rna5376, rna5376 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5376
Unique Name	rna5376
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1610
Alignment location	CM002465.1:838063..841655 -

Link to JBrowse

Properties


Property Name	Value
Product	transcription factor iiib 90 kda subunit
Orig transcript id	gnl\|cribi\|Naga_100135g10.5860.mrna
Orig protein id	gnl\|cribi\|Naga_100135g10.5860
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002465.1	supercontig	CM002465.1:838063..841655 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100135g10	gene5197	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25303.1	cds5363	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5376	rna5376-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002465.1:838063..841655-
coding sequence from alignment at CM002465.1:838063..841655-

mRNA sequence

>rna5376 ID=rna5376|Name=rna5376|organism=Nannochloropsis gaditana|type=mRNA|length=1610bp
CCGTACCCTCCCCTTCAAACAGGATAAGGCCCTGGAATAATGCCGTTGCT
CTCGCCTTCTTCTCCATCATCTGGCACTTCTTTGATTGAAAATGTGTCTA
TGGAGGTCACCTCTCACTCGCATCGGCTTGAGAAGGACATAAATGTCCTT
TTCCGGACAGCGTTACACGCCAAGCGAAGCCCCCGGCCCCTGCTCTCCGC
TTCCTTTGGACAGCTCCTTGTTGACATCCTTAAGCACCATCTACCTGCCC
TTTTGGAGCGAACACGCAAGTTTGCCAATCAGGCATCCTGCAATACCCTG
ATCGGCCATTTATCTGCCGCATGCTCCGCTTCTCACGAGAACAAAGTAGG
GGCAGAGGAGATTAAAGGCCGTTGTCGCCGCGCGCGGTGCCTGTACATTA
TGCAGCACGAATGGGCAGTGATCGGACCTGGGGATAAAATAGATTACATA
GTCAGCGACGACGCCACAACGTGCCATTTGGTGGGCATTCGGGAACCGTG
TACAGGTGTTGTGGGTCTGGCCCATGTCGACGCTGTGGAGGTGGTGCCAG
ATTTGGTGGCCGTTGAAGACGCCGTCCAGAAAGAAAGCATGCTGCGGTCG
GAGAGCCATGCTGGGAATGCCCTAGGTGGCTTTCGACGGCCGACTGAGCC
GCTAACCTTGGATCTCTTTCTGGTCGGGGGCTACGAGGGCGACAGCGAGG
GCGGACTCTTGACGGCTGCGATCCTGCAGCATTTTCAATCCACGTCTGTG
CACAAGTATAACCTACAGCTGGCACTTGTTTCCTCTCTCAACACGTGCAC
ACTCCCCAGTGTTTTTTCTTCCCCCTCTATGACGCCTTCGGTCCCCGCTC
CCCTCTGCCGTTCCCTGGGCTTTGTAATAGAGCCCCCCCGTAACCCTGCC
GCAGCGGCCCCCTCCAAAGCCAGTGGATCCTGTGATCTTTTTGGGGCGCA
CGTGCTCACGGGAGACGTACCAGAGAGCTTGCGGGGTCCCATGCGGACGC
TTCGTGCCCTCCGCCTTTGGGGAAGAGGGTCTCGTAGACTCGTGCAAGTC
CGGCTGGCGCACTCTCCGGGAGAAGCCGGAGTGGCGGCGTTCGATCAGGA
GGAAATCGCGAACTCCTCACGATGTTCTCGGCCTCAACCCAAGTCTTGCC
CCTCTTTCTCCTGTCCTCCCTCCGCCCCGTCCGCCTCCAATTCCGAGGTC
AGCATCGTCATCAACCCCTTCCGGTTCCGTTGTTCGGAAGACATCAAGGC
CCTGGCCTGCCTGGAGGACGAGGCGCTCAAATTGGAAACGTCCACTTCTC
CGGCCATCGAATCCCCGTCCTTTGTCTCGGACATTCGGGCAGTCTTGAAA
ATGAATCAAACGGCTTTTCCCGAAGATTTCTTCGGGCCACGTGTCTCGCA
ACCGTTACTGGTACCTCTGCACGCGGTTGAGGCGGCAACGCTGCTGACAG
CGGAGAGTAAAGGAGGGGAAGAGAGAAGGGGAAACAGAAGAATAAATGTG
ACATGAAACTATGCAGATACCTCTGGAGTCGTCCTGCTTAATCAAAGTAG
CCTGCATTCGACGCGAGTATACAAACACTCTGTGAATAAGCGCGATGTAG
TATGTCAACA

