EWM25312.1, cds5367 (CDS) Nannochloropsis gaditana

Overview
NameEWM25312.1
Unique Namecds5367
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:851866..852449 +
Alignment locationCM002465.1:852610..853006 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25312.1
Productap2 ethylene-responsive transcription factor ant-like protein
Orig transcript idgnl|cribi|Naga_100135g5.5869.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:851866..852449 +
CM002465.1supercontigCM002465.1:852610..853006 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003700DNA-binding transcription factor activity
Vocabulary: INTERPRO
TermDefinition
IPR016177DNA-bd_dom
IPR001471AP2/ERF_dom
Homology
BLAST of EWM25312.1 vs. NCBI_GenBank
Match: gi|585107067|gb|EWM25312.1| (ap2 ethylene-responsive transcription factor ant-like protein [Nannochloropsis gaditana])

HSP 1 Score: 685.256 bits (1767), Expect = 0.000e+0
Identity = 326/326 (100.00%), Postives = 326/326 (100.00%), Query Frame = 0
Query:    1 MGVNWNGKNNRWIAEVRHKKQRLLHRAFSDEEEAAHAIDRVLRQHFGETILTNFHHPSGVFLDPKHAFVTKVSTGSSSSCSDNTFTSTATWAVTYVEGLRLYKAVIKLRGRPHLIGLFSSRDQAIAVIKKKTQPREKGGMSKSPKQSRFLGVSWDCHHKKWTARLYHDGTRVLSQTFKEDQEEEAALVYDMYARRYHGDGAFVNFDMNGNFLDPKNRSTRIDASAGVDKDSQNMDFRGVSWSKETNKWYAQIRVAGRTFNLGYFSDVKAAALQYDMAARKYHGTYARCNFDLQGNRTQVRMKLNNSAAAKVKYTVRENSDKEDENS 326
            MGVNWNGKNNRWIAEVRHKKQRLLHRAFSDEEEAAHAIDRVLRQHFGETILTNFHHPSGVFLDPKHAFVTKVSTGSSSSCSDNTFTSTATWAVTYVEGLRLYKAVIKLRGRPHLIGLFSSRDQAIAVIKKKTQPREKGGMSKSPKQSRFLGVSWDCHHKKWTARLYHDGTRVLSQTFKEDQEEEAALVYDMYARRYHGDGAFVNFDMNGNFLDPKNRSTRIDASAGVDKDSQNMDFRGVSWSKETNKWYAQIRVAGRTFNLGYFSDVKAAALQYDMAARKYHGTYARCNFDLQGNRTQVRMKLNNSAAAKVKYTVRENSDKEDENS
Sbjct:    1 MGVNWNGKNNRWIAEVRHKKQRLLHRAFSDEEEAAHAIDRVLRQHFGETILTNFHHPSGVFLDPKHAFVTKVSTGSSSSCSDNTFTSTATWAVTYVEGLRLYKAVIKLRGRPHLIGLFSSRDQAIAVIKKKTQPREKGGMSKSPKQSRFLGVSWDCHHKKWTARLYHDGTRVLSQTFKEDQEEEAALVYDMYARRYHGDGAFVNFDMNGNFLDPKNRSTRIDASAGVDKDSQNMDFRGVSWSKETNKWYAQIRVAGRTFNLGYFSDVKAAALQYDMAARKYHGTYARCNFDLQGNRTQVRMKLNNSAAAKVKYTVRENSDKEDENS 326          
BLAST of EWM25312.1 vs. NCBI_GenBank
Match: gi|553181513|ref|XP_005853579.1| (aintegumenta-like protein [Nannochloropsis gaditana CCMP526] >gi|422295484|gb|EKU22783.1| aintegumenta-like protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 394.815 bits (1013), Expect = 7.400e-137
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0
Query:  140 MSKSPKQSRFLGVSWDCHHKKWTARLYHDGTRVLSQTFKEDQEEEAALVYDMYARRYHGDGAFVNFDMNGNFLDPKNRSTRIDASAGVDKDSQNMDFRGVSWSKETNKWYAQIRVAGRTFNLGYFSDVKAAALQYDMAARKYHGTYARCNFDLQGNRTQVRMKLNNSAAAKVKYTVRENSDKEDENS 326
            MSKSPKQSRFLGVSWDCHHKKWTARLYHDGTRVLSQTFKEDQEEEAALVYDMYARRYHGDGAFVNFDMNGNFLDPKNRSTRIDASAGVDKDSQNMDFRGVSWSKETNKWYAQIRVAGRTFNLGYFSDVKAAALQYDMAARKYHGTYARCNFDLQGNRTQVRMKLNNSAAAKVKYTVRENSDKEDENS
Sbjct:    1 MSKSPKQSRFLGVSWDCHHKKWTARLYHDGTRVLSQTFKEDQEEEAALVYDMYARRYHGDGAFVNFDMNGNFLDPKNRSTRIDASAGVDKDSQNMDFRGVSWSKETNKWYAQIRVAGRTFNLGYFSDVKAAALQYDMAARKYHGTYARCNFDLQGNRTQVRMKLNNSAAAKVKYTVRENSDKEDENS 187          
BLAST of EWM25312.1 vs. NCBI_GenBank
Match: gi|760438117|ref|XP_011396127.1| (AP2-like ethylene-responsive transcription factor AIL5 [Auxenochlorella protothecoides] >gi|675350817|gb|KFM23257.1| AP2-like ethylene-responsive transcription factor AIL5 [Auxenochlorella protothecoides])

HSP 1 Score: 72.0182 bits (175), Expect = 1.960e-10
Identity = 54/149 (36.24%), Postives = 73/149 (48.99%), Query Frame = 0
Query:  147 SRFLGVSWDCHHKKWTARLYHDGTRVLSQTFKEDQEEEAALVYDMYARRYHGDGAFVNFDMN--GNFLDPKNRSTRIDASAGVDKDSQNMDFRGVSWSKETNKWYAQIRVAGRTFNLGYFSDVKAAALQYDMAARKYHGTYARCNFDLQ 293
            SRF GVSW+ +  KW A+++  G+ V    + E  EE+AA  YD    R  G  A  NF  +  G F  P +   +  A+ G         FRGVSWS     W A++    R   LG F D  +AA +YD+A  + +G  A  NF LQ
Sbjct:  117 SRFRGVSWNSNCAKWRAQVWK-GSEVHHLGYFEG-EEDAARAYDEAVLRIRGPDAPTNFPRSQYGAFPVPGDHDFQGGAAIGAS------GFRGVSWSDAHQAWLAELWNGSRFQLLGSFRDEASAARRYDVACLELNGADALTNFPLQ 257          

HSP 2 Score: 70.4774 bits (171), Expect = 6.198e-10
Identity = 54/174 (31.03%), Postives = 75/174 (43.10%), Query Frame = 0
Query:  118 FSSRDQAIAVIKKKTQPREKGGMSKSPKQSRFLGVSWDCHHKKWTARLYHDGTRVLSQTFKEDQEEEAALVYDMYARRYHGDGAFVNFDMNGNFLDPKNRSTRIDASAGVDKDSQNMD-FRGVSWSKETNKWYAQIRVAGRTFNLGYFSDVKAAALQYDMAARKYHGTYARCNF 290
            FS R    +   ++  PR+  G+   P  S++ GV W   + KW AR+Y  G +     +    EE AA  YD YA R HG+   +NF       +       +    G     +    FRGVSW+    KW AQ+       +LGYF   + AA  YD A  +  G  A  NF
Sbjct:   12 FSPRTTPSSAPARR--PRQGLGVRGGP--SKYRGVVWHKSNSKWEARIYEGGKQKFLGYYT--SEEAAAHAYDTYAVRLHGNLQKLNFP------ELYASGAEVYHDPGTPPPVKGTSRFRGVSWNSNCAKWRAQVWKGSEVHHLGYFEGEEDAARAYDEAVLRIRGPDAPTNF 173          
BLAST of EWM25312.1 vs. NCBI_GenBank
Match: gi|1085335299|gb|OGV08692.1| (hypothetical protein A2299_16350 [Ignavibacteria bacterium RIFOXYB2_FULL_37_11] >gi|1085340621|gb|OGV13479.1| hypothetical protein A2237_17045 [Ignavibacteria bacterium RIFOXYA2_FULL_38_8] >gi|1085341951|gb|OGV14770.1| hypothetical protein A2440_09730 [Ignavibacteria bacterium RIFOXYC2_FULL_38_25] >gi|1085349947|gb|OGV22305.1| hypothetical protein A2499_04980 [Ignavibacteria bacterium RIFOXYC12_FULL_38_8] >gi|1085410411|gb|OGV79263.1| hypothetical protein A2X65_02100 [Melioribacter sp. GWF2_38_21])

HSP 1 Score: 69.3218 bits (168), Expect = 1.059e-9
Identity = 47/147 (31.97%), Postives = 76/147 (51.70%), Query Frame = 0
Query:  145 KQSRFLGVSWDCHHKKWTARLYHDGTRVLSQTFKEDQEEEAALVYDMYARRYHGDGAFVNFDMNGNFLDPKNRSTRIDASAGVDKDSQNMDFRGVSWSKETNKWYAQIRVAGRTFNLGYFSDVKAAALQYDMAARKYHGTYARCNFD 291
            K S++ GVS+    KKW A +Y+DG +     F  ++E +AA  YD     Y+ D   +NF ++     P N   RI  +  + + + ++ + GV +S   +KW A+I    +  ++G+F+    AA  YD  AR YHG  A  NF+
Sbjct:   23 KTSKYAGVSYRKARKKWCANIYYDGKQQWVGYF--EKEIDAAKAYDKVMAYYNADVHKMNFAIDLA-EAPNNIRRRIRVAGKIKRKASSI-YLGVHYSDRLHKWKAEISHNKQCIHIGFFNSETEAASAYDKVARYYHGENAVTNFE 165          

HSP 2 Score: 62.3882 bits (150), Expect = 2.070e-7
Identity = 52/155 (33.55%), Postives = 74/155 (47.74%), Query Frame = 0
Query:  138 GGMSKSPKQSRFLGVSWDCHHKKWTARLYHDGTRVLSQTFKEDQEEEAALVYDMYARRYHGDGAFVNFDMNGNFLDPKNRSTRIDASAGVDKDSQNMDFRGVSWSKETNKWYAQIRV-AGRTFNLGYFSDVKAAALQYDMAARKYHGTYARCNFD 291
             G  K    S +LGV +     KW A + H+   +    F  + E EAA  YD  AR YHG+ A  NF+  G+   P        +   +++      +RGV   +  N W AQI+V   R ++  Y ++V+AA   YD AAR YHG  A+ NF 
Sbjct:   99 AGKIKRKASSIYLGVHYSDRLHKWKAEISHNKQCIHIGFF--NSETEAASAYDKVARYYHGENAVTNFE--GHHSAP-------ASFIKLERHPVTSHYRGVC--RHKNIWLAQIKVHRKRVWSREYKTEVEAAE-GYDRAARYYHGEKAQTNFS 239          

HSP 3 Score: 61.2326 bits (147), Expect = 4.798e-7
Identity = 70/281 (24.91%), Postives = 114/281 (40.57%), Query Frame = 0
Query:    2 GVNWNGKNNRWIAEVRHKKQRLLHRAFSDEEEAAHAIDRVLRQHFGETILTNFHHPSGVFLDPKHAFVTKVSTGSSSSCSDNTFTSTATWAVTYVEGLRLYKAVIKLRGRPHLIGLFSSRDQAIAVIKK-----------------KTQPREKGGMSKSPKQSRFLGVSWDCHHKK-WTARLYHDGTRVLSQTFKEDQEEEAALVYDMYARRYHGDGAFVNFDMNGNFLDPKNRSTRIDASAGVDKDSQNMDFRGVSWSKETNKWYAQIRVAGRTFNLGYF 264
            GV++     +W A + +  ++     F  E +AA A D+V+  +  +    NF       +D   A    +      +       S+    V Y + L  +KA I    +   IG F+S  +A +   K                  + P     + + P  S + GV   C HK  W A++     RV S+ +K   E EAA  YD  AR YHG+ A  NF         + R  +  +++          ++GVS+ K   +W AQI++ G+T  LGY+
Sbjct:   29 GVSYRKARKKWCANIYYDGKQQWVGYFEKEIDAAKAYDKVMAYYNADVHKMNF------AIDLAEA-PNNIRRRIRVAGKIKRKASSIYLGVHYSDRLHKWKAEISHNKQCIHIGFFNSETEAASAYDKVARYYHGENAVTNFEGHHSAPASFIKLERHPVTSHYRGV---CRHKNIWLAQIKVHRKRVWSREYK--TEVEAAEGYDRAARYYHGEKAQTNFSGTAILSHVEIRKEKCPSTS---------SYKGVSYCKRDKRWIAQIKLNGKTKYLGYY 288          
BLAST of EWM25312.1 vs. NCBI_GenBank
Match: gi|255081480|ref|XP_002507962.1| (AP2-like protein [Micromonas commoda] >gi|226523238|gb|ACO69220.1| AP2-like protein [Micromonas commoda])

HSP 1 Score: 68.9366 bits (167), Expect = 2.766e-9
Identity = 56/180 (31.11%), Postives = 88/180 (48.89%), Query Frame = 0
Query:  127 VIKKKTQPREKGGMSKSPKQ-----SRFLGVSWDCHHKKWTARLYHDGTRVLSQTFKEDQEEEAALVYDMYARRYHGDGAFVNFDMN--GNFLDPKNRSTRIDASAGVDKDSQNM-----DFRGVSWSKETNKWYAQI-RVAGRTFN-LGYFSDVKAAALQYDMAARKYHGTYARCNFDL 292
            V K+K     + G   +PK+     S++ GV+  C   +W A ++ DG +V    F  D E++AAL YD+ A +  G+ A  NFDMN     L   N   + +    + + S+        FRGV+   +  +W A+I ++ GR +  LG +   + AA+ YD  A +  G  A  NFDL
Sbjct:  203 VAKRKRDGISRQGFGDTPKRGTRTTSKYRGVTHHCRTGRWEAHIWEDGKQVYLGGF--DSEQQAALAYDVAAIKCRGEEASTNFDMNDYAQELAALNSVGKEELVLSLRRQSKGFVKGSSKFRGVT-RHQKGRWEARIGQLVGRKYRYLGLYDQAEEAAVAYDTEAVRQKGFDAVTNFDL 379          
BLAST of EWM25312.1 vs. NCBI_GenBank
Match: gi|825995196|ref|WP_047156244.1| (hypothetical protein [Trichodesmium erythraeum])

HSP 1 Score: 61.6178 bits (148), Expect = 1.709e-8
Identity = 35/92 (38.04%), Postives = 52/92 (56.52%), Query Frame = 0
Query:  205 FDMNGNFLDPKNRSTR-IDASAGVDKDS---QNMDFRGVSWSKETNKWYAQIRVAGRTFNLGYFSDVKAAALQYDMAARKYHGTYARCNFDL 292
            + +N N LD +  + R +  SA + +      +  +RGV W K+  KW A+I+V  +   LG F   K AA+ YD AARKY+G+ AR NF +
Sbjct:   10 YHINHNKLDNQRENLRLVKGSARMHRRPSVKHSSKYRGVYWCKDKRKWIAEIKVYKKQIRLGRFEVEKDAAIAYDEAARKYYGSLARTNFTI 101          
BLAST of EWM25312.1 vs. NCBI_GenBank
Match: gi|255071407|ref|XP_002499377.1| (predicted protein [Micromonas commoda] >gi|226514640|gb|ACO60636.1| predicted protein [Micromonas commoda])

HSP 1 Score: 65.4698 bits (158), Expect = 2.365e-8
Identity = 46/143 (32.17%), Postives = 67/143 (46.85%), Query Frame = 0
Query:  144 PKQSRFLGVSWDCHHKKWTARLYHDGTRVLSQTFKEDQEEEAALVYDMYARRYHGDGAFVNFDMNGNFLDPKNRSTRIDASAGVDK--------DSQNMDFRGVSWSKETNKWYAQIRVAGRTFNLGYFSDVKAAALQYDMAA 278
            PK S+F GV+     KKW A++   G    +     D EEEAA  +D  A    G  A  N+ +  ++        ++  S  V           +Q   +RGVS  K+T KW+ QI V G+  +LG+F+  + AA  YD AA
Sbjct:    3 PKSSKFRGVTLFRPTKKWRAQISAGGK--TTSLGDHDTEEEAARAFDRAAINKAGPVAATNYPIT-DYAKEMEALQKVSVSELVATLRAKARRHGTQTSQYRGVSLLKQTGKWHGQINVGGKQLHLGFFATEELAARAYDRAA 142          
BLAST of EWM25312.1 vs. NCBI_GenBank
Match: gi|1098844409|ref|XP_018828978.1| (PREDICTED: AP2-like ethylene-responsive transcription factor BBM isoform X3 [Juglans regia])

HSP 1 Score: 65.855 bits (159), Expect = 3.020e-8
Identity = 68/203 (33.50%), Postives = 101/203 (49.75%), Query Frame = 0
Query:  123 QAIAVIKKKTQPREKGGMSKSPKQSRFLGVSWDCHHKKWTAR----LYHDGTRVLSQTFKE-----DQEEEAALVYDMYARRYHGDGAFVNFDMNGNF---LDPKNRSTRIDASAGVDKDSQNMD-----FRGVSWSKETNKWYAQI-RVAG-RTFNLGYFSDVKAAALQYDMAARKYHGTYARCNFDLQGNRTQVRMKLNNS 306
            Q+ + I+  T PR K   +   + S + GV+    H+ WT R    L+ +  R   QT K      D+EE+AA  YD+ A +Y G     NF M+ N+   L+     TR++  A + + S         +RGV+   +  +W A+I RVAG +   LG FS  + AA  YD+AA K+ G  A  NFD+  NR  V+  L +S
Sbjct:  281 QSSSAIEAATVPR-KSIDTFGQRTSIYRGVTRFSRHR-WTGRYEAHLWDNSCRREGQTRKGRQGGYDKEEKAARAYDLAALKYWGTTTTTNFPMS-NYEKELEEMKHMTRLEYVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDVAAIKFRGLNAVTNFDM--NRYDVKSILESS 478          
BLAST of EWM25312.1 vs. NCBI_GenBank
Match: gi|499933104|ref|WP_011613838.1| (pathogenesis-related transcriptional factor and ERF [Trichodesmium erythraeum] >gi|110168976|gb|ABG53516.1| Pathogenesis-related transcriptional factor and ERF [Trichodesmium erythraeum IMS101])

HSP 1 Score: 62.3882 bits (150), Expect = 3.235e-8
Identity = 35/92 (38.04%), Postives = 52/92 (56.52%), Query Frame = 0
Query:  205 FDMNGNFLDPKNRSTR-IDASAGVDKDS---QNMDFRGVSWSKETNKWYAQIRVAGRTFNLGYFSDVKAAALQYDMAARKYHGTYARCNFDL 292
            + +N N LD +  + R +  SA + +      +  +RGV W K+  KW A+I+V  +   LG F   K AA+ YD AARKY+G+ AR NF +
Sbjct:   64 YHINHNKLDNQRENLRLVKGSARMHRRPSVKHSSKYRGVYWCKDKRKWIAEIKVYKKQIRLGRFEVEKDAAIAYDEAARKYYGSLARTNFTI 155          
BLAST of EWM25312.1 vs. NCBI_GenBank
Match: gi|302791093|ref|XP_002977313.1| (hypothetical protein SELMODRAFT_107288, partial [Selaginella moellendorffii] >gi|300154683|gb|EFJ21317.1| hypothetical protein SELMODRAFT_107288, partial [Selaginella moellendorffii])

HSP 1 Score: 65.0846 bits (157), Expect = 3.418e-8
Identity = 73/258 (28.29%), Postives = 112/258 (43.41%), Query Frame = 0
Query:   66 HAFVTKVSTGSSSSCSDNTFTSTATWAVTYVEGLRLYKAVIKLRGRPHLIGLFSSRDQAIAVIKKKTQPREK----GGMSKSPKQSR---------FLGVSWDCHHKKWTAR----LYHDGTRVLSQTFKE-----DQEEEAALVYDMYARRYHGDGAFVNFDMNG--NFLDPKNRSTRIDASAGVDKDSQNMD-----FRGVSWSKETNKWYAQI-RVAG-RTFNLGYFSDVKAAALQYDMAARKYHGTYARCNFDL 292
            H   TK +   + + +     STAT   +       + A+  L+    L    S   Q+       +QP +K    GG   SP++S          + GV+      +WT R    L+ +  R   QT K      D+EE+AA  YD+ A +Y G    +NF ++     L+     TR +  A + + S         +RGV+   +  +W A+I RVAG +   LG FS  + AA  YD+AA K+ G  A  NFD+
Sbjct:   65 HQLATKATIAPAIAANPGAAKSTATGGASGE-----FSALANLQ---SLTLSMSPGSQSSTAAAAPSQPPKKRPKAGGKEPSPRKSIDTFGQRTSIYRGVT---SRHRWTGRYEAHLWDNSCRKEGQTRKGRQGGYDKEEKAARAYDLAALKYWGPTTTINFPLSDYEKELEEMKHMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGINAVTNFDI 311          
The following BLAST results are available for this feature:
BLAST of EWM25312.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107067|gb|EWM25312.1|0.000e+0100.00ap2 ethylene-responsive transcription factor ant-l... [more]
gi|553181513|ref|XP_005853579.1|7.400e-137100.00aintegumenta-like protein [Nannochloropsis gaditan... [more]
gi|760438117|ref|XP_011396127.1|1.960e-1036.24AP2-like ethylene-responsive transcription factor ... [more]
gi|1085335299|gb|OGV08692.1|1.059e-931.97hypothetical protein A2299_16350 [Ignavibacteria b... [more]
gi|255081480|ref|XP_002507962.1|2.766e-931.11AP2-like protein [Micromonas commoda] >gi|22652323... [more]
gi|825995196|ref|WP_047156244.1|1.709e-838.04hypothetical protein [Trichodesmium erythraeum][more]
gi|255071407|ref|XP_002499377.1|2.365e-832.17predicted protein [Micromonas commoda] >gi|2265146... [more]
gi|1098844409|ref|XP_018828978.1|3.020e-833.50PREDICTED: AP2-like ethylene-responsive transcript... [more]
gi|499933104|ref|WP_011613838.1|3.235e-838.04pathogenesis-related transcriptional factor and ER... [more]
gi|302791093|ref|XP_002977313.1|3.418e-828.29hypothetical protein SELMODRAFT_107288, partial [S... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5380rna5380Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications