rna538, rna538 (mRNA) Nannochloropsis gaditana

Overview
Namerna538
Unique Namerna538
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2029
Alignment locationCM002455.1:1345116..1345697 -

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Properties
Property NameValue
Productdna replication licensing factor mcm3-like protein
Orig transcript idgnl|cribi|Naga_102881g1.7068.mrna
Orig protein idgnl|cribi|Naga_102881g1.7068
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1345116..1345697 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102881g1gene519Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna538rna538-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30135.1cds538Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna538 ID=rna538|Name=rna538|organism=Nannochloropsis gaditana|type=mRNA|length=2029bp
TGTGATACCCCTTGCGAGACACGTTGACTCACTCTCGCTCCCTCCTTCCT
TTCCCTCAGGTCGCCATCCACGAGGTGATGGAGCAGCAGACAGTGACCAT
CGCCAAGGTAAGGGTCGATGGCAGTCATTCTTCTCACTCTTACACGCGAA
CTGGGATGGTCCTCCTCCGAGAGCAATCCGAAGTCCGGAGGGACAGAGTG
GCAGGCAGGGACTGGCAAAAAGAGCAACGTCAGCAGGAGCGCCTGAACCA
TCGACACTGCTTTCCCAGACGCATTTGCTCCATCTTTCGTCGGCCTTCCC
CCTGCTTTCGAATGCTCAATCCTTCCTTTCTTCCCTCCCTCCTTCCTTCC
CCTCCCCTCCAGGCCGGTATCCACGCCTCCCTGAACGCCCGGTGCTCCGT
CCTCGCCGCCGCCAACCCCGTCTACGGCCAGTACCACAAAGCCCGGACCG
TGCAAGAGAATGTGGGGCTCCCCGACTCCCTCCTCTCCCGCTTCGACCTC
CTCTTCGTCGTCCTCGACCAGATCGACCCCGGGACCGACCGTGCCATCGC
CGAGCACGTCATTCGAGCCCATTCCTACCGGCGTCCAGGCACCGACATGG
CCCCTGAACGCCTGTCCTCCGGCCCCCTCGACCTCTCCTCTTCCCTGGAA
GACGATAAAGACTCACTGGAGGAGCATCGGGTCTGGGAGGACGTCAACCC
CTTAGTCGCGCGAGGAGAGAGAGAGCGAGGAAGGGGCGAGCCGGCGTCCG
AGGAAGAGGACATCTTGACTAAAAATTTCCTCCGAAAGTACATTTTTTAC
GCGAAATCCAGGATCCAACCACGCCTGACCTCAGAAGCCGAGGATGCGAT
CGCCAATTATTATTCCACATTGCGGAGCAAGCAGGAACGCAGGACCGTGC
CTATCACTCCCCGGACGCTGGAAACCCTCATCCGTCTCAGCACCGCCCAT
GCCAAGGTGCGTCTGTCGAACGAGATCACTCGGGATGACTGTGAAAGGGC
CATGGAGCTCCTGGCCTTCGCGCTCTACCACGAGGGGAACGAGCCGCCCG
GCCGCCTCCCGCCCTCCGTCCGCCTCACGGAGGAGGAGGAAGAAGAAGGG
GAGGGAGGGGGGGAGGAAGGGAAGGGGGGCAGCAATGGGAGGCCTCGGAG
GAGAAGACGGGCGGACCGTGCATCCGGGATGTCGGAAGGGACGGACGAGG
AGGAGGACGAGGAGGAGGGCGAGGACGAGGGCGCCTCCCCCCATAAGGGG
GCGGGGAAGAAGCCTCGCAGCCGAGCACCCAAGGAAGGGCAAGCCCCGGG
CAAGGAAGAGGAGGTGCGGGAAAGCTTTTTCTTGTCCCGGTTGAGCGCAG
CGTTGCAGAGTCACGGGGATGGGCTGCCTCTGGCCCAATTTGTGGAGATA
TTGAACGAGGGGTTGGAGGGGAGGGAGGGCATGCCCGCCTTCTCGGAAAA
GGAAGTTTTAGCCCGGGTGGTGGCGGAGGACGAGAATGGGAAGTGCTTCT
GGGAAGACAATGCTCAAGTCATCTACACGTCGTAGGGCGGGTGACACGGT
TGGGTGAGGAGGGGAGAAGGAGGACGTTTGCCACTGGCCATTCGCAGGAA
AAGGAGAGGAGGGAAGCACGTGTCATTGAAGGGGTATTTTACAAAGTGAG
GGGGGAATCCCCTTCCGCCCTTCAAAAAGGGTAAAGCAGGCAGTAAATGA
CACAAAAATATGTATAAGGCGTTGCACAATCCAGCAAGGAACTAAAGCAC
ACAGCGACACTTGCAGTCATAGGTGGAGGGCCCCAGGTCCCGCACACATC
GAGGCTCGACCGGGGAGAGAAGACGAGGAGCTACACAGGGGGAGAGCAGG
GTAAAATAGCACATGCCAGCGTGCCGACAATGAAAGTATTCAGGCACTCG
GGCTATCGTCAAGGGAGGGACGCCGAATGCACCTTAGTTCCTTCTTTGCC
TGCTTTTCTTTCCGTTGCCGGTTCAGGAGGCTGCCTTGTCCCTCACTACC
CCCACACGTGGATTGCTTCCAACACTGCT
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protein sequence of rna538