protein sequence of rna5376

>rna5376-protein ID=rna5376-protein|Name=rna5376|organism=Nannochloropsis gaditana|type=polypeptide|length=684bp
MQHMHRKLPSVCLLGPDDNHIHPVGEARFLPMEQILRCPNPDCRGTDLEY
SEPDGATICMACHTIVEENAIVSSVEFNENNAGGASTVVGQFVGPEMTKA
YSSAGRGRRRFYTRDSRDTTLNNGRRAIQQVVSQLRLRQAFVDRACRLFR
TAVERNFVQGRKTMCVVAVCLYMVCREDNSPHMLIDFSDAVQINVYVLGH
AFLKFKQLTGLNLAVIDPSIYIHRFAARLELGSEQEQTQVSQLALRLVAS
MQRDWIQAGRRPSGICGAALYLSAVYHEKPRTYKDVGRIVRVSPDTIKKR
VDEFERTPISGMMSREELAEMAISDFEDLTRRQGPGSYLGEADPPSFTRA
LKMKEAQALQEGKKDFEERNGPGAKEQERLATLKDSSTPSGPGTVSAAAA
AVAAVAAAAATIGSKRGGLCRGRGRGASVATIRSSKRVRRSEPLEEIAQE
EDPLPQEEDEDEEGGVGDFDGGLHKELMDQLLDEEEEKAKKIAVAEAAAA
GCQAPGRQQHGGKKGGEIALSESGVEALIGDGVLQDEAKETDDTAQYIRS
NAEVEKLSKVWHEVHKGYLEKQARKKAEEEAVKKRAEEDFNYRPPGQSNQ
RRKAAAAAAAASVVSGAQQGAGEGGAITPAGPERSPAEIAVSNHLAKKRI
SKKINYEAVKMLGNDDDLDAHPPELEAMMSQHQA

mRNA from alignment at CM002465.1:838063..841655-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5376 ID=rna5376|Name=rna5376|organism=Nannochloropsis gaditana|type=mRNA|length=3593bp|location=Sequence derived from alignment at CM002465.1:838063..841655- (Nannochloropsis gaditana)
CGAAGCCAAAAATGCATTCAATTGTGTTACAACTGACGATAATTTGGCCG
TTTTGTTTGTCTTTGCGTCGACTGGAGACTATTTCGGTGGTTATCATAAT
CGACGAGTCGAAAGGGACGTCGTGAGTCGAAGGGGTAATAAGAAAGACAC
ATAGAAAAAAAAAGGTTCCAATTCGCAAGATAAATGGGCAAACATGTGAA
TATGAAAGAGAAATGAAATTCGTGGCGACTTGAATGTAAGGGGAATTGAG
GATTTTGTAGCTCCATGCTTCTTGTCACACAAGGTTCAACAAATCTCGGA
TCAACAAGTGTTAAATTTAAGATCGCCCCTTACGTACTTTGATAAAGAGT
GATCAATGCAACACATGCACAGGAAACTCCCCTCCGTATGCCTACTAGGA
CCTGACGACAATCACATTCACCCTGTTGGTGAAGCTCGATTCCTGCCAAT
GGAGCAGATCCTCCGGTGCCCTAATCCCGATTGTCGGGGGACAGACCTGG
AATACAGCGAACCTGATGGCGCTACCATTTGTATGGCCTGCCATACCATC
GTGGAGGAAAATGCAATCGTCTCGTCCGTCGAGTTTAACGAGAATAACGC
CGGAGGGGCGTCGACTGTTGTGGGTCAATTCGTGGGCCCGGAGATGACCA
AAGCCTACAGCTCCGCAGGGCGTGGTCGCCGTCGATTCTATACACGCGAC
TCCCGGGACACCACTTTAAACAACGGTCGCCGCGCCATCCAGCAGGTCGT
ATCTCAGCTTCGACTCCGCCAAGCTTTTGTGGACCGGGCCTGCCGCCTCT
TCCGGACCGCCGTGGAGCGGAATTTCGTTCAAGGCCGGAAAACCATGTGC
GTGGTCGCCGTCTGTTTGTACATGGTGTGCCGGGAGGACAACTCCCCGCA
CATGCTCATCGACTTCTCGGACGCCGTGCAAATCAACGTGTACGTCCTGG
GCCACGCCTTCCTCAAGTTCAAGCAGCTGACCGGTCTCAACCTGGCTGTT
ATCGATCCGTCCATCTACATCCACCGATTCGCGGCCCGTCTTGAGCTTGG
CAGCGAGCAAGAACAAACCCAAGTCTCGCAACTCGCCCTTCGTCTTGTCG
CGTCCATGCAACGCGATTGGATTCAGGCTGGACGCCGGCCCTCGGGCATT
TGTGGAGCTGCCCTTTATCTCTCGGCAGTTTACCACGAAAAACCCCGCAC
GTACAAGGACGTCGGGCGGATCGTCCGAGTCTCGCCAGATACAATCAAGA
AACGCGTGGACGAATTCGAACGCACTCCGATTTCAGGGATGATGTCCCGG
GAAGAGTTGGCGGAGATGGCGATCTCGGACTTTGAGGACCTGACACGGAG
GCAGGGGCCAGGGTCCTACTTGGGGGAGGCGGACCCGCCCTCCTTCACGC
GAGCGCTGAAAATGAAGGAAGCCCAAGCATTGCAGGAAGGGAAAAAGGAT
TTTGAGGAGAGGAATGGGCCCGGGGCCAAAGAGCAGGAGAGGTTAGCGAC
GTTAAAAGACTCTTCTACCCCGTCGGGCCCTGGTACTGTCAGTGCCGCCG
CTGCCGCAGTCGCTGCTGTGGCTGCCGCCGCTGCCACGATAGGAAGCAAA
AGAGGCGGGCTTTGCCGTGGGAGGGGACGCGGAGCAAGTGTAGCCACGAT
ACGGAGCAGCAAACGAGTGCGGAGGTCGGAGCCTCTCGAAGAAATTGCGC
AGGAAGAGGACCCTCTCCCTCAGGAAGAAGACGAGGATGAAGAAGGTGGG
GTGGGAGATTTTGACGGGGGGTTGCACAAGGAGCTGATGGATCAGTTGTT
GGATGAGGAAGAGGAGAAAGCGAAGAAGATCGCGGTGGCAGAAGCGGCAG
CGGCGGGATGTCAGGCACCTGGTCGTCAACAGCATGGGGGAAAGAAGGGC
GGAGAGATAGCTTTGTCAGAAAGCGGCGTTGAAGCGCTTATAGGTGATGG
AGTACTGCAGGACGAGGCAAAAGAAACGGATGATACGGCGCAGTACATTC
GGTCGAATGCTGAGGTAGAGAAATTGAGCAAGGTCTGGCATGAAGTCCAC
AAAGGATATTTGGAAAAGCAAGCACGAAAGAAGGCGGAGGAGGAAGCTGT
GAAAAAGAGAGCAGAGGAAGACTTTAATTACAGGCCACCGGGCCAAAGCA
ATCAGAGAAGGAAAGCAGCAGCGGCGGCAGCGGCGGCGTCTGTGGTTTCA
GGAGCGCAACAAGGAGCAGGGGAGGGAGGTGCCATTACACCAGCAGGGCC
CGAAAGGTCCCCTGCTGAGATCGCCGTGTCTAACCATTTGGCGAAGAAGC
GCATTTCTAAGAAGATCAACTACGAAGCTGTGAAAATGCTGGGTAATGAT
GATGACTTGGACGCGCATCCTCCAGAATTAGAGGCAATGATGTCTCAGCA
TCAAGCGTAAGTCTAAAGACGTCAACTCATTTTGCATGAGAAAGCGCGTT
TTGTATCTGTAAAAATTAAGTGTTATACAAGAGATTAAAGAAAGCACAAG
AAAAGGCTATATTCTTATGTTATCTGTCCGAGACGAATGCCCAACTGCAG
AGATTATTGATCACCAGTAGAATATTCAGTGTCAGATCCAAGCATGAAAC
AGCGAAGATGATGACACGGACATGTCATGTGGGGAATTCTTTCTTTGATC
TACTATCTGCTCTTCGTAGGGGGGAAGAGCAGGCGTATCGCAGGCGTACC
TCCTTTGAAAAGCGTGAGCCTTGAGTCTTCCAGCTTATAGCTCCATAGAT
ATGTCGCGCCCGAGGAAATTGACATGGCGCAATAATTGTGAAAGGTGCGC
AGGATCCTTCCACAAATGTTGGAACCGTGCTACTATAGATTGTATGAGTT
TACGCCACTGATTTTACGCTATTGTTGCTTCTCCGCTGGATCTTTCACAC
CTATCAACATTATATTGGAATGATTTGTGACAGATATTCGAACATTGTAC
CCGAGCACAGGTGCCTTCGATGATTTCCTTTGGCAACCGTGGGCTATTTT
TCGTTTCTGCCTGTACATGTGCAAACTCGCAAACCCATTAGTCCTTCTGC
CCGTAGCCATGTCTGCGAGCTTAATGATATAAAGAATAGTATACTAATAC
GGTCTATACTCAAAGACAGTACGACTTGAGAAGAAAAGTTTTCACAGAGT
TCCAAAGTGTACAGCATTGCATGGGAAATACGTGTCAGCTGTGAATCTGC
AACTCACACTGCTGCTCTCTGAGACACAACCGGGCCAATTGCGAGAAGTG
GACTGGTGTCCTGAGGCGGTGGACGAAATCGGCTAACGCAAGTTTGTGTT
CAGAACTTCTCATCGTTCTGCTGGACTATTGGCAAGACTTCGTATAGAAT
TGCGTCGTTTCGTGATTTAGTCCTTCATATTGCATCCCTACGGAGGGAGG
AGATACGAGATGTCAGTATTGAAGGCAGTATAGTGTCAGTCTTTGAACCG
GCGCTCCGTCGTGCAATGCTTCAATAAAATATGAAAACCTTGCATGCTCA
GGAATGAAAAGATTGACGAAAGTTAGTCCTGTGATATTCCTGGAGAAAAC
GCAAACATACGGAAAGACCAATAACATACAACAAAACAGGGGA

Coding sequence (CDS) from alignment at CM002465.1:838063..841655-

>rna5376 ID=rna5376|Name=rna5376|organism=Nannochloropsis gaditana|type=CDS|length=2055bp|location=Sequence derived from alignment at CM002465.1:838063..841655- (Nannochloropsis gaditana)
ATGCAACACATGCACAGGAAACTCCCCTCCGTATGCCTACTAGGACCTGA
CGACAATCACATTCACCCTGTTGGTGAAGCTCGATTCCTGCCAATGGAGC
AGATCCTCCGGTGCCCTAATCCCGATTGTCGGGGGACAGACCTGGAATAC
AGCGAACCTGATGGCGCTACCATTTGTATGGCCTGCCATACCATCGTGGA
GGAAAATGCAATCGTCTCGTCCGTCGAGTTTAACGAGAATAACGCCGGAG
GGGCGTCGACTGTTGTGGGTCAATTCGTGGGCCCGGAGATGACCAAAGCC
TACAGCTCCGCAGGGCGTGGTCGCCGTCGATTCTATACACGCGACTCCCG
GGACACCACTTTAAACAACGGTCGCCGCGCCATCCAGCAGGTCGTATCTC
AGCTTCGACTCCGCCAAGCTTTTGTGGACCGGGCCTGCCGCCTCTTCCGG
ACCGCCGTGGAGCGGAATTTCGTTCAAGGCCGGAAAACCATGTGCGTGGT
CGCCGTCTGTTTGTACATGGTGTGCCGGGAGGACAACTCCCCGCACATGC
TCATCGACTTCTCGGACGCCGTGCAAATCAACGTGTACGTCCTGGGCCAC
GCCTTCCTCAAGTTCAAGCAGCTGACCGGTCTCAACCTGGCTGTTATCGA
TCCGTCCATCTACATCCACCGATTCGCGGCCCGTCTTGAGCTTGGCAGCG
AGCAAGAACAAACCCAAGTCTCGCAACTCGCCCTTCGTCTTGTCGCGTCC
ATGCAACGCGATTGGATTCAGGCTGGACGCCGGCCCTCGGGCATTTGTGG
AGCTGCCCTTTATCTCTCGGCAGTTTACCACGAAAAACCCCGCACGTACA
AGGACGTCGGGCGGATCGTCCGAGTCTCGCCAGATACAATCAAGAAACGC
GTGGACGAATTCGAACGCACTCCGATTTCAGGGATGATGTCCCGGGAAGA
GTTGGCGGAGATGGCGATCTCGGACTTTGAGGACCTGACACGGAGGCAGG
GGCCAGGGTCCTACTTGGGGGAGGCGGACCCGCCCTCCTTCACGCGAGCG
CTGAAAATGAAGGAAGCCCAAGCATTGCAGGAAGGGAAAAAGGATTTTGA
GGAGAGGAATGGGCCCGGGGCCAAAGAGCAGGAGAGGTTAGCGACGTTAA
AAGACTCTTCTACCCCGTCGGGCCCTGGTACTGTCAGTGCCGCCGCTGCC
GCAGTCGCTGCTGTGGCTGCCGCCGCTGCCACGATAGGAAGCAAAAGAGG
CGGGCTTTGCCGTGGGAGGGGACGCGGAGCAAGTGTAGCCACGATACGGA
GCAGCAAACGAGTGCGGAGGTCGGAGCCTCTCGAAGAAATTGCGCAGGAA
GAGGACCCTCTCCCTCAGGAAGAAGACGAGGATGAAGAAGGTGGGGTGGG
AGATTTTGACGGGGGGTTGCACAAGGAGCTGATGGATCAGTTGTTGGATG
AGGAAGAGGAGAAAGCGAAGAAGATCGCGGTGGCAGAAGCGGCAGCGGCG
GGATGTCAGGCACCTGGTCGTCAACAGCATGGGGGAAAGAAGGGCGGAGA
GATAGCTTTGTCAGAAAGCGGCGTTGAAGCGCTTATAGGTGATGGAGTAC
TGCAGGACGAGGCAAAAGAAACGGATGATACGGCGCAGTACATTCGGTCG
AATGCTGAGGTAGAGAAATTGAGCAAGGTCTGGCATGAAGTCCACAAAGG
ATATTTGGAAAAGCAAGCACGAAAGAAGGCGGAGGAGGAAGCTGTGAAAA
AGAGAGCAGAGGAAGACTTTAATTACAGGCCACCGGGCCAAAGCAATCAG
AGAAGGAAAGCAGCAGCGGCGGCAGCGGCGGCGTCTGTGGTTTCAGGAGC
GCAACAAGGAGCAGGGGAGGGAGGTGCCATTACACCAGCAGGGCCCGAAA
GGTCCCCTGCTGAGATCGCCGTGTCTAACCATTTGGCGAAGAAGCGCATT
TCTAAGAAGATCAACTACGAAGCTGTGAAAATGCTGGGTAATGATGATGA
CTTGGACGCGCATCCTCCAGAATTAGAGGCAATGATGTCTCAGCATCAAG
CGTAA

Synonyms

Publications