rna5375, rna5375 (mRNA) Nannochloropsis gaditana

Overview
Namerna5375
Unique Namerna5375
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1837
Alignment locationCM002465.1:834063..835672 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100135g11.5863.mrna
Orig protein idgnl|cribi|Naga_100135g11.5863
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:834063..835672 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100135g11gene5196Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25306.1cds5362Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5375rna5375-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5375 ID=rna5375|Name=rna5375|organism=Nannochloropsis gaditana|type=mRNA|length=1837bp
TTGTGGATGAAAAGGAGTCAATAAGAAGTTGGGAAAAAAAAATGGCGAAC
AAGAGAGTTGAAGAAAGCACCGAAGCGGATCGACTCCGTTTCCCTGCGTG
CGCCATTTTATCTCTTTATATCAGAAAGCATTGACAAGTGTACCATACGT
ATTCGGAAAGGAAGTAAAATATTGGGTAAACGAGGATTCACAAGTCAAAA
TGCCACGAATGGCTCAGAAAAGCCGTGCCTTTTGTGGAAAATCATACTGA
GTACAGCACGTCGCCAGAATATAAACAACAATCCAGCAGTCCTTATAAGC
TATCTCTTCACATTTCGGCATACAGAACATTCAAGTGAATGTTGATATCC
CTCCTGATCTAATATTGTGGCTTGGGAATTCTTTGGCTTATATACAACAC
GAATACCCCGCTACTCAAGAGATCGCTTGCCAGGCAGGGTGTTCAGCTTG
TAGCCGTGACTGACTTGTATTTCGCAAAACACCTCACCAAGCACGCTCAC
ACAGATAAAATTCATGGGTATGGTGCATAAAATAACCCCAGACCTCTTAC
GGGGTGTGGCCTTAGGCTTGCTGGGTGCCTTTGTGCTTGCCATAATGAGT
TATCACCTCACAGTATTCATATTCCGCAAGCGATTTCCAGTTCCTCCCAA
GGGGGGAGCCATCGTCATTACTGGCGCAAGCACCGGAATCGGCAACCATG
CTGCACAGCATCTGGCAAGGCAAGGTTATATCGTATACTGTACCGTACGG
AAGCCGGCAGACGTGGAAGCTATTCAGGCGCTAGGGCTGCCCAATCTGCG
ACCCATTATCATGGACGTTGCTCAGGCCAAATCCATCGAGAACGGGGCCG
AAACCATTCTGGCAGAACTTTCGAAAAATAACATTCCCCTAATTGGTCTC
GTTAATAACGCAGGCGTTGCACAGAAGTTCCCCTTGGAATTCCACCCTTT
GACGGACCTCCGCAGCATGTTCGACATCCACGTGATAGGGCCTCTCGAAC
TGACCCAGCGCCTCTTGCCCGCCATTCGAGCCAACAAAGGTCGCATCGTC
AATCTCTCCTCCATCACTGCACTTGTGCTTCTTCCAACAGGGGCAGCTTA
CGGTGCCAGCAAATTGGCTGTGGAGGGGATTAGCGACGGGCTACGGCGAG
AGCTCGTCGACTTCGATTGTTCGGTGTCCATTGTACAACCCGCGTACGTC
AACACGGCCATCTTCAAAAAAGTCACCCAAAGTATCGACACAAAAGTCGA
AGTCTCGCCGGAAATCATGACTACCTACGGGTATTTTTTCCGGACCGAAA
AACGTATTAAAGACCGAGCGGCTGTGGACAAAGCAAGCCCCCCCTCTGTC
ACCACAGACGCGATAACTCATGCATTGACGTCTCCTTACCCACATACACG
CTACATCGTGGCAAATGTGAGCGGAATACCAGCATTCTGGCTGGGCTGGT
TGGTCTGGCTCTGTCCGGACCGGTTGGCGGATTTTATCATGGGAAAATTC
TCGTGAGGCAATCCAGAAAGGATGGGGAAAGGCAATAGCGTCCTGCTCAA
TCCCTTTTGAGGTATGACGCGTGCTGCAGAAGAGATGTACAATGGTGGTA
TCATAATGCGAGGCTGTAAGCATGGTCAGGTATGAGAAACGGGGATGCAT
AGAAGGAGGAAAAGTGCTATTGTTCAAGCTCCGTGCTGCTTCGCGGAATA
ACTTGAACGCAATCAAGGATTCACGGGCTAAAATGAAATAAAAATTATAG
ACAAGTACAGAGTCTTTGAAAAGATGGCCAGGATCATGTACGAGAAGGAG
TTTAAAAAGAAGAAAGGGGGCAGTTTGGCCAGAAAAA
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protein sequence of rna5375

>rna5375-protein ID=rna5375-protein|Name=rna5375|organism=Nannochloropsis gaditana|type=polypeptide|length=488bp
MPLLSPSSPSSGTSLIENVSMEVTSHSHRLEKDINVLFRTALHAKRSPRP
LLSASFGQLLVDILKHHLPALLERTRKFANQASCNTLIGHLSAACSASHE
NKVGAEEIKGRCRRARCLYIMQHEWAVIGPGDKIDYIVSDDATTCHLVGI
REPCTGVVGLAHVDAVEVVPDLVAVEDAVQKESMLRSESHAGNALGGFRR
PTEPLTLDLFLVGGYEGDSEGGLLTAAILQHFQSTSVHKYNLQLALVSSL
NTCTLPSVFSSPSMTPSVPAPLCRSLGFVIEPPRNPAAAAPSKASGSCDL
FGAHVLTGDVPESLRGPMRTLRALRLWGRGSRRLVQVRLAHSPGEAGVAA
FDQEEIANSSRCSRPQPKSCPSFSCPPSAPSASNSEVSIVINPFRFRCSE
DIKALACLEDEALKLETSTSPAIESPSFVSDIRAVLKMNQTAFPEDFFGP
RVSQPLLVPLHAVEAATLLTAESKGGEERRGNRRINVT
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mRNA from alignment at CM002465.1:834063..835672-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5375 ID=rna5375|Name=rna5375|organism=Nannochloropsis gaditana|type=mRNA|length=1610bp|location=Sequence derived from alignment at CM002465.1:834063..835672- (Nannochloropsis gaditana)
CCGTACCCTCCCCTTCAAACAGGATAAGGCCCTGGAATAATGCCGTTGCT
CTCGCCTTCTTCTCCATCATCTGGCACTTCTTTGATTGAAAATGTGTCTA
TGGAGGTCACCTCTCACTCGCATCGGCTTGAGAAGGACATAAATGTCCTT
TTCCGGACAGCGTTACACGCCAAGCGAAGCCCCCGGCCCCTGCTCTCCGC
TTCCTTTGGACAGCTCCTTGTTGACATCCTTAAGCACCATCTACCTGCCC
TTTTGGAGCGAACACGCAAGTTTGCCAATCAGGCATCCTGCAATACCCTG
ATCGGCCATTTATCTGCCGCATGCTCCGCTTCTCACGAGAACAAAGTAGG
GGCAGAGGAGATTAAAGGCCGTTGTCGCCGCGCGCGGTGCCTGTACATTA
TGCAGCACGAATGGGCAGTGATCGGACCTGGGGATAAAATAGATTACATA
GTCAGCGACGACGCCACAACGTGCCATTTGGTGGGCATTCGGGAACCGTG
TACAGGTGTTGTGGGTCTGGCCCATGTCGACGCTGTGGAGGTGGTGCCAG
ATTTGGTGGCCGTTGAAGACGCCGTCCAGAAAGAAAGCATGCTGCGGTCG
GAGAGCCATGCTGGGAATGCCCTAGGTGGCTTTCGACGGCCGACTGAGCC
GCTAACCTTGGATCTCTTTCTGGTCGGGGGCTACGAGGGCGACAGCGAGG
GCGGACTCTTGACGGCTGCGATCCTGCAGCATTTTCAATCCACGTCTGTG
CACAAGTATAACCTACAGCTGGCACTTGTTTCCTCTCTCAACACGTGCAC
ACTCCCCAGTGTTTTTTCTTCCCCCTCTATGACGCCTTCGGTCCCCGCTC
CCCTCTGCCGTTCCCTGGGCTTTGTAATAGAGCCCCCCCGTAACCCTGCC
GCAGCGGCCCCCTCCAAAGCCAGTGGATCCTGTGATCTTTTTGGGGCGCA
CGTGCTCACGGGAGACGTACCAGAGAGCTTGCGGGGTCCCATGCGGACGC
TTCGTGCCCTCCGCCTTTGGGGAAGAGGGTCTCGTAGACTCGTGCAAGTC
CGGCTGGCGCACTCTCCGGGAGAAGCCGGAGTGGCGGCGTTCGATCAGGA
GGAAATCGCGAACTCCTCACGATGTTCTCGGCCTCAACCCAAGTCTTGCC
CCTCTTTCTCCTGTCCTCCCTCCGCCCCGTCCGCCTCCAATTCCGAGGTC
AGCATCGTCATCAACCCCTTCCGGTTCCGTTGTTCGGAAGACATCAAGGC
CCTGGCCTGCCTGGAGGACGAGGCGCTCAAATTGGAAACGTCCACTTCTC
CGGCCATCGAATCCCCGTCCTTTGTCTCGGACATTCGGGCAGTCTTGAAA
ATGAATCAAACGGCTTTTCCCGAAGATTTCTTCGGGCCACGTGTCTCGCA
ACCGTTACTGGTACCTCTGCACGCGGTTGAGGCGGCAACGCTGCTGACAG
CGGAGAGTAAAGGAGGGGAAGAGAGAAGGGGAAACAGAAGAATAAATGTG
ACATGAAACTATGCAGATACCTCTGGAGTCGTCCTGCTTAATCAAAGTAG
CCTGCATTCGACGCGAGTATACAAACACTCTGTGAATAAGCGCGATGTAG
TATGTCAACA
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Coding sequence (CDS) from alignment at CM002465.1:834063..835672-

>rna5375 ID=rna5375|Name=rna5375|organism=Nannochloropsis gaditana|type=CDS|length=1467bp|location=Sequence derived from alignment at CM002465.1:834063..835672- (Nannochloropsis gaditana)
ATGCCGTTGCTCTCGCCTTCTTCTCCATCATCTGGCACTTCTTTGATTGA
AAATGTGTCTATGGAGGTCACCTCTCACTCGCATCGGCTTGAGAAGGACA
TAAATGTCCTTTTCCGGACAGCGTTACACGCCAAGCGAAGCCCCCGGCCC
CTGCTCTCCGCTTCCTTTGGACAGCTCCTTGTTGACATCCTTAAGCACCA
TCTACCTGCCCTTTTGGAGCGAACACGCAAGTTTGCCAATCAGGCATCCT
GCAATACCCTGATCGGCCATTTATCTGCCGCATGCTCCGCTTCTCACGAG
AACAAAGTAGGGGCAGAGGAGATTAAAGGCCGTTGTCGCCGCGCGCGGTG
CCTGTACATTATGCAGCACGAATGGGCAGTGATCGGACCTGGGGATAAAA
TAGATTACATAGTCAGCGACGACGCCACAACGTGCCATTTGGTGGGCATT
CGGGAACCGTGTACAGGTGTTGTGGGTCTGGCCCATGTCGACGCTGTGGA
GGTGGTGCCAGATTTGGTGGCCGTTGAAGACGCCGTCCAGAAAGAAAGCA
TGCTGCGGTCGGAGAGCCATGCTGGGAATGCCCTAGGTGGCTTTCGACGG
CCGACTGAGCCGCTAACCTTGGATCTCTTTCTGGTCGGGGGCTACGAGGG
CGACAGCGAGGGCGGACTCTTGACGGCTGCGATCCTGCAGCATTTTCAAT
CCACGTCTGTGCACAAGTATAACCTACAGCTGGCACTTGTTTCCTCTCTC
AACACGTGCACACTCCCCAGTGTTTTTTCTTCCCCCTCTATGACGCCTTC
GGTCCCCGCTCCCCTCTGCCGTTCCCTGGGCTTTGTAATAGAGCCCCCCC
GTAACCCTGCCGCAGCGGCCCCCTCCAAAGCCAGTGGATCCTGTGATCTT
TTTGGGGCGCACGTGCTCACGGGAGACGTACCAGAGAGCTTGCGGGGTCC
CATGCGGACGCTTCGTGCCCTCCGCCTTTGGGGAAGAGGGTCTCGTAGAC
TCGTGCAAGTCCGGCTGGCGCACTCTCCGGGAGAAGCCGGAGTGGCGGCG
TTCGATCAGGAGGAAATCGCGAACTCCTCACGATGTTCTCGGCCTCAACC
CAAGTCTTGCCCCTCTTTCTCCTGTCCTCCCTCCGCCCCGTCCGCCTCCA
ATTCCGAGGTCAGCATCGTCATCAACCCCTTCCGGTTCCGTTGTTCGGAA
GACATCAAGGCCCTGGCCTGCCTGGAGGACGAGGCGCTCAAATTGGAAAC
GTCCACTTCTCCGGCCATCGAATCCCCGTCCTTTGTCTCGGACATTCGGG
CAGTCTTGAAAATGAATCAAACGGCTTTTCCCGAAGATTTCTTCGGGCCA
CGTGTCTCGCAACCGTTACTGGTACCTCTGCACGCGGTTGAGGCGGCAAC
GCTGCTGACAGCGGAGAGTAAAGGAGGGGAAGAGAGAAGGGGAAACAGAA
GAATAAATGTGACATGA
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Synonyms
Publications