EWM25303.1, cds5363 (CDS) Nannochloropsis gaditana

Overview
NameEWM25303.1
Unique Namecds5363
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:839246..841300 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25303.1
Producttranscription factor iiib 90 kda subunit
Orig transcript idgnl|cribi|Naga_100135g10.5860.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:839246..841300 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0140110transcription regulator activity
GO:0005515protein binding
GO:0017025TBP-class protein binding
GO:0008270zinc ion binding
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0016043cellular component organization
GO:0006384transcription initiation from RNA polymerase III promoter
GO:0006355regulation of transcription, DNA-templated
GO:0006352DNA-templated transcription, initiation
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0000126transcription factor TFIIIB complex
Vocabulary: INTERPRO
TermDefinition
IPR029529Brf1
IPR011665BRF1_TBP-bd_dom
IPR013150TFIIB_cyclin
IPR013763Cyclin-like
IPR000812TFIIB
Homology
BLAST of EWM25303.1 vs. NCBI_GenBank
Match: gi|585107058|gb|EWM25303.1| (transcription factor iiib 90 kda subunit [Nannochloropsis gaditana])

HSP 1 Score: 1408.66 bits (3645), Expect = 0.000e+0
Identity = 684/684 (100.00%), Postives = 684/684 (100.00%), Query Frame = 0
Query:    1 MQHMHRKLPSVCLLGPDDNHIHPVGEARFLPMEQILRCPNPDCRGTDLEYSEPDGATICMACHTIVEENAIVSSVEFNENNAGGASTVVGQFVGPEMTKAYSSAGRGRRRFYTRDSRDTTLNNGRRAIQQVVSQLRLRQAFVDRACRLFRTAVERNFVQGRKTMCVVAVCLYMVCREDNSPHMLIDFSDAVQINVYVLGHAFLKFKQLTGLNLAVIDPSIYIHRFAARLELGSEQEQTQVSQLALRLVASMQRDWIQAGRRPSGICGAALYLSAVYHEKPRTYKDVGRIVRVSPDTIKKRVDEFERTPISGMMSREELAEMAISDFEDLTRRQGPGSYLGEADPPSFTRALKMKEAQALQEGKKDFEERNGPGAKEQERLATLKDSSTPSGPGTVSAAAAAVAAVAAAAATIGSKRGGLCRGRGRGASVATIRSSKRVRRSEPLEEIAQEEDPLPQEEDEDEEGGVGDFDGGLHKELMDQLLDEEEEKAKKIAVAEAAAAGCQAPGRQQHGGKKGGEIALSESGVEALIGDGVLQDEAKETDDTAQYIRSNAEVEKLSKVWHEVHKGYLEKQARKKAEEEAVKKRAEEDFNYRPPGQSNQRRKAAAAAAAASVVSGAQQGAGEGGAITPAGPERSPAEIAVSNHLAKKRISKKINYEAVKMLGNDDDLDAHPPELEAMMSQHQA 684
            MQHMHRKLPSVCLLGPDDNHIHPVGEARFLPMEQILRCPNPDCRGTDLEYSEPDGATICMACHTIVEENAIVSSVEFNENNAGGASTVVGQFVGPEMTKAYSSAGRGRRRFYTRDSRDTTLNNGRRAIQQVVSQLRLRQAFVDRACRLFRTAVERNFVQGRKTMCVVAVCLYMVCREDNSPHMLIDFSDAVQINVYVLGHAFLKFKQLTGLNLAVIDPSIYIHRFAARLELGSEQEQTQVSQLALRLVASMQRDWIQAGRRPSGICGAALYLSAVYHEKPRTYKDVGRIVRVSPDTIKKRVDEFERTPISGMMSREELAEMAISDFEDLTRRQGPGSYLGEADPPSFTRALKMKEAQALQEGKKDFEERNGPGAKEQERLATLKDSSTPSGPGTVSAAAAAVAAVAAAAATIGSKRGGLCRGRGRGASVATIRSSKRVRRSEPLEEIAQEEDPLPQEEDEDEEGGVGDFDGGLHKELMDQLLDEEEEKAKKIAVAEAAAAGCQAPGRQQHGGKKGGEIALSESGVEALIGDGVLQDEAKETDDTAQYIRSNAEVEKLSKVWHEVHKGYLEKQARKKAEEEAVKKRAEEDFNYRPPGQSNQRRKAAAAAAAASVVSGAQQGAGEGGAITPAGPERSPAEIAVSNHLAKKRISKKINYEAVKMLGNDDDLDAHPPELEAMMSQHQA
Sbjct:    1 MQHMHRKLPSVCLLGPDDNHIHPVGEARFLPMEQILRCPNPDCRGTDLEYSEPDGATICMACHTIVEENAIVSSVEFNENNAGGASTVVGQFVGPEMTKAYSSAGRGRRRFYTRDSRDTTLNNGRRAIQQVVSQLRLRQAFVDRACRLFRTAVERNFVQGRKTMCVVAVCLYMVCREDNSPHMLIDFSDAVQINVYVLGHAFLKFKQLTGLNLAVIDPSIYIHRFAARLELGSEQEQTQVSQLALRLVASMQRDWIQAGRRPSGICGAALYLSAVYHEKPRTYKDVGRIVRVSPDTIKKRVDEFERTPISGMMSREELAEMAISDFEDLTRRQGPGSYLGEADPPSFTRALKMKEAQALQEGKKDFEERNGPGAKEQERLATLKDSSTPSGPGTVSAAAAAVAAVAAAAATIGSKRGGLCRGRGRGASVATIRSSKRVRRSEPLEEIAQEEDPLPQEEDEDEEGGVGDFDGGLHKELMDQLLDEEEEKAKKIAVAEAAAAGCQAPGRQQHGGKKGGEIALSESGVEALIGDGVLQDEAKETDDTAQYIRSNAEVEKLSKVWHEVHKGYLEKQARKKAEEEAVKKRAEEDFNYRPPGQSNQRRKAAAAAAAASVVSGAQQGAGEGGAITPAGPERSPAEIAVSNHLAKKRISKKINYEAVKMLGNDDDLDAHPPELEAMMSQHQA 684          
BLAST of EWM25303.1 vs. NCBI_GenBank
Match: gi|219129783|ref|XP_002185060.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217403555|gb|EEC43507.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 313.923 bits (803), Expect = 1.713e-94
Identity = 178/372 (47.85%), Postives = 234/372 (62.90%), Query Frame = 0
Query:   17 DDNHIHPVGEARFLPM---EQILRCPNPDCRGTDLEYSEPDGATICMACHTIVEENAIVSSVEFNENNAGGASTVVGQFVGPEMTKAYSSAGRGR--------RRFYTRDSRDTTLNNGRRAIQQVVSQLRLRQAFVDRACRLFRTAVERNFVQGRKTMCVVAVCLYMVCREDNSPHMLIDFSDAVQINVYVLGHAFLKFKQLTGLNLAVIDPSIYIHRFAARLELGSEQEQTQVSQLALRLVASMQRDWIQAGRRPSGICGAALYLSAVYHEKPRTYKDVGRIVRVSPDTIKKRVDEFERTPISGMMSREELAEMAISDFEDLTRRQGPGSYLGEADPPSFTRALKMKE--AQALQEGKKD-FEERNGPGA 374
            D  H H   +   +P       + CPN  C  T +E  +  GA++C  C  +VEENAIVS+VEF E  AGGAS++VGQFV    +KAY+    G         R  ++RDSR+TTL NGRR IQ+V S+LRL   FVD A RLF  AVERNFVQGR+T  VVA CLY+ CR++ S HMLIDFSDA+Q+NVY LG  FLKF++L GL L +IDP++YI+RFAA L+L  +++   VS  ALRLVA M+RDWI AGRRP+GIC AAL +++  H   R ++DV RI+RV   T+  RV EFE TP S  ++ E+  ++ +                 EADPP F R  K +E  A+A+++G  +  E  +GP A
Sbjct:   45 DAAHNHASADTNSIPKPASTMSIFCPN--CGSTSIEQHDASGASVCTECGVVVEENAIVSAVEFVEG-AGGASSMVGQFVSATSSKAYTGGPGGGGPGGGAGGRYGFSRDSRETTLANGRRRIQEVASRLRLGTHFVDAAHRLFTIAVERNFVQGRRTTHVVAACLYIACRQEKSQHMLIDFSDALQVNVYTLGTCFLKFRRLLGLKLEIIDPALYIYRFAAHLDL--DEKANAVSLTALRLVARMKRDWIVAGRRPAGICAAALLIASRAHGFSRHHQDVTRILRVCGWTVTNRVKEFEHTP-SAALTLEQFQKVDLD---------------VEADPPVFRRN-KFREARAKAIRQGNVELLESESGPLA 394          
BLAST of EWM25303.1 vs. NCBI_GenBank
Match: gi|1210528291|dbj|GAX12980.1| (transcription factor IIIB 90 kDa subunit [Fistulifera solaris])

HSP 1 Score: 309.686 bits (792), Expect = 8.992e-93
Identity = 172/329 (52.28%), Postives = 229/329 (69.60%), Query Frame = 0
Query:   36 LRCPNPDCRGTDLEYSEPDGATICMACHTIVEENAIVSSVEFNENNAGGASTVVGQFVGPEMTKAYSSAGRGRRRFYTRDSRDTTLNNGRRAIQQVVSQLRLRQAFVDRACRLFRTAVERNFVQGRKTMCVVAVCLYMVCREDNSPHMLIDFSDAVQINVYVLGHAFLKFKQLTGLNLAVIDPSIYIHRFAARLELGSEQEQTQVSQLALRLVASMQRDWIQAGRRPSGICGAALYLSAVYHEKPRTYKDVGRIVRVSPDTIKKRVDEFERTPISGMMSREELAEMAISDFEDLTRRQGPGSYLGEADPPSFTRALKMKEA--QALQEG 362
            L CPN  C G  +E  E  GA+IC+ C  +VEENAIVS+VEF E  AGG+S +VGQFV    +KAY+ A  GRR  +++DSR+TTL NGRR IQ+V S+LRL   FVD A RLF  AVE+NFVQGR+T+ VVA CLY+ CR++ S HMLIDFSDA+Q+NVY LG  FLKF++L GL L +IDP++YI+RFAA L+L  +++   VS  ALRLVA M+RDWI AGRRP+GIC AAL ++A  H   + + DV RI++V   T+  RV EFE+TP S  ++ ++ + +      +L R         E DPP++TR  K++EA  +A+Q+G
Sbjct:   34 LMCPN--CGGKAIEQHEASGASICIECGIVVEENAIVSAVEFVEG-AGGSSNMVGQFVSASSSKAYTGAAVGRRYAFSKDSRETTLANGRRRIQEVASRLRLGSHFVDAAHRLFTIAVEKNFVQGRRTIHVVAACLYIACRQEKSQHMLIDFSDALQVNVYTLGTCFLKFRRLLGLQLEIIDPALYIYRFAAHLDL--DEKANAVSMTALRLVARMKRDWIVAGRRPAGICAAALLIAARVHGFSKHHHDVTRILKVCGMTVTSRVREFEKTP-SARLTLDQFSTV------ELQR---------EVDPPAYTRN-KIQEARLKAIQDG 340          
BLAST of EWM25303.1 vs. NCBI_GenBank
Match: gi|1210530356|dbj|GAX10940.1| (transcription factor IIIB 90 kDa subunit [Fistulifera solaris])

HSP 1 Score: 309.686 bits (792), Expect = 9.184e-93
Identity = 172/329 (52.28%), Postives = 229/329 (69.60%), Query Frame = 0
Query:   36 LRCPNPDCRGTDLEYSEPDGATICMACHTIVEENAIVSSVEFNENNAGGASTVVGQFVGPEMTKAYSSAGRGRRRFYTRDSRDTTLNNGRRAIQQVVSQLRLRQAFVDRACRLFRTAVERNFVQGRKTMCVVAVCLYMVCREDNSPHMLIDFSDAVQINVYVLGHAFLKFKQLTGLNLAVIDPSIYIHRFAARLELGSEQEQTQVSQLALRLVASMQRDWIQAGRRPSGICGAALYLSAVYHEKPRTYKDVGRIVRVSPDTIKKRVDEFERTPISGMMSREELAEMAISDFEDLTRRQGPGSYLGEADPPSFTRALKMKEA--QALQEG 362
            L CPN  C G  +E  E  GA+IC+ C  +VEENAIVS+VEF E  AGG+S +VGQFV    +KAY+ A  GRR  +++DSR+TTL NGRR IQ+V S+LRL   FVD A RLF  AVE+NFVQGR+T+ VVA CLY+ CR++ S HMLIDFSDA+Q+NVY LG  FLKF++L GL L +IDP++YI+RFAA L+L  +++   VS  ALRLVA M+RDWI AGRRP+GIC AAL ++A  H   + + DV RI++V   T+  RV EFE+TP S  ++ ++ + +      +L R         E DPP++TR  K++EA  +A+Q+G
Sbjct:   34 LTCPN--CGGKAIEQHEASGASICIECGIVVEENAIVSAVEFVEG-AGGSSNMVGQFVSASSSKAYTGAAVGRRYSFSKDSRETTLANGRRRIQEVASRLRLGSHFVDAAHRLFTIAVEKNFVQGRRTIHVVAACLYIACRQEKSQHMLIDFSDALQVNVYTLGTCFLKFRRLLGLQLEIIDPALYIYRFAAHLDL--DEKANAVSMTALRLVARMKRDWIVAGRRPAGICAAALLIAARVHGFSKHHHDVTRILKVCGMTVTSRVREFEKTP-SARLTLDQFSTV------ELQR---------EVDPPAYTRN-KIQEARLKAIQDG 340          
BLAST of EWM25303.1 vs. NCBI_GenBank
Match: gi|1072237985|gb|OEU22712.1| (cyclin-like protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 288.886 bits (738), Expect = 1.440e-86
Identity = 167/340 (49.12%), Postives = 221/340 (65.00%), Query Frame = 0
Query:   38 CPNPDCRGTDLEYSEPDGATICMACHTIVEENAIVSSVEFNENNAGGASTVVGQFVGPEMTKAYSSAGRGRRRF-YTRDSRDTTLNNGRRAIQQVVSQLRLRQAFVDRACRLFRTAVERNFVQGRKTMCVVAVCLYMVCREDNSPHMLIDFSDAVQINVYVLGHAFLKFKQLTGLNLAVIDPSIYIHRFAARLELGSEQEQTQVSQLALRLVASMQRDWIQAGRRPSGICGAALYLSAVYHEKPRTYKDVGRIVRVSPDTIKKRVDEFERTPISGMMSREELAEMAISDFEDLTRRQGPGSYLGEADPPSFTRALKMK-EAQALQEGKKDF---EERNGP 372
            CPN  C    +E     GA++C  C  I+EENAIVS+VEF E   GGAS++VGQFV     KAY+  GR    + ++RDSR+TTL NGRR IQ+V S+LRL   +VD A RLF  AVE+NFVQGR+T+ VVA CLY+ CR++ S HMLIDFSDA+Q+NVY LG  FLKF++L GL LA++DP++YI+RFAA L+L    +   V+  ALRLV  M+RDWI  GRRP+GIC AAL ++A  H   R  +DV RI+RV   T+  RV EFE+TP S  ++ ++   + + +               EADPP+FTR   ++  A+A+QE   +    EER  P
