EWM30135.1, cds538 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM30135.1 vs. NCBI_GenBank
Match: gi|585112788|gb|EWM30135.1| (dna replication licensing factor mcm3-like protein, partial [Nannochloropsis gaditana]) HSP 1 Score: 202.986 bits (515), Expect = 4.176e-66 Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0 Query: 1 MGIYKALAGQHQGSTSGIFQTVVLVNNVRLIGKDSGSLKMNADDIGHIRSLAKDQPRVLDVLGRSLAPSIFGHDFIKKALILQAVSGVEKSLVRPRCPFP 100 MGIYKALAGQHQGSTSGIFQTVVLVNNVRLIGKDSGSLKMNADDIGHIRSLAKDQPRVLDVLGRSLAPSIFGHDFIKKALILQAVSGVEKSLVRPRCPFP Sbjct: 1 MGIYKALAGQHQGSTSGIFQTVVLVNNVRLIGKDSGSLKMNADDIGHIRSLAKDQPRVLDVLGRSLAPSIFGHDFIKKALILQAVSGVEKSLVRPRCPFP 100
BLAST of EWM30135.1 vs. NCBI_GenBank
Match: gi|298710225|emb|CBJ26300.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 101.293 bits (251), Expect = 6.489e-23 Identity = 48/91 (52.75%), Postives = 71/91 (78.02%), Query Frame = 0 Query: 2 GIYKALAGQHQGSTSGIFQTVVLVNNVRLIGKDSGSLKMNADDIGHIRSLAKDQPRVLDVLGRSLAPSIFGHDFIKKALILQAVSGVEKSL 92 G+Y+A+ G GSTSG+F+T+++ NNV ++GKD GS++M DI +IR +A ++ VL++L +SLAPSI+GHD IKKAL+LQ + G EK+L Sbjct: 259 GMYRAIGGASNGSTSGVFRTLIIANNVAILGKDVGSVQMTPTDIKNIREIA-ERDDVLELLAKSLAPSIYGHDHIKKALVLQLLGGEEKNL 348
BLAST of EWM30135.1 vs. NCBI_GenBank
Match: gi|731405046|ref|XP_010655644.1| (PREDICTED: DNA replication licensing factor MCM3 homolog 2 [Vitis vinifera] >gi|1104521968|ref|XP_019078279.1| PREDICTED: DNA replication licensing factor MCM3 homolog 2 [Vitis vinifera] >gi|297740670|emb|CBI30852.3| unnamed protein product, partial [Vitis vinifera]) HSP 1 Score: 93.2041 bits (230), Expect = 4.230e-20 Identity = 45/92 (48.91%), Postives = 70/92 (76.09%), Query Frame = 0 Query: 1 MGIYKALAGQHQGSTSGIFQTVVLVNNVRLIGKDSGSLKMNADDIGHIRSLAKDQPRVLDVLGRSLAPSIFGHDFIKKALILQAVSGVEKSL 92 +GIYKA+ G+ +GS +G+F+TV++ NNV L+ K++ + +D+ HI+S+A ++ LD+LG SLAPSI+GH +IKKA+IL + GVEK+L Sbjct: 234 VGIYKAIPGKSKGSVNGVFRTVLIANNVSLLNKEANTPIYTPEDLKHIKSIA-ERDDTLDLLGNSLAPSIYGHSWIKKAVILLMLGGVEKNL 324
BLAST of EWM30135.1 vs. NCBI_GenBank
Match: gi|1191677122|gb|OTG29086.1| (putative DNA replication licensing factor [Helianthus annuus]) HSP 1 Score: 92.0485 bits (227), Expect = 1.242e-19 Identity = 42/92 (45.65%), Postives = 69/92 (75.00%), Query Frame = 0 Query: 1 MGIYKALAGQHQGSTSGIFQTVVLVNNVRLIGKDSGSLKMNADDIGHIRSLAKDQPRVLDVLGRSLAPSIFGHDFIKKALILQAVSGVEKSL 92 +G+YKA+ G+ QGS +G+F+TV++ NNV L+ K++ + +++D+ HI+ +A ++ D+L RSLAPSI+GH +IKKA+IL + G EK+L Sbjct: 233 VGVYKAIPGKSQGSVNGVFRTVLIANNVSLLNKEANAPVYSSEDLKHIKKIA-EREDTFDLLSRSLAPSIYGHSWIKKAVILLMLGGTEKNL 323
BLAST of EWM30135.1 vs. NCBI_GenBank
Match: gi|764551560|ref|XP_011460181.1| (PREDICTED: DNA replication licensing factor MCM3 [Fragaria vesca subsp. vesca]) HSP 1 Score: 91.6633 bits (226), Expect = 1.525e-19 Identity = 45/92 (48.91%), Postives = 70/92 (76.09%), Query Frame = 0 Query: 1 MGIYKALAGQHQGSTSGIFQTVVLVNNVRLIGKDSGSLKMNADDIGHIRSLAKDQPRVLDVLGRSLAPSIFGHDFIKKALILQAVSGVEKSL 92 +GIYKAL G+ +GS +G+F+TV++ NNV + K++ S + NA+D+ +I+ +A ++ D+LG SLAPSI+GH +IKKA+IL + GVEK+L Sbjct: 229 VGIYKALPGKSKGSVNGVFRTVLIANNVTQLNKEAQSPQYNAEDLTNIKKIA-ERDDAFDLLGNSLAPSIYGHSWIKKAVILLMLGGVEKNL 319
BLAST of EWM30135.1 vs. NCBI_GenBank