>rna538-protein ID=rna538-protein|Name=rna538|organism=Nannochloropsis gaditana|type=polypeptide|length=100bp
MGIYKALAGQHQGSTSGIFQTVVLVNNVRLIGKDSGSLKMNADDIGHIRS
LAKDQPRVLDVLGRSLAPSIFGHDFIKKALILQAVSGVEKSLVRPRCPFP
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mRNA from alignment at CM002455.1:1345116..1345697-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna538 ID=rna538|Name=rna538|organism=Nannochloropsis gaditana|type=mRNA|length=582bp|location=Sequence derived from alignment at CM002455.1:1345116..1345697- (Nannochloropsis gaditana)
TCCCGCCTTCCCCTCTCGCCAGGACAAAGTCAAGCCCGGTGACCGGGTCC
AGTGCATGGGAATCTACAAGGCCCTCGCGGGGCAGCACCAGGTGACCGTC
CCTCCCTCCCTCCCTCCTTCCCTTCCTGCCTGCTACCATCTCCTGCCCTT
CCTCCCTCGAACTGCTCCTGATCCCGGTGCTTTTCTCCGCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCCCCTCCCCCAGGGATCCACCTCGGGCAT
TTTTCAGACCGTGGTCCTGGTCAACAACGTCCGGCTCATTGGGAAAGACT
CGGGCTCGCTGAAAATGAATGCCGACGACATAGGCCACATCCGCTCGCTC
GCCAAAGACCAGCCTCGTGTGCTCGACGTCCTTGGTTCGTCCCCCCCCTC
CCTCCTTCCCTTCCTGCCTCCCTTCTTCCCCCCGCCCCCTGTAATGTTTT
TCTCTTTCCCCCTCCCTAGGCCGTTCTCTGGCACCATCCATATTCGGGCA
CGATTTTATCAAAAAAGCGTTGATCCTCCAGGCAGTCAGCGGCGTGGAAA
AGAGTCTGGTGAGACCTCGTTGTCCATTCCCT
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Coding sequence (CDS) from alignment at CM002455.1:1345116..1345697-

>rna538 ID=rna538|Name=rna538|organism=Nannochloropsis gaditana|type=CDS|length=900bp|location=Sequence derived from alignment at CM002455.1:1345116..1345697- (Nannochloropsis gaditana)
GCCGTTCTCTGGCACCATCCATATTCGGGCACGATTTTATCAAAAAAGCG
TTGATCCTCCAGGCAGTCAGCGGCGTGGAAAAGAGTCTGGTGAGACCTCG
TTGTCCATTCCCTGGATCCACCTCGGGCATTTTTCAGACCGTGGTCCTGG
TCAACAACGTCCGGCTCATTGGGAAAGACTCGGGCTCGCTGAAAATGAAT
GCCGACGACATAGGCCACATCCGCTCGCTCGCCAAAGACCAGCCTCGTGT
GCTCGACGTCCTTGATGGGAATCTACAAGGCCCTCGCGGGGCAGCACCAG
GCCGTTCTCTGGCACCATCCATATTCGGGCACGATTTTATCAAAAAAGCG
TTGATCCTCCAGGCAGTCAGCGGCGTGGAAAAGAGTCTGGTGAGACCTCG
TTGTCCATTCCCTGGATCCACCTCGGGCATTTTTCAGACCGTGGTCCTGG
TCAACAACGTCCGGCTCATTGGGAAAGACTCGGGCTCGCTGAAAATGAAT
GCCGACGACATAGGCCACATCCGCTCGCTCGCCAAAGACCAGCCTCGTGT
GCTCGACGTCCTTGATGGGAATCTACAAGGCCCTCGCGGGGCAGCACCAG
GCCGTTCTCTGGCACCATCCATATTCGGGCACGATTTTATCAAAAAAGCG
TTGATCCTCCAGGCAGTCAGCGGCGTGGAAAAGAGTCTGGTGAGACCTCG
TTGTCCATTCCCTGGATCCACCTCGGGCATTTTTCAGACCGTGGTCCTGG
TCAACAACGTCCGGCTCATTGGGAAAGACTCGGGCTCGCTGAAAATGAAT
GCCGACGACATAGGCCACATCCGCTCGCTCGCCAAAGACCAGCCTCGTGT
GCTCGACGTCCTTGATGGGAATCTACAAGGCCCTCGCGGGGCAGCACCAG
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Synonyms
Publications