Sbjct:   10 CPN--CGSKHIELQGASGASVCTECGVILEENAIVSNVEFVEGQ-GGASSMVGQFVSATSRKAYTGGGRAGGNYGFSRDSRETTLANGRRKIQEVASRLRLGGHYVDSAHRLFTIAVEKNFVQGRRTIHVVAACLYISCRQEKSQHMLIDFSDALQVNVYTLGTCFLKFRRLLGLKLAILDPALYIYRFAAHLDLND--QANLVALTALRLVGRMKRDWIVCGRRPAGICAAALLIAARAHGFSRHPQDVTRILRVCGMTVTTRVREFEQTP-SASLTLQQFGRVELEN---------------EADPPAFTRNRILEARARAIQENNVELLTSEERLPP 328          
BLAST of EWM25303.1 vs. NCBI_GenBank
Match: gi|922862475|gb|KOO30075.1| (brf1 subunit of RNA polymerase iii transcription initiation factor iiib [Chrysochromulina sp. CCMP291])

HSP 1 Score: 283.493 bits (724), Expect = 1.861e-85
Identity = 161/362 (44.48%), Postives = 219/362 (60.50%), Query Frame = 0
Query:   38 CPNPDCRGTDLEYSEPDGATICMACHTIVEENAIVSSVEFNENNAGGASTVVGQFVGPEMTKAYSSAGRGRRRFYTRDSRDTTLNNGRRAIQQVVSQLRLRQAFVDRACRLFRTAVERNFVQGRKTMCVVAVCLYMVCREDNSPHMLIDFSDAVQINVYVLGHAFLKFKQLTGLNLAVIDPSIYIHRFAARLELGSEQEQTQVSQLALRLVASMQRDWIQAGRRPSGICGAALYLSAVYHEKPRTYKDVGRIVRVSPDTIKKRVDEFERTPISGMMSREELAEMAISDFEDLTRRQGPGSYLGEADPPSFTRALKMKEAQAL---------QEGKKDFEERNGPGAKEQERLATLKDSSTPS 390
            CPN  C  TD+E     G  +C+ C T++EENAIV+ V F ++ AGG S VVGQ+V    T    S+G G      ++SR+   NNG+R I Q+ + LRL +   + A RLF  AV+ NF+QGR+T  V+A CLY VCR++ +PH+LID+SD +Q NVY+LG  FLKF +L  L L +IDPS+YIHRFA+RLE G +     VS  ALRLV  M+RDWIQ GRRPSGICGAAL ++A  H   RT ++V R+VR+   T++KR+ EF  TP+  + +R    ++  +D E       P      ADPPS+TR  + + AQ L         Q  ++  E R    A+ + RLA L +  T S
Sbjct:    6 CPN--CGSTDIETDAQRGDAVCIQCGTVLEENAIVNEVTFAQD-AGGGSQVVGQYVAA--TPGVGSSGLG-----FKESRELAFNNGQRHISQLAAALRLAEHHQEAAQRLFMLAVQHNFIQGRRTQHVIAACLYTVCRKEKTPHLLIDYSDVLQENVYLLGSCFLKFTRLLSLTLPIIDPSLYIHRFASRLEFGDKTH--LVSMSALRLVQRMKRDWIQTGRRPSGICGAALLIAARVHGFRRTQREVVRVVRICDVTLRKRLTEFAETPMGALTAR----QLESADIEAF-----PA-----ADPPSYTRNRQAEVAQQLALTVTDEQRQRERQLLELRQLKVAQIRTRLAELGEDVTAS 341          
BLAST of EWM25303.1 vs. NCBI_GenBank
Match: gi|1173929528|gb|OQR82741.1| (transcription factor IIIB [Achlya hypogyna])

HSP 1 Score: 286.189 bits (731), Expect = 9.549e-85
Identity = 154/365 (42.19%), Postives = 226/365 (61.92%), Query Frame = 0
Query:   36 LRCPNPDCRGTDLEYSEPDGATICMACHTIVEENAIVSSVEFNENNAGGASTVVGQFVGPEMTKAYSSAGRGRRRFYTRDSRDTTLNNGRRAIQQVVSQLRLRQAFVDRACRLFRTAVERNFVQGRKTMCVVAVCLYMVCREDNSPHMLIDFSDAVQINVYVLGHAFLKFKQLTGLNLAVIDPSIYIHRFAARLELGSEQEQTQVSQLALRLVASMQRDWIQAGRRPSGICGAALYLSAVYHEKPRTYKDVGRIVRVSPDTIKKRVDEFERTPISGMMSREELAEMAISDFEDLTRRQGPGSYLGEADPPSFTRALKMKEAQALQEGKKDFEERNGPGAKEQERL-----ATLKDSSTPSGPGTV 395
            L CP   C+ T+++  +  G  +C++C T+VEEN IVSSVEF+E+  GGA +V+GQFV    TK+ ++ G G +  Y  +SR  TL NGRR I+QV   LRL   +V+ A RLF  AV+RNF  GR+   +V  CLY+VCR + SPH+LIDFSD +Q++V+ LG  FLKF +L  L++ +IDPS+YIHRFA++L LG++     ++  ALRLV+SM+RDW++ GRRPSGICGAAL ++A  H    T  DV  +V +   T+KKR+ EF  TP +  ++ +++ ++ I               L E DPP+FTR  + +  + L       E    PG  + + L     AT ++++  +GPG +
Sbjct:    4 LVCPT--CQCTEIDTHDASGEAVCVSCGTVVEENTIVSSVEFSES--GGAHSVMGQFVSGTATKSSTNVGTGGKH-YDSESRAATLANGRRRIKQVAGMLRLGDHYVESADRLFGLAVQRNFTHGRRWQAIVTACLYVVCRREKSPHLLIDFSDKLQVSVFQLGAVFLKFCRLLQLSIPLIDPSLYIHRFASQLNLGTQMHVIAIT--ALRLVSSMKRDWMETGRRPSGICGAALLIAARSHNVKCTISDVAGVVSIGEATLKKRLTEFAVTP-TAQLTFDQMGKVEIR--------------LLECDPPAFTRNREKETMETLL-----LEMAPTPGLLQDKELTTMIHATWREATDGAGPGLL 341          
BLAST of EWM25303.1 vs. NCBI_GenBank
Match: gi|1173949293|gb|OQR97350.1| (transcription factor IIIB [Thraustotheca clavata])

HSP 1 Score: 285.419 bits (729), Expect = 2.058e-84
Identity = 145/323 (44.89%), Postives = 208/323 (64.40%), Query Frame = 0
Query:   37 RCPNPDCRGTDLEYSEPDGATICMACHTIVEENAIVSSVEFNENNAGGASTVVGQFVGPEMTKAYSSAGRGRRRFYTRDSRDTTLNNGRRAIQQVVSQLRLRQAFVDRACRLFRTAVERNFVQGRKTMCVVAVCLYMVCREDNSPHMLIDFSDAVQINVYVLGHAFLKFKQLTGLNLAVIDPSIYIHRFAARLELGSEQEQTQVSQLALRLVASMQRDWIQAGRRPSGICGAALYLSAVYHEKPRTYKDVGRIVRVSPDTIKKRVDEFERTPISGMMSREELAEMAISDFEDLTRRQGPGSYLGEADPPSFTRALKMKEAQAL 359
            R   P C+ T+++  +  G  +C++C T+VE N IVSSVEF+E  AGG  +V+GQFV    +KA+ S G G +  Y  +SR  TL NGRR I+QV   LRL   +V+ A RLF  AV+RNF  GR+   +VA CLY+VCR + SPH+LIDFSD +Q++V+ LG  FLKF +L  L++ +IDPS+YIHRFA++L LGS+     ++  ALRLV++++RDWI+ GRRPSG+CGAAL ++A  H    T  DV  +V +   T+KKR+ EF  TP +  ++ +++ ++ I               L E DPP FTR  +++  +AL
Sbjct:    3 RLVCPTCQCTEIDMHDASGEAVCVSCGTVVESNTIVSSVEFSE--AGGGHSVLGQFVSGTASKAHGSVGAGGKH-YDNESRLATLANGRRRIKQVAGMLRLGDHYVESADRLFALAVQRNFTHGRRWQTIVAACLYVVCRREKSPHLLIDFSDKLQVSVFQLGAVFLKFCRLLQLSIPLIDPSLYIHRFASQLNLGSQMHAIAIT--ALRLVSALKRDWIETGRRPSGVCGAALLIAARSHNVKCTLSDVASVVNIGEMTLKKRLIEFSVTP-TAQLTFDQMGKVEIR--------------LLECDPPCFTRNRELETMEAL 305          
BLAST of EWM25303.1 vs. NCBI_GenBank
Match: gi|669157772|ref|XP_008614448.1| (hypothetical protein SDRG_10244 [Saprolegnia diclina VS20] >gi|530733804|gb|EQC32046.1| hypothetical protein SDRG_10244 [Saprolegnia diclina VS20])

HSP 1 Score: 283.108 bits (723), Expect = 2.007e-83
Identity = 149/338 (44.08%), Postives = 214/338 (63.31%), Query Frame = 0
Query:   36 LRCPNPDCRGTDLEYSEPDGATICMACHTIVEENAIVSSVEFNENNAGGASTVVGQFVGPEMTKAYSSAGRGRRRFYTRDSRDTTLNNGRRAIQQVVSQLRLRQAFVDRACRLFRTAVERNFVQGRKTMCVVAVCLYMVCREDNSPHMLIDFSDAVQINVYVLGHAFLKFKQLTGLNLAVIDPSIYIHRFAARLELGSEQEQTQVSQLALRLVASMQRDWIQAGRRPSGICGAALYLSAVYHEKPRTYKDVGRIVRVSPDTIKKRVDEFERTPISGMMSREELAEMAISDFEDLTRRQGPGSYLGEADPPSFTR----------ALKMKEAQALQEGK 363
            L CP   C+ T+++  +  G  +C++C T+VEEN IVSSVEF+E+  GGA +V+GQFV    +K  ++ G G +  Y  +SR TTL NGRR I+QV   LRL   +V+ A RLF  AV+RNF  GR+   +V  CLY+VCR + SPH+LIDFSD +QI+V+ LG  FLKF +L  L++ +IDPS+YIHRFA++L LG++     ++  ALRLV++M+RDW++ GRRPSGICGAAL ++A  H    T  DV  +V +   T++KR+ EF  TP +  ++ +++ ++ I               L E DPP+FTR           L+M  ++ L EGK
Sbjct:    4 LVCPT--CQCTEIDVYDASGEAVCVSCGTVVEENTIVSSVEFSES--GGAHSVMGQFVSGSASKPSTNIGTGGKH-YDSESRATTLANGRRRIKQVAGMLRLGDHYVESADRLFGLAVQRNFTHGRRWQAIVTACLYVVCRREKSPHLLIDFSDKLQISVFQLGAVFLKFCRLLQLSIPLIDPSLYIHRFASQLNLGTQMHVIAIT--ALRLVSAMKRDWMETGRRPSGICGAALLIAARSHNVKCTMTDVAGVVSIGEVTLRKRLAEFAVTP-TAQLTFDQMGKVEIK--------------LLECDPPAFTRNREKETMESLLLEMAPSKGLLEGK 319          
BLAST of EWM25303.1 vs. NCBI_GenBank
Match: gi|676389533|ref|XP_009038045.1| (hypothetical protein AURANDRAFT_71825 [Aureococcus anophagefferens] >gi|323451551|gb|EGB07428.1| hypothetical protein AURANDRAFT_71825 [Aureococcus anophagefferens])

HSP 1 Score: 293.893 bits (751), Expect = 2.373e-83
Identity = 159/338 (47.04%), Postives = 211/338 (62.43%), Query Frame = 0
Query:   36 LRCPNPDCRGTDLEYSEPDGATICMACHTIVEENAIVSSVEFNENNAGGASTVVGQFVGPEMTKAYSSAGRGRRRF----------YTRDSRDTTLNNGRRAIQQVVSQLRLRQAFVDRACRLFRTAVERNFVQGRKTMCVVAVCLYMVCREDNSPHMLIDFSDAVQINVYVLGHAFLKFKQLTGLNLAVIDPSIYIHRFAARLELGSEQEQTQVSQLALRLVASMQRDWIQAGRRPSGICGAALYLSAVYHEKPRTYKDVGRIVRVSPDTIKKRVDEFERTPISGMMSREELAEMAISDFEDLTRRQGPGSYLGEADPPSFTRALKMKE-AQALQEG 362
            ++CPNP+C   D+++ E  G  +C+ C T+ EE+ IVSS+EF E+  GGAS+VVGQFV    TK +   G                + R SR+TTL  GRR I QV S LRL   FVD A RLF  A +RNF QGRKT+ VV  CLY++CR + S HMLIDFSD +Q+NVY LG  FLKF++L  L L +IDPS+YIHRFAA+LELG   +   V+  ALR+V  M+RDWI+ GRRP+G+C AAL + A  H   RT  DV + +RV   T+ KR+ +F+ TP          A++++++F    RR      L E  PPSF RA + +E A+ LQ+G
Sbjct:  390 MKCPNPECGSIDIDWQEAGGDAVCVRCGTVCEESTIVSSIEFAESG-GGASSVVGQFVSASCTKPFGGLGGSGWGGSRGGGRPRYGFLRSSRETTLATGRRKIAQVASSLRLGAHFVDGAHRLFGMAAQRNFTQGRKTLHVVCACLYVMCRREKSAHMLIDFSDVLQVNVYALGATFLKFRRLLNLELPIIDPSLYIHRFAAKLELG--DKCGAVATTALRVVQRMKRDWIETGRRPAGVCAAALLVGARAHGFHRTQDDVVKALRVCGMTVAKRLADFQATPA---------AQLSLAEF---NRRSDD---LAEEHPPSFQRAERSRENARRLQQG 709          
The following BLAST results are available for this feature:
BLAST of EWM25303.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107058|gb|EWM25303.1|0.000e+0100.00transcription factor iiib 90 kda subunit [Nannochl... [more]
gi|219129783|ref|XP_002185060.1|1.713e-9447.85predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1210528291|dbj|GAX12980.1|8.992e-9352.28transcription factor IIIB 90 kDa subunit [Fistulif... [more]
gi|1210530356|dbj|GAX10940.1|9.184e-9352.28transcription factor IIIB 90 kDa subunit [Fistulif... [more]
gi|1072237985|gb|OEU22712.1|1.440e-8649.12cyclin-like protein [Fragilariopsis cylindrus CCMP... [more]
gi|922862475|gb|KOO30075.1|1.861e-8544.48brf1 subunit of RNA polymerase iii transcription i... [more]
gi|1173929528|gb|OQR82741.1|9.549e-8542.19transcription factor IIIB [Achlya hypogyna][more]
gi|1173949293|gb|OQR97350.1|2.058e-8444.89transcription factor IIIB [Thraustotheca clavata][more]
gi|669157772|ref|XP_008614448.1|2.007e-8344.08hypothetical protein SDRG_10244 [Saprolegnia dicli... [more]
gi|676389533|ref|XP_009038045.1|2.373e-8347.04hypothetical protein AURANDRAFT_71825 [Aureococcus... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5376rna5376Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications