EWM30135.1, cds538 (CDS) Nannochloropsis gaditana

Overview
NameEWM30135.1
Unique Namecds538
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:1345607..1345642 -
Alignment locationCM002455.1:1345314..1345464 -
Alignment locationCM002455.1:1345116..1345228 -

Link to JBrowse

Properties
Property NameValue
Start range1345116
Start range.
Protein idEWM30135.1
Productdna replication licensing factor mcm3-like protein
Partialtrue
Orig transcript idgnl|cribi|Naga_102881g1.7068.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1345607..1345642 -
CM002455.1supercontigCM002455.1:1345314..1345464 -
CM002455.1supercontigCM002455.1:1345116..1345228 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0000166nucleotide binding
GO:0003677DNA binding
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0007049cell cycle
GO:0006950response to stress
GO:0006259DNA metabolic process
GO:0009058biosynthetic process
GO:0016043cellular component organization
GO:0006260DNA replication
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR001208MCM_DNA-dep_ATPase
Homology
BLAST of EWM30135.1 vs. NCBI_GenBank
Match: gi|585112788|gb|EWM30135.1| (dna replication licensing factor mcm3-like protein, partial [Nannochloropsis gaditana])

HSP 1 Score: 202.986 bits (515), Expect = 4.176e-66
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0
Query:    1 MGIYKALAGQHQGSTSGIFQTVVLVNNVRLIGKDSGSLKMNADDIGHIRSLAKDQPRVLDVLGRSLAPSIFGHDFIKKALILQAVSGVEKSLVRPRCPFP 100
            MGIYKALAGQHQGSTSGIFQTVVLVNNVRLIGKDSGSLKMNADDIGHIRSLAKDQPRVLDVLGRSLAPSIFGHDFIKKALILQAVSGVEKSLVRPRCPFP
Sbjct:    1 MGIYKALAGQHQGSTSGIFQTVVLVNNVRLIGKDSGSLKMNADDIGHIRSLAKDQPRVLDVLGRSLAPSIFGHDFIKKALILQAVSGVEKSLVRPRCPFP 100          
BLAST of EWM30135.1 vs. NCBI_GenBank
Match: gi|298710225|emb|CBJ26300.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 101.293 bits (251), Expect = 6.489e-23
Identity = 48/91 (52.75%), Postives = 71/91 (78.02%), Query Frame = 0
Query:    2 GIYKALAGQHQGSTSGIFQTVVLVNNVRLIGKDSGSLKMNADDIGHIRSLAKDQPRVLDVLGRSLAPSIFGHDFIKKALILQAVSGVEKSL 92
            G+Y+A+ G   GSTSG+F+T+++ NNV ++GKD GS++M   DI +IR +A ++  VL++L +SLAPSI+GHD IKKAL+LQ + G EK+L
Sbjct:  259 GMYRAIGGASNGSTSGVFRTLIIANNVAILGKDVGSVQMTPTDIKNIREIA-ERDDVLELLAKSLAPSIYGHDHIKKALVLQLLGGEEKNL 348          
BLAST of EWM30135.1 vs. NCBI_GenBank
Match: gi|731405046|ref|XP_010655644.1| (PREDICTED: DNA replication licensing factor MCM3 homolog 2 [Vitis vinifera] >gi|1104521968|ref|XP_019078279.1| PREDICTED: DNA replication licensing factor MCM3 homolog 2 [Vitis vinifera] >gi|297740670|emb|CBI30852.3| unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 93.2041 bits (230), Expect = 4.230e-20
Identity = 45/92 (48.91%), Postives = 70/92 (76.09%), Query Frame = 0
Query:    1 MGIYKALAGQHQGSTSGIFQTVVLVNNVRLIGKDSGSLKMNADDIGHIRSLAKDQPRVLDVLGRSLAPSIFGHDFIKKALILQAVSGVEKSL 92
            +GIYKA+ G+ +GS +G+F+TV++ NNV L+ K++ +     +D+ HI+S+A ++   LD+LG SLAPSI+GH +IKKA+IL  + GVEK+L
Sbjct:  234 VGIYKAIPGKSKGSVNGVFRTVLIANNVSLLNKEANTPIYTPEDLKHIKSIA-ERDDTLDLLGNSLAPSIYGHSWIKKAVILLMLGGVEKNL 324          
BLAST of EWM30135.1 vs. NCBI_GenBank
Match: gi|1191677122|gb|OTG29086.1| (putative DNA replication licensing factor [Helianthus annuus])