Match: gi|1162554975|ref|XP_020418662.1| (DNA replication licensing factor MCM3 [Prunus persica] >gi|1139776766|gb|ONI10953.1| hypothetical protein PRUPE_4G078300 [Prunus persica]) HSP 1 Score: 91.6633 bits (226), Expect = 1.620e-19 Identity = 45/93 (48.39%), Postives = 69/93 (74.19%), Query Frame = 0 Query: 1 MGIYKALAGQHQGSTSGIFQTVVLVNNVRLIGKDSGSLKMNADDIGHIRSLAKDQPRVLDVLGRSLAPSIFGHDFIKKALILQAVSGVEKSLV 93 +GIYKAL G+ +GS +G+F+TV++ NNV L+ K++ + + DDI +I+ +A D+ D+LG SLAPSI+GH +IKKA+IL + G+EK+L Sbjct: 230 VGIYKALPGKSKGSVNGVFRTVLIANNVSLLNKEANAPIYSPDDISNIKKIA-DRGDTFDLLGNSLAPSIYGHSWIKKAVILLMLGGMEKNLT 321
BLAST of EWM30135.1 vs. NCBI_GenBank
Match: gi|645237963|ref|XP_008225454.1| (PREDICTED: DNA replication licensing factor MCM3 [Prunus mume]) HSP 1 Score: 91.6633 bits (226), Expect = 1.667e-19 Identity = 45/92 (48.91%), Postives = 69/92 (75.00%), Query Frame = 0 Query: 1 MGIYKALAGQHQGSTSGIFQTVVLVNNVRLIGKDSGSLKMNADDIGHIRSLAKDQPRVLDVLGRSLAPSIFGHDFIKKALILQAVSGVEKSL 92 +GIYKAL G+ +GS +G+F+TV++ NNV L+ K++ + + DDI +I+ +A D+ D+LG SLAPSI+GH +IKKA+IL + G+EK+L Sbjct: 230 VGIYKALPGKSKGSVNGVFRTVLIANNVSLLNKEANAPIYSPDDISNIKKIA-DRGDTFDLLGNSLAPSIYGHSWIKKAVILLMLGGMEKNL 320
BLAST of EWM30135.1 vs. NCBI_GenBank
Match: gi|902179511|gb|KNA09372.1| (hypothetical protein SOVF_154180 [Spinacia oleracea]) HSP 1 Score: 91.6633 bits (226), Expect = 1.874e-19 Identity = 43/91 (47.25%), Postives = 70/91 (76.92%), Query Frame = 0 Query: 2 GIYKALAGQHQGSTSGIFQTVVLVNNVRLIGKDSGSLKMNADDIGHIRSLAKDQPRVLDVLGRSLAPSIFGHDFIKKALILQAVSGVEKSL 92 GIYKAL G+++GS +G+F+T+++ NNV L+ K++ + +A+D+ +I+ +A D+ + D+LG SLAPSI+GH +IKKA+IL + G EK+L Sbjct: 236 GIYKALPGKNKGSVNGVFRTILIANNVTLLNKEANAPIYSAEDLKNIKKIA-DRQDIFDLLGNSLAPSIYGHTWIKKAVILLMLGGTEKNL 325
BLAST of EWM30135.1 vs. NCBI_GenBank
Match: gi|1026770033|gb|OAE29876.1| (hypothetical protein AXG93_773s1150 [Marchantia polymorpha subsp. ruderalis]) HSP 1 Score: 91.6633 bits (226), Expect = 1.916e-19 Identity = 45/92 (48.91%), Postives = 67/92 (72.83%), Query Frame = 0 Query: 1 MGIYKALAGQHQGSTSGIFQTVVLVNNVRLIGKDSGSLKMNADDIGHIRSLAKDQPRVLDVLGRSLAPSIFGHDFIKKALILQAVSGVEKSL 92 MGIYKA+ + +GS +G+F+TVV+ NNV + KD + ADD+ +I+ ++K + D+LG SLAPSI+GH +IKKA++LQ + GVEK+L Sbjct: 234 MGIYKAVPTKSKGSMNGVFRTVVVANNVSQLNKDINAPVFTADDLKNIKEISK-RSDAFDLLGESLAPSIYGHTWIKKAVVLQLLGGVEKNL 324
BLAST of EWM30135.1 vs. NCBI_GenBank
Match: gi|571470496|ref|XP_006585032.1| (PREDICTED: DNA replication licensing factor MCM3-like [Glycine max] >gi|571470498|ref|XP_006585033.1| PREDICTED: DNA replication licensing factor MCM3-like [Glycine max] >gi|947093756|gb|KRH42341.1| hypothetical protein GLYMA_08G084400 [Glycine max] >gi|947093757|gb|KRH42342.1| hypothetical protein GLYMA_08G084400 [Glycine max]) HSP 1 Score: 91.2781 bits (225), Expect = 1.985e-19 Identity = 44/92 (47.83%), Postives = 70/92 (76.09%), Query Frame = 0 Query: 1 MGIYKALAGQHQGSTSGIFQTVVLVNNVRLIGKDSGSLKMNADDIGHIRSLAKDQPRVLDVLGRSLAPSIFGHDFIKKALILQAVSGVEKSL 92 +GIYKALAG+ +GS +G+F+TV++ NNV L+ K++ + +A+D+ +I+ +A + D+L SLAPSI+GH +IKKA++L +SGVEK+L Sbjct: 233 VGIYKALAGKSKGSVNGVFRTVLIANNVSLLNKEANAPIYSAEDVKNIKEIAA-RDDAFDLLSNSLAPSIYGHSWIKKAVVLLMLSGVEKNL 323 The following BLAST results are available for this feature:
BLAST of EWM30135.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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