rna5373, rna5373 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5373
Unique Name	rna5373
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1309
Alignment location	CM002465.1:830081..831809 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100135g13.5866.mrna
Orig protein id	gnl\|cribi\|Naga_100135g13.5866
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002465.1	supercontig	CM002465.1:830081..831809 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100135g13	gene5194	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5373	rna5373-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25309.1	cds5360	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002465.1:830081..831809+
coding sequence from alignment at CM002465.1:830081..831809+

mRNA sequence

>rna5373 ID=rna5373|Name=rna5373|organism=Nannochloropsis gaditana|type=mRNA|length=1309bp
ACCCTGACGGCCCCTGATACTCCCTCATTCTGATGCCTGCTCATATGCCC
TCCGTCCTATTTGCCTACAGTTATCACTCTGATGCTTTATCGTATTCCTT
GCCATGCACCATTTACTTCGATACAGCCAACGCTCCTGTAATGGAAGCAG
CTCTTGAGCCTTCAATACCCCCTTCAAACTTGCCCTCCCATTCCTCAGCT
CCATCGTCGGATGACCCTCTTTTATCCGTCTTTCGAAGTCATTTGGAGAA
AAATGTTCCCGTCCCTATAGCAGGGGTGCAGACTCTCCTCCATGTGATGA
GTAGCAGTCGTGCGGTCACAATAATGGGAATTCAAAATGATCTCAAAGCA
GCGACGAGCGAGTTAATTGAATATGAACGGAGGATAAGTGGTGGTCGGGC
CTCCATTTCCTTCCGTGCCTGCGTCGAGCTTTTTTTCCGGTATGCAACAC
GCAAGAACGACGATGTCCCTGATTTTGAGACGCTGAACAAACTTTTCATC
GCACGTGGACATCATTTTGTGGCGAATGCTTTGAAGAGCCGGCTTGGGAT
TGCCGAGCTCGGGCATAGCTTCGTGCAAGATGGCATGATGATCCTCACCC
ACGGACGCTCCGAAGTCGTCACCGGCGTCCTCATCCGTGCTGCACAAAGC
AACAAAAATTTCACGGTGATGGTGACGGAAGGACGTCCGGAAGGGTCAGG
TTTCAAAGCCGCCGAGCGTTTGACAGAAGCCGGGATCCCCGTCACGGTGA
TATTGGACTCGGCCGCCGCATACTTCATGGAGCGCGTCGACATAGTCTTG
CTCGGAGCAGAGGGCGTGGTTGAAAGCGGAGGGATCGTGAACAAAATTGG
GACGTGTCAATTGGCCATGGTGGCGAAGTTGTACAACAAGCCTTTGTATG
TGGCGGCTGAATCATACAAGTTTGCTCGCTTGTACCCGCTGACACAGGCC
GACTTGGAGGACAATGTAGACAACGACGTAGAGAAACCACTGTTTCCACC
TTTACTTACCGGCATAGAGGGTGGGACGGCAACGGGGAAGGTGGAGGAGG
GGGAAGGGCGGCATAGACAGGAGAGGGGAAGCTCGGGGAACCTATTAGGT
AAGAACACCATTTTCGACAGCGGGCCCGGCGTTGCCGCCATGACGACGAA
GAACCCCAGCTGCGACTATACGCCTGCCCAGTACATCAGCCTTCTGTTTA
CAGATCTGGGAATTTTGACGCCGGCTGCCGTTTCGGACGAGCTGATCAAG
CTTTATCAATGACAAGGCTCCCACGGGGACAAAAGAAAGCAACTAGCAAT
CGATATCAA

protein sequence of rna5373

>rna5373-protein ID=rna5373-protein|Name=rna5373|organism=Nannochloropsis gaditana|type=polypeptide|length=238bp
MAKYHILLLIGLLGATGKGVAAFLLPVSLGPASDAQLPSPPLATTLGYGI
PRSPFILSPLYAAADTAMDGSSDEDDEEVVPGKMKVSEIKAELDLRGVTS
AGVVDRAELEALLLKARIEGKARPEILDTFNEQREAEEARKGKKPDFDWD
AAKAGDGNLPGGVDPEALQKLTSSQEMMEIMSNPRLQELMKAVMSKDQDV
IQKYMADAEVLQLMARFQKLSAEAGLDPSKFPPPPGME

mRNA from alignment at CM002465.1:830081..831809+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5373 ID=rna5373|Name=rna5373|organism=Nannochloropsis gaditana|type=mRNA|length=1729bp|location=Sequence derived from alignment at CM002465.1:830081..831809+ (Nannochloropsis gaditana)
CCTCTAACTCCCGGCCTGCACACATATTATCGACAATTGCATTGGCAGGC
ACGTGAAACATATATCTCATCATAAAGGGAGAATCCTTTTGAGAGGGTAG
AAAAGGCCTTGGAGTCAGCAGacctcgacctcccgccACTGCCTAACGAA
GTTGCCCTACTGCAAACTGCCTCTACTTCTGGACAATTTAAAACGATCAG
CGCCTATAATCGTAAGCACAAGGGTATAAATGGCCAAATATCACATCCTC
TTGCTCATTGGCTTGCTCGGTGCAACTGGAAAGGGCGTCGCAGCATTTCT
GCTCCCAGTATCATTGGGACCTGCCTCAGGTTTGTCAGAAGTCACGGGGG
CAATAAAGTGATTGCCGTTCGAATCATACCGCCGCAATATTGTGCTTTCG
GTGATCTTACATTTTATTTCCTAACGATTGGTATAATTGCTCTCTCTTCT
CGAAAAAGATGCCCAACTCCCTAGTCCCCCCCTGGCGACCACTCTCGGGT
ACGGCATCCCCCGGAGCCCCTTCATCCTCTCGCCTCTGTACGCGGCAGCG
GACACTGCCATGGATGGATCGTCCgatgaagacgacgaggaagtcgTGCC
GGGCAAGATGAAAGTGAGCGAAATTAAAGCCGAGCTGGATTTGAGGGGCG
TTACTTCCGCAGGCGTTGTCGACAGAGCTGAGCTGGAGGCTCTCCTGCTC
AAGGCCCGAATTGAAGGGAAAGCACGACCTGAAATATTGGACACTTTTAA
TGAACAGCGGTAGGATTGGAGGAATTCTGGTGTggcggagggacggaggg
gtaGGCGTCGTGCGAATGAGGCGGCGTTGGGAACGATGCGTGAAAATTGA
CGGAAGTACACGTGTGCACCCTAGTGAGAAGGATTGATGTGGAACTATCA
ATGGTAAATGTCAAATAGAGATGCCCGCTAGGCTTACTCATTTCCTGTCC
CATGTTTTCTCACGCtagagaggcggaggaagcgcggaagggaaagaaac
cAGACTTTGACTGGGACGCCGCGAAGGCGGGCGATGGTGCGTAGAATACT
TGAACATTCAATAAAGGAGATATTTGTCTTGTATCGCCTCGATACCGTGA
TTTTTAATCGTCCCGTAAGGGTACTTAAACTCTACCCCCCTGACGCTTGC
TTTTTTTTGATTCAACAGGCAACCTCCCTGGGGGGGTGGACCCGGAGGCC
TTGCAGAAATTGACGAGCAGTCAAGAGATGATGGAAATTATGAGCAATCC
CCGTCTGCAGGTCAGTCTCAGAGCAATGACCGCGCCTCTCTGTACTTCTA
TGTTTGACTCTCACACGTATCACAGGAATTGATGAAAGCTGTCATGTCCA
AGGACCAGGACGTCATTCAAAAGTACATGGCCGACGCTGAAGTTCTACAA
CTTATGGCTCGCTTCCAAAAGCTATCAGCAGAAGCGGGTCTGGATCCATC
CAAgtttccaccgcccccaggGATGGAATGATAGTGCTGGACCATCCTCA
TGACGGCATTTGGGGGTCAGTCCTTTCTTTGAGAAGGGCGGTATCGAACA
ACATGAAGCTACAGACACTTGCGCGGATAATATTTAGATTATAGAGTATT
CGTTGTGCTCCTCGTGCGGGGAAAAATTAGGCATGGGTATTATGGTGCCG
CCGCTTTGTCGCCGCGGAAAAGACGCGACAATCAGCCGCGCCTAAAGAAA
ATAAATGAAAATTAAGGCGCGCCCTTGGA