HSP 1 Score: 92.0485 bits (227), Expect = 1.242e-19
Identity = 42/92 (45.65%), Postives = 69/92 (75.00%), Query Frame = 0
Query:    1 MGIYKALAGQHQGSTSGIFQTVVLVNNVRLIGKDSGSLKMNADDIGHIRSLAKDQPRVLDVLGRSLAPSIFGHDFIKKALILQAVSGVEKSL 92
            +G+YKA+ G+ QGS +G+F+TV++ NNV L+ K++ +   +++D+ HI+ +A ++    D+L RSLAPSI+GH +IKKA+IL  + G EK+L
Sbjct:  233 VGVYKAIPGKSQGSVNGVFRTVLIANNVSLLNKEANAPVYSSEDLKHIKKIA-EREDTFDLLSRSLAPSIYGHSWIKKAVILLMLGGTEKNL 323          
BLAST of EWM30135.1 vs. NCBI_GenBank
Match: gi|764551560|ref|XP_011460181.1| (PREDICTED: DNA replication licensing factor MCM3 [Fragaria vesca subsp. vesca])

HSP 1 Score: 91.6633 bits (226), Expect = 1.525e-19
Identity = 45/92 (48.91%), Postives = 70/92 (76.09%), Query Frame = 0
Query:    1 MGIYKALAGQHQGSTSGIFQTVVLVNNVRLIGKDSGSLKMNADDIGHIRSLAKDQPRVLDVLGRSLAPSIFGHDFIKKALILQAVSGVEKSL 92
            +GIYKAL G+ +GS +G+F+TV++ NNV  + K++ S + NA+D+ +I+ +A ++    D+LG SLAPSI+GH +IKKA+IL  + GVEK+L
Sbjct:  229 VGIYKALPGKSKGSVNGVFRTVLIANNVTQLNKEAQSPQYNAEDLTNIKKIA-ERDDAFDLLGNSLAPSIYGHSWIKKAVILLMLGGVEKNL 319          
BLAST of EWM30135.1 vs. NCBI_GenBank
Match: gi|1162554975|ref|XP_020418662.1| (DNA replication licensing factor MCM3 [Prunus persica] >gi|1139776766|gb|ONI10953.1| hypothetical protein PRUPE_4G078300 [Prunus persica])

HSP 1 Score: 91.6633 bits (226), Expect = 1.620e-19
Identity = 45/93 (48.39%), Postives = 69/93 (74.19%), Query Frame = 0
Query:    1 MGIYKALAGQHQGSTSGIFQTVVLVNNVRLIGKDSGSLKMNADDIGHIRSLAKDQPRVLDVLGRSLAPSIFGHDFIKKALILQAVSGVEKSLV 93
            +GIYKAL G+ +GS +G+F+TV++ NNV L+ K++ +   + DDI +I+ +A D+    D+LG SLAPSI+GH +IKKA+IL  + G+EK+L 
Sbjct:  230 VGIYKALPGKSKGSVNGVFRTVLIANNVSLLNKEANAPIYSPDDISNIKKIA-DRGDTFDLLGNSLAPSIYGHSWIKKAVILLMLGGMEKNLT 321          
BLAST of EWM30135.1 vs. NCBI_GenBank
Match: gi|645237963|ref|XP_008225454.1| (PREDICTED: DNA replication licensing factor MCM3 [Prunus mume])

HSP 1 Score: 91.6633 bits (226), Expect = 1.667e-19
Identity = 45/92 (48.91%), Postives = 69/92 (75.00%), Query Frame = 0
Query:    1 MGIYKALAGQHQGSTSGIFQTVVLVNNVRLIGKDSGSLKMNADDIGHIRSLAKDQPRVLDVLGRSLAPSIFGHDFIKKALILQAVSGVEKSL 92
            +GIYKAL G+ +GS +G+F+TV++ NNV L+ K++ +   + DDI +I+ +A D+    D+LG SLAPSI+GH +IKKA+IL  + G+EK+L
Sbjct:  230 VGIYKALPGKSKGSVNGVFRTVLIANNVSLLNKEANAPIYSPDDISNIKKIA-DRGDTFDLLGNSLAPSIYGHSWIKKAVILLMLGGMEKNL 320          
BLAST of EWM30135.1 vs. NCBI_GenBank
Match: gi|902179511|gb|KNA09372.1| (hypothetical protein SOVF_154180 [Spinacia oleracea])

HSP 1 Score: 91.6633 bits (226), Expect = 1.874e-19
Identity = 43/91 (47.25%), Postives = 70/91 (76.92%), Query Frame = 0
Query:    2 GIYKALAGQHQGSTSGIFQTVVLVNNVRLIGKDSGSLKMNADDIGHIRSLAKDQPRVLDVLGRSLAPSIFGHDFIKKALILQAVSGVEKSL 92
            GIYKAL G+++GS +G+F+T+++ NNV L+ K++ +   +A+D+ +I+ +A D+  + D+LG SLAPSI+GH +IKKA+IL  + G EK+L
Sbjct:  236 GIYKALPGKNKGSVNGVFRTILIANNVTLLNKEANAPIYSAEDLKNIKKIA-DRQDIFDLLGNSLAPSIYGHTWIKKAVILLMLGGTEKNL 325          
BLAST of EWM30135.1 vs. NCBI_GenBank
Match: gi|1026770033|gb|OAE29876.1| (hypothetical protein AXG93_773s1150 [Marchantia polymorpha subsp. ruderalis])

HSP 1 Score: 91.6633 bits (226), Expect = 1.916e-19
Identity = 45/92 (48.91%), Postives = 67/92 (72.83%), Query Frame = 0
Query:    1 MGIYKALAGQHQGSTSGIFQTVVLVNNVRLIGKDSGSLKMNADDIGHIRSLAKDQPRVLDVLGRSLAPSIFGHDFIKKALILQAVSGVEKSL 92
            MGIYKA+  + +GS +G+F+TVV+ NNV  + KD  +    ADD+ +I+ ++K +    D+LG SLAPSI+GH +IKKA++LQ + GVEK+L
Sbjct:  234 MGIYKAVPTKSKGSMNGVFRTVVVANNVSQLNKDINAPVFTADDLKNIKEISK-RSDAFDLLGESLAPSIYGHTWIKKAVVLQLLGGVEKNL 324          
BLAST of EWM30135.1 vs. NCBI_GenBank
Match: gi|571470496|ref|XP_006585032.1| (PREDICTED: DNA replication licensing factor MCM3-like [Glycine max] >gi|571470498|ref|XP_006585033.1| PREDICTED: DNA replication licensing factor MCM3-like [Glycine max] >gi|947093756|gb|KRH42341.1| hypothetical protein GLYMA_08G084400 [Glycine max] >gi|947093757|gb|KRH42342.1| hypothetical protein GLYMA_08G084400 [Glycine max])

HSP 1 Score: 91.2781 bits (225), Expect = 1.985e-19
Identity = 44/92 (47.83%), Postives = 70/92 (76.09%), Query Frame = 0
Query:    1 MGIYKALAGQHQGSTSGIFQTVVLVNNVRLIGKDSGSLKMNADDIGHIRSLAKDQPRVLDVLGRSLAPSIFGHDFIKKALILQAVSGVEKSL 92
            +GIYKALAG+ +GS +G+F+TV++ NNV L+ K++ +   +A+D+ +I+ +A  +    D+L  SLAPSI+GH +IKKA++L  +SGVEK+L
Sbjct:  233 VGIYKALAGKSKGSVNGVFRTVLIANNVSLLNKEANAPIYSAEDVKNIKEIAA-RDDAFDLLSNSLAPSIYGHSWIKKAVVLLMLSGVEKNL 323          
The following BLAST results are available for this feature:
BLAST of EWM30135.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112788|gb|EWM30135.1|4.176e-66100.00dna replication licensing factor mcm3-like protein... [more]
gi|298710225|emb|CBJ26300.1|6.489e-2352.75conserved unknown protein [Ectocarpus siliculosus][more]
gi|731405046|ref|XP_010655644.1|4.230e-2048.91PREDICTED: DNA replication licensing factor MCM3 h... [more]
gi|1191677122|gb|OTG29086.1|1.242e-1945.65putative DNA replication licensing factor [Heliant... [more]
gi|764551560|ref|XP_011460181.1|1.525e-1948.91PREDICTED: DNA replication licensing factor MCM3 [... [more]
gi|1162554975|ref|XP_020418662.1|1.620e-1948.39DNA replication licensing factor MCM3 [Prunus pers... [more]
gi|645237963|ref|XP_008225454.1|1.667e-1948.91PREDICTED: DNA replication licensing factor MCM3 [... [more]
gi|902179511|gb|KNA09372.1|1.874e-1947.25hypothetical protein SOVF_154180 [Spinacia olerace... [more]
gi|1026770033|gb|OAE29876.1|1.916e-1948.91hypothetical protein AXG93_773s1150 [Marchantia po... [more]
gi|571470496|ref|XP_006585032.1|1.985e-1947.83PREDICTED: DNA replication licensing factor MCM3-l... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna538rna538Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications