAAACGCGGG
TGTGCGTGAATGTGGGAAGGCTTTATCTTCGTTAGTTTCTCGCCTGAATC
CGCTGCATTGATTCTATTTCTTTTATACAACTGGCTAAAATACTACTTTC
CTATGTTCTTGTCCATTCCCGTTTCCATATACACATCTTCCTAGGTACCA
CGGTGACGGCGCCTTTGTCAATTTCGACATGAACGGAAACTTCTTGGACC
CCAAAAATCGATCGACCCGGATAGATGCCAGCGCCGGCGTAGACAAAGAC
AGTCAAAACATGGATTTTAGAGGTGTCTCGTGGTCCAAGGAGACCAATAA
ATGGTACGCGCAGATTCGCGTGGCAGGACGTACGTTCAACCTAGGATATT
TCTCAGACGTCAAAGCCGCTGCCTTGCAGTACGACATGGCGGCGCGCAAA
TATCATGGGACATACGCGCGTTGCAATTTTGATTTACAAGGAAATCGAAC
GCAGGTTCGAATGAAGCTCAACAACTCGGCAGCTGCCAAGGTCAAATATA
CTGTGCGTGAGAACTCGGACAAAGAAGACGAGAACAGTTGA
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Coding sequence (CDS) from alignment at CM002465.1:851866..853006+

>rna5380 ID=rna5380|Name=rna5380|organism=Nannochloropsis gaditana|type=CDS|length=1962bp|location=Sequence derived from alignment at CM002465.1:851866..853006+ (Nannochloropsis gaditana)
ATGGGTGTAAACTGGAATGGAAAAAACAACCGTTGGATCGCTGAGGTGCG
GCACAAAAAGCAGCGACTGTTGCACAGGGCATTCTctgatgaagaagagg
cggcgcATGCAATCGACCGGGTCTTACGACAGCACTTCGGAGAGACGATT
CTGACCAATTTTCATCATCCCTCCGGCGTGTTCTTAGATCCGAAGCATGC
ATTTGTCACAAAGGTGTCAACAGGAAGCAGTTCATCTTGCAGCGACAACA
CTTTTACTTCCACGGCGACATGGGCCGTCACGTACGTCGAAGGGCTCCGT
CTCTACAAGGCGGTGATCAAACTGCGTGGGCGGCCACATCTCATTGGTCT
ATTCTCCTCCAGAGATCAAGCGATTGCAGTTATTAAGAAGAAGACACagc
cgagggagaaggggggcatGTCCAAGTCTCCTAAACAGTCTCGTTTCTTG
GGGGTCTCCTGGGATTGTCACCACAAGAAATGGACCGCACGTCTATACCA
TGATGGGACGCGCGTTTTGTCTCAAACATTCAAGGAAGatcaggaagagg
aggctgccCTCGTGTATGATATGTACGCGCGCAGGTACCACGGTGACGGC
GCCTTTGTCAATTTCGACATGAACGGAAACTTCTTGGACCCCAAAAATCG
ATCGACCCGGATAGATGCCAGCGCCGGCGTAGACAAAGACAGTCAAAACA
TGGATTTTAGAGGTGTCTCGTGGTCCAAGGAGACCAATAAATGGTACGCG
CAGATTCGCGTGGCAGGACGTACGTTCAACCTAGGATATTTCTCAGACGT
CAAAGCCGCTGCCTTGCAGTACGACATGGCGGCGCGCAAATATCATGGGA
CATACGCGCGTTGCAATTTTGATTTACAAGGAAATCGAACGCAGGTTCGA
ATGAAGCTCAACAACTCGGCAGCTGCCAAGGTCAAATATACTGTGCGTGA
GAACTCGGACAAAGAAGACGAGAACAGTTGAATGGGTGTAAACTGGAATG
GAAAAAACAACCGTTGGATCGCTGAGGTGCGGCACAAAAAGCAGCGACTG
TTGCACAGGGCATTCTctgatgaagaagaggcggcgcATGCAATCGACCG
GGTCTTACGACAGCACTTCGGAGAGACGATTCTGACCAATTTTCATCATC
CCTCCGGCGTGTTCTTAGATCCGAAGCATGCATTTGTCACAAAGGTGTCA
ACAGGAAGCAGTTCATCTTGCAGCGACAACACTTTTACTTCCACGGCGAC
ATGGGCCGTCACGTACGTCGAAGGGCTCCGTCTCTACAAGGCGGTGATCA
AACTGCGTGGGCGGCCACATCTCATTGGTCTATTCTCCTCCAGAGATCAA
GCGATTGCAGTTATTAAGAAGAAGACACagccgagggagaaggggggcat
GTCCAAGTCTCCTAAACAGTCTCGTTTCTTGGGGGTCTCCTGGGATTGTC
ACCACAAGAAATGGACCGCACGTCTATACCATGATGGGACGCGCGTTTTG
TCTCAAACATTCAAGGAAGatcaggaagaggaggctgccCTCGTGTATGA
TATGTACGCGCGCAGGTACCACGGTGACGGCGCCTTTGTCAATTTCGACA
TGAACGGAAACTTCTTGGACCCCAAAAATCGATCGACCCGGATAGATGCC
AGCGCCGGCGTAGACAAAGACAGTCAAAACATGGATTTTAGAGGTGTCTC
GTGGTCCAAGGAGACCAATAAATGGTACGCGCAGATTCGCGTGGCAGGAC
GTACGTTCAACCTAGGATATTTCTCAGACGTCAAAGCCGCTGCCTTGCAG
TACGACATGGCGGCGCGCAAATATCATGGGACATACGCGCGTTGCAATTT
TGATTTACAAGGAAATCGAACGCAGGTTCGAATGAAGCTCAACAACTCGG
CAGCTGCCAAGGTCAAATATACTGTGCGTGAGAACTCGGACAAAGAAGAC
GAGAACAGTTGA
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Synonyms
Publications