Coding sequence (CDS) from alignment at CM002465.1:830081..831809+

>rna5373 ID=rna5373|Name=rna5373|organism=Nannochloropsis gaditana|type=CDS|length=3585bp|location=Sequence derived from alignment at CM002465.1:830081..831809+ (Nannochloropsis gaditana)
ATGGCCAAATATCACATCCTCTTGCTCATTGGCTTGCTCGGTGCAACTGG
AAAGGGCGTCGCAGCATTTCTGCTCCCAGTATCATTGGGACCTGCCTCAG
ATGCCCAACTCCCTAGTCCCCCCCTGGCGACCACTCTCGGGTACGGCATC
CCCCGGAGCCCCTTCATCCTCTCGCCTCTGTACGCGGCAGCGGACACTGC
CATGGATGGATCGTCCgatgaagacgacgaggaagtcgTGCCGGGCAAGA
TGAAAGTGAGCGAAATTAAAGCCGAGCTGGATTTGAGGGGCGTTACTTCC
GCAGGCGTTGTCGACAGAGCTGAGCTGGAGGCTCTCCTGCTCAAGGCCCG
AATTGAAGGGAAAGCACGACCTGAAATATTGGACACTTTTAATGAACAGC
GagaggcggaggaagcgcggaagggaaagaaaccAGACTTTGACTGGGAC
GCCGCGAAGGCGGGCGATGGCAACCTCCCTGGGGGGGTGGACCCGGAGGC
CTTGCAGAAATTGACGAGCAGTCAAGAGATGATGGAAATTATGAGCAATC
CCCGTCTGCAGGAATTGATGAAAGCTGTCATGTCCAAGGACCAGGACGTC
ATTCAAAAGTACATGGCCGACGCTGAAGTTCTACAACTTATGGCTCGCTT
CCAAAAGCTATCAGCAGAAGCGGGTCTGGATCCATCCAAgtttccaccgc
ccccaggGATGGAATGAATGGCCAAATATCACATCCTCTTGCTCATTGGC
TTGCTCGGTGCAACTGGAAAGGGCGTCGCAGCATTTCTGCTCCCAGTATC
ATTGGGACCTGCCTCAGATGCCCAACTCCCTAGTCCCCCCCTGGCGACCA
CTCTCGGGTACGGCATCCCCCGGAGCCCCTTCATCCTCTCGCCTCTGTAC
GCGGCAGCGGACACTGCCATGGATGGATCGTCCgatgaagacgacgagga
agtcgTGCCGGGCAAGATGAAAGTGAGCGAAATTAAAGCCGAGCTGGATT
TGAGGGGCGTTACTTCCGCAGGCGTTGTCGACAGAGCTGAGCTGGAGGCT
CTCCTGCTCAAGGCCCGAATTGAAGGGAAAGCACGACCTGAAATATTGGA
CACTTTTAATGAACAGCGagaggcggaggaagcgcggaagggaaagaaac
cAGACTTTGACTGGGACGCCGCGAAGGCGGGCGATGGCAACCTCCCTGGG
GGGGTGGACCCGGAGGCCTTGCAGAAATTGACGAGCAGTCAAGAGATGAT
GGAAATTATGAGCAATCCCCGTCTGCAGGAATTGATGAAAGCTGTCATGT
CCAAGGACCAGGACGTCATTCAAAAGTACATGGCCGACGCTGAAGTTCTA
CAACTTATGGCTCGCTTCCAAAAGCTATCAGCAGAAGCGGGTCTGGATCC
ATCCAAgtttccaccgcccccaggGATGGAATGAATGGCCAAATATCACA
TCCTCTTGCTCATTGGCTTGCTCGGTGCAACTGGAAAGGGCGTCGCAGCA
TTTCTGCTCCCAGTATCATTGGGACCTGCCTCAGATGCCCAACTCCCTAG
TCCCCCCCTGGCGACCACTCTCGGGTACGGCATCCCCCGGAGCCCCTTCA
TCCTCTCGCCTCTGTACGCGGCAGCGGACACTGCCATGGATGGATCGTCC
gatgaagacgacgaggaagtcgTGCCGGGCAAGATGAAAGTGAGCGAAAT
TAAAGCCGAGCTGGATTTGAGGGGCGTTACTTCCGCAGGCGTTGTCGACA
GAGCTGAGCTGGAGGCTCTCCTGCTCAAGGCCCGAATTGAAGGGAAAGCA
CGACCTGAAATATTGGACACTTTTAATGAACAGCGagaggcggaggaagc
gcggaagggaaagaaaccAGACTTTGACTGGGACGCCGCGAAGGCGGGCG
ATGGCAACCTCCCTGGGGGGGTGGACCCGGAGGCCTTGCAGAAATTGACG
AGCAGTCAAGAGATGATGGAAATTATGAGCAATCCCCGTCTGCAGGAATT
GATGAAAGCTGTCATGTCCAAGGACCAGGACGTCATTCAAAAGTACATGG
CCGACGCTGAAGTTCTACAACTTATGGCTCGCTTCCAAAAGCTATCAGCA
GAAGCGGGTCTGGATCCATCCAAgtttccaccgcccccaggGATGGAATG
AATGGCCAAATATCACATCCTCTTGCTCATTGGCTTGCTCGGTGCAACTG
GAAAGGGCGTCGCAGCATTTCTGCTCCCAGTATCATTGGGACCTGCCTCA
GATGCCCAACTCCCTAGTCCCCCCCTGGCGACCACTCTCGGGTACGGCAT
CCCCCGGAGCCCCTTCATCCTCTCGCCTCTGTACGCGGCAGCGGACACTG
CCATGGATGGATCGTCCgatgaagacgacgaggaagtcgTGCCGGGCAAG
ATGAAAGTGAGCGAAATTAAAGCCGAGCTGGATTTGAGGGGCGTTACTTC
CGCAGGCGTTGTCGACAGAGCTGAGCTGGAGGCTCTCCTGCTCAAGGCCC
GAATTGAAGGGAAAGCACGACCTGAAATATTGGACACTTTTAATGAACAG
CGagaggcggaggaagcgcggaagggaaagaaaccAGACTTTGACTGGGA
CGCCGCGAAGGCGGGCGATGGCAACCTCCCTGGGGGGGTGGACCCGGAGG
CCTTGCAGAAATTGACGAGCAGTCAAGAGATGATGGAAATTATGAGCAAT
CCCCGTCTGCAGGAATTGATGAAAGCTGTCATGTCCAAGGACCAGGACGT
CATTCAAAAGTACATGGCCGACGCTGAAGTTCTACAACTTATGGCTCGCT
TCCAAAAGCTATCAGCAGAAGCGGGTCTGGATCCATCCAAgtttccaccg
cccccaggGATGGAATGAATGGCCAAATATCACATCCTCTTGCTCATTGG
CTTGCTCGGTGCAACTGGAAAGGGCGTCGCAGCATTTCTGCTCCCAGTAT
CATTGGGACCTGCCTCAGATGCCCAACTCCCTAGTCCCCCCCTGGCGACC
ACTCTCGGGTACGGCATCCCCCGGAGCCCCTTCATCCTCTCGCCTCTGTA
CGCGGCAGCGGACACTGCCATGGATGGATCGTCCgatgaagacgacgagg
aagtcgTGCCGGGCAAGATGAAAGTGAGCGAAATTAAAGCCGAGCTGGAT
TTGAGGGGCGTTACTTCCGCAGGCGTTGTCGACAGAGCTGAGCTGGAGGC
TCTCCTGCTCAAGGCCCGAATTGAAGGGAAAGCACGACCTGAAATATTGG
ACACTTTTAATGAACAGCGagaggcggaggaagcgcggaagggaaagaaa
ccAGACTTTGACTGGGACGCCGCGAAGGCGGGCGATGGCAACCTCCCTGG
GGGGGTGGACCCGGAGGCCTTGCAGAAATTGACGAGCAGTCAAGAGATGA
TGGAAATTATGAGCAATCCCCGTCTGCAGGAATTGATGAAAGCTGTCATG
TCCAAGGACCAGGACGTCATTCAAAAGTACATGGCCGACGCTGAAGTTCT
ACAACTTATGGCTCGCTTCCAAAAGCTATCAGCAGAAGCGGGTCTGGATC
CATCCAAgtttccaccgcccccaggGATGGAATGA

Synonyms

Publications