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Properties
| Property Name | Value |
|---|
| Product | short-chain dehydrogenase reductase sdr |
| Orig transcript id | gnl|cribi|Naga_100135g12.5871.mrna |
| Orig protein id | gnl|cribi|Naga_100135g12.5871 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002465.1 | supercontig | CM002465.1:832209..834045 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5374 ID=rna5374|Name=rna5374|organism=Nannochloropsis gaditana|type=mRNA|length=1194bp
CCTCTAACTCCCGGCCTGCACACATATTATCGACAATTGCATTGGCAGGC
ACGTGAAACATATATCTCATCATAAAGGGAGAATCCTTTTGAGAGGGTAG
AAAAGGCCTTGGAGTCAGCAGACCTCGACCTCCCGCCACTGCCTAACGAA
GTTGCCCTACTGCAAACTGCCTCTACTTCTGGACAATTTAAAACGATCAG
CGCCTATAATCGTAAGCACAAGGGTATAAATGGCCAAATATCACATCCTC
TTGCTCATTGGCTTGCTCGGTGCAACTGGAAAGGGCGTCGCAGCATTTCT
GCTCCCAGTATCATTGGGACCTGCCTCAGATGCCCAACTCCCTAGTCCCC
CCCTGGCGACCACTCTCGGGTACGGCATCCCCCGGAGCCCCTTCATCCTC
TCGCCTCTGTACGCGGCAGCGGACACTGCCATGGATGGATCGTCCGATGA
AGACGACGAGGAAGTCGTGCCGGGCAAGATGAAAGTGAGCGAAATTAAAG
CCGAGCTGGATTTGAGGGGCGTTACTTCCGCAGGCGTTGTCGACAGAGCT
GAGCTGGAGGCTCTCCTGCTCAAGGCCCGAATTGAAGGGAAAGCACGACC
TGAAATATTGGACACTTTTAATGAACAGCGAGAGGCGGAGGAAGCGCGGA
AGGGAAAGAAACCAGACTTTGACTGGGACGCCGCGAAGGCGGGCGATGGC
AACCTCCCTGGGGGGGTGGACCCGGAGGCCTTGCAGAAATTGACGAGCAG
TCAAGAGATGATGGAAATTATGAGCAATCCCCGTCTGCAGGAATTGATGA
AAGCTGTCATGTCCAAGGACCAGGACGTCATTCAAAAGTACATGGCCGAC
GCTGAAGTTCTACAACTTATGGCTCGCTTCCAAAAGCTATCAGCAGAAGC
GGGTCTGGATCCATCCAAGTTTCCACCGCCCCCAGGGATGGAATGATAGT
GCTGGACCATCCTCATGACGGCATTTGGGGGTCAGTCCTTTCTTTGAGAA
GGGCGGTATCGAACAACATGAAGCTACAGACACTTGCGCGGATAATATTT
AGATTATAGAGTATTCGTTGTGCTCCTCGTGCGGGGAAAAATTAGGCATG
GGTATTATGGTGCCGCCGCTTTGTCGCCGCGGAAAAGACGCGACAATCAG
CCGCGCCTAAAGAAAATAAATGAAAATTAAGGCGCGCCCTTGGA back to topprotein sequence of rna5374 >rna5374-protein ID=rna5374-protein|Name=rna5374|organism=Nannochloropsis gaditana|type=polypeptide|length=330bp
MGMVHKITPDLLRGVALGLLGAFVLAIMSYHLTVFIFRKRFPVPPKGGAI
VITGASTGIGNHAAQHLARQGYIVYCTVRKPADVEAIQALGLPNLRPIIM
DVAQAKSIENGAETILAELSKNNIPLIGLVNNAGVAQKFPLEFHPLTDLR
SMFDIHVIGPLELTQRLLPAIRANKGRIVNLSSITALVLLPTGAAYGASK
LAVEGISDGLRRELVDFDCSVSIVQPAYVNTAIFKKVTQSIDTKVEVSPE
IMTTYGYFFRTEKRIKDRAAVDKASPPSVTTDAITHALTSPYPHTRYIVA
NVSGIPAFWLGWLVWLCPDRLADFIMGKFS back to topmRNA from alignment at CM002465.1:832209..834045+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5374 ID=rna5374|Name=rna5374|organism=Nannochloropsis gaditana|type=mRNA|length=1837bp|location=Sequence derived from alignment at CM002465.1:832209..834045+ (Nannochloropsis gaditana)
TTGTGGATGAAAAGGAGTCAATAAGAAgttgggaaaaaaaaatggcgAAC
AAGAGAGTTGAAGAAAGCACCGAAGCGGATCGACTCCGTTTCCCTGCGTG
CGCCATTTTATCTCTTTATATCAGAAAGCATTGACAAGTGTACCATACGT
ATTCGGAAAGGAAGTAAAATATTGGGTAAACGAGGATTCACAAGTCAAAA
TGCCACGAATGGCTCAGAAAAGCCGTGCCTTTTGTGGAAAATCATACTGA
GTACAGCACGTCGCCAGAATATAAACAACAATCCAGCAGTCCTTATAAGC
TATCTCTTCACATTTCGGCATACAGAACATTCAAGTGAATGTTGATATCC
CTCCTGATCTAATATTGTGGCTTGGGAATTCTTTGGCTTATATACAACAC
GAATACCCCGCTACTCAAGAGATCGCTTGCCAGGCAGGGTGTTCAGCTTG
TAGCCGTGACTGACTTGTATTTCGCAAAACACCTCACCAAGCACGCTCAC
ACAGATAAAATTCATGGGTATGGTGCATAAAATAACCCCAGACCTCTTAC
GGGGTGTGGCCTTAGGCTTGCTGGGTGCCTTTGTGCTTGCCATAATGAGT
TATCACCTCACAGTATTCATATTCCGCAAGCGATTTCCAGTTCCTCCCAA
GGGGGGAGCCATCGTCATTACTGGCGCAAGCACCGGAATCGGCAACCATG
CTGCACAGCATCTGGCAAGGCAAGGTTATATCGTATACTGTACCGTACGG
AAGCCGGCAGACGTGGAAGCTATTCAGGCGCTAGGGCTGCCCAATCTGCG
ACCCATTATCATGGACGTTGCTCAGGCCAAATCCATCGAGAACGGGGCCG
AAACCATTCTGGCAGAACTTTCGAAAAATAACATTCCCCTAATTGGTCTC
GTTAATAACGCAGGCGTTGCACAGAAGTTCCCCTTGGAATTCCACCCTTT
GACGGACCTCCGCAGCATGTTCGACATCCACGTGATAGGGCCTCTCGAAC
TGACCCAGCGCCTCTTGCCCGCCATTCGAGCCAACAAAGGTCGCATCGTC
aatctctcctccatcactgCACTTGTGCTTCTTCCAACAGGGGCAGCTTA
CGGTGCCAGCAAATTGGCTGTGGAGGGGATTAGCGACGGGCTACGGCGAG
AGCTCGTCGACTTCGATTGTTCGGTGTCCATTGTACAACCCGCGTACGTC
AACACGGCCATCTTCAAAAAAGTCACCCAAAGTATCGACACAAAAGTCGA
AGTCTCGCCGGAAATCATGACTACCTACGGGTATTTTTTCCGGACCGAAA
AACGTATTAAAGACCGAGCGGCTGTGGACAAAGCAAGCCCCCCCTCTGTC
ACCACAGACGCGATAACTCATGCATTGACGTCTCCTTACCCACATACACG
CTACATCGTGGCAAATGTGAGCGGAATACCAGCATTCTGGCTGGGCTGGT
TGGTCTGGCTCTGTCCGGACCGGTTGGCGGATTTTATCATGGGAAAATTC
TCGTGAGGCAATCCAGAAAGGATGGGGAAAGGCAATAGCGTCCTGCTCAA
TCCCTTTTGAGGTATGACGCGTGCTGCAGAAGAGATGTACAATGGTGGTA
TCATAATGCGAGGCTGTAAGCATGGTCAGGTATGAGAAACGGGGATGCat
agaaggaggaaaagtgcTATTGTTCAAGCTCCGTGCTGCTTCGCGGAATA
ACTTGAACGCAATCAAGGATTCACGGGCTAAAATGAAATAAAAATTATAG
ACAAGTACAGAGTCTTTGAAAAGATGGCCAGGATCATGTACGAGAAGGAG
TttaaaaagaagaaagggggcagTTTGGCCAGAAAAA back to topCoding sequence (CDS) from alignment at CM002465.1:832209..834045+ >rna5374 ID=rna5374|Name=rna5374|organism=Nannochloropsis gaditana|type=CDS|length=993bp|location=Sequence derived from alignment at CM002465.1:832209..834045+ (Nannochloropsis gaditana)
ATGGGTATGGTGCATAAAATAACCCCAGACCTCTTACGGGGTGTGGCCTT
AGGCTTGCTGGGTGCCTTTGTGCTTGCCATAATGAGTTATCACCTCACAG
TATTCATATTCCGCAAGCGATTTCCAGTTCCTCCCAAGGGGGGAGCCATC
GTCATTACTGGCGCAAGCACCGGAATCGGCAACCATGCTGCACAGCATCT
GGCAAGGCAAGGTTATATCGTATACTGTACCGTACGGAAGCCGGCAGACG
TGGAAGCTATTCAGGCGCTAGGGCTGCCCAATCTGCGACCCATTATCATG
GACGTTGCTCAGGCCAAATCCATCGAGAACGGGGCCGAAACCATTCTGGC
AGAACTTTCGAAAAATAACATTCCCCTAATTGGTCTCGTTAATAACGCAG
GCGTTGCACAGAAGTTCCCCTTGGAATTCCACCCTTTGACGGACCTCCGC
AGCATGTTCGACATCCACGTGATAGGGCCTCTCGAACTGACCCAGCGCCT
CTTGCCCGCCATTCGAGCCAACAAAGGTCGCATCGTCaatctctcctcca
tcactgCACTTGTGCTTCTTCCAACAGGGGCAGCTTACGGTGCCAGCAAA
TTGGCTGTGGAGGGGATTAGCGACGGGCTACGGCGAGAGCTCGTCGACTT
CGATTGTTCGGTGTCCATTGTACAACCCGCGTACGTCAACACGGCCATCT
TCAAAAAAGTCACCCAAAGTATCGACACAAAAGTCGAAGTCTCGCCGGAA
ATCATGACTACCTACGGGTATTTTTTCCGGACCGAAAAACGTATTAAAGA
CCGAGCGGCTGTGGACAAAGCAAGCCCCCCCTCTGTCACCACAGACGCGA
TAACTCATGCATTGACGTCTCCTTACCCACATACACGCTACATCGTGGCA
AATGTGAGCGGAATACCAGCATTCTGGCTGGGCTGGTTGGTCTGGCTCTG
TCCGGACCGGTTGGCGGATTTTATCATGGGAAAATTCTCGTGA back to top
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