EWM25309.1, cds5360 (CDS) Nannochloropsis gaditana

Overview
NameEWM25309.1
Unique Namecds5360
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:830310..830409 +
Alignment locationCM002465.1:830539..830839 +
Alignment locationCM002465.1:831049..831116 +
Alignment locationCM002465.1:831249..831340 +
Alignment locationCM002465.1:831406..831561 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25309.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100135g13.5866.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:830310..830409 +
CM002465.1supercontigCM002465.1:830539..830839 +
CM002465.1supercontigCM002465.1:831049..831116 +
CM002465.1supercontigCM002465.1:831249..831340 +
CM002465.1supercontigCM002465.1:831406..831561 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM25309.1 vs. NCBI_GenBank
Match: gi|585107064|gb|EWM25309.1| (hypothetical protein Naga_100135g13 [Nannochloropsis gaditana])

HSP 1 Score: 471.855 bits (1213), Expect = 4.936e-168
Identity = 238/238 (100.00%), Postives = 238/238 (100.00%), Query Frame = 0
Query:    1 MAKYHILLLIGLLGATGKGVAAFLLPVSLGPASDAQLPSPPLATTLGYGIPRSPFILSPLYAAADTAMDGSSDEDDEEVVPGKMKVSEIKAELDLRGVTSAGVVDRAELEALLLKARIEGKARPEILDTFNEQREAEEARKGKKPDFDWDAAKAGDGNLPGGVDPEALQKLTSSQEMMEIMSNPRLQELMKAVMSKDQDVIQKYMADAEVLQLMARFQKLSAEAGLDPSKFPPPPGME 238
            MAKYHILLLIGLLGATGKGVAAFLLPVSLGPASDAQLPSPPLATTLGYGIPRSPFILSPLYAAADTAMDGSSDEDDEEVVPGKMKVSEIKAELDLRGVTSAGVVDRAELEALLLKARIEGKARPEILDTFNEQREAEEARKGKKPDFDWDAAKAGDGNLPGGVDPEALQKLTSSQEMMEIMSNPRLQELMKAVMSKDQDVIQKYMADAEVLQLMARFQKLSAEAGLDPSKFPPPPGME
Sbjct:    1 MAKYHILLLIGLLGATGKGVAAFLLPVSLGPASDAQLPSPPLATTLGYGIPRSPFILSPLYAAADTAMDGSSDEDDEEVVPGKMKVSEIKAELDLRGVTSAGVVDRAELEALLLKARIEGKARPEILDTFNEQREAEEARKGKKPDFDWDAAKAGDGNLPGGVDPEALQKLTSSQEMMEIMSNPRLQELMKAVMSKDQDVIQKYMADAEVLQLMARFQKLSAEAGLDPSKFPPPPGME 238          
BLAST of EWM25309.1 vs. NCBI_GenBank
Match: gi|551546436|ref|XP_005761135.1| (hypothetical protein EMIHUDRAFT_371912 [Emiliania huxleyi CCMP1516] >gi|551564867|ref|XP_005768960.1| hypothetical protein EMIHUDRAFT_370338 [Emiliania huxleyi CCMP1516] >gi|485609811|gb|EOD08706.1| hypothetical protein EMIHUDRAFT_371912 [Emiliania huxleyi CCMP1516] >gi|485619790|gb|EOD16531.1| hypothetical protein EMIHUDRAFT_370338 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 107.457 bits (267), Expect = 2.707e-25
Identity = 65/166 (39.16%), Postives = 98/166 (59.04%), Query Frame = 0
Query:   56 ILSPLYAAADTAMDGSSDEDDEEVVPGKMKVSEIKAELDLRGVTSAGVVDRAELEALLLKARIEGKARPEILDTFNEQREAEEARKGKKPDFDWDA---AKAGDGNLPGGVDPEALQKLTSSQEMMEIMSNPRLQELMKAVMSKDQDVIQKYMADAEVLQLMARFQ 218
            I  P    A    + ++DED       +M+VSE+KAELDLR  +  GV+++ EL  +L  AR +G A P+I+D+FN+     E     +P  D DA   A A DG LPGG+ PE L KLT   E+M ++ NP++Q++MK VMS   +   + MAD +V +++ +F+
Sbjct:   30 IFGPRSLHARLCTEPAADEDATYEACMRMRVSELKAELDLRKQSYEGVMEKDELARMLADARSQGLADPDIVDSFNKANL--ENAYNPQPAVDPDAVAEAVASDGGLPGGMSPETLMKLTQDPELMAMLRNPKMQDVMKKVMSSGPEAAAEMMADPDVAEMLEKFK 193          
BLAST of EWM25309.1 vs. NCBI_GenBank
Match: gi|922852894|gb|KOO21548.1| (conserved unknown protein [Chrysochromulina sp. CCMP291])

HSP 1 Score: 105.916 bits (263), Expect = 5.453e-23
Identity = 73/177 (41.24%), Postives = 103/177 (58.19%), Query Frame = 0
Query:   51 PRSPFILSPLYAAADTAMDGSSDEDDEEVVPGKMKVSEIKAELDLRGVTSAGVVDRAELEALLLKARIEGKARPEILDTFN----EQREAEEARKGKKP--DFDWDAAKAGDGNLPGGVDPEALQKLTSSQEMMEIMSNPRLQELMKAVMSKD-QDVIQKYMADAEVLQLMARFQKL 220
            PR+P   S ++A+ D A+D  S ++        MKVSEIKAELDLR V   G+ ++ EL  +L KAR EG+A P ++D FN    EQ      +   +P  D D D A A DG LPGG+ P+ LQ  T   E+M ++ NP+LQ+LM+ +M+   Q   +   +DAE   L++RFQ L
Sbjct:  245 PRAP-PRSRIFASDDAAIDVESVKE-----CMGMKVSEIKAELDLRKVKWDGLFEKEELAKVLAKARREGRADPLLIDQFNTMSVEQAWEATPQTTSEPAADVDLDEATAADGTLPGGMSPDMLQAATQDPEIMALLRNPKLQDLMRKMMAAGPQAASEMLSSDAEARMLLSRFQAL 415          
BLAST of EWM25309.1 vs. NCBI_GenBank
Match: gi|224006704|ref|XP_002292312.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220971954|gb|EED90287.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 100.908 bits (250), Expect = 1.682e-22
Identity = 57/146 (39.04%), Postives = 86/146 (58.90%), Query Frame = 0
Query:   80 VPGKMKVSEIKAELDLRGVTSAGVVDRAELEALLLKARIEGKARPEILDTFNEQREAEEARKGKK----PDFDWDAAKAGDGNLPGGVDPEALQKLTSSQEMMEIMSNPRLQELMKAVMSKDQDVIQKYMA-DAEVLQLMARFQKL 220
            +PG+MK+SEIK+ELDLR V      DR  LE  L +AR  GKA P ++D FN +R  E   KG+      D   ++A  GDG LPGG+ P+ L+ + S  E++ ++ +P++QE+MK VM   QD ++  M  D E  + + +   +
Sbjct:   67 LPGQMKISEIKSELDLRKVNYNDCFDREALEIRLNEARCSGKADPSLIDEFN-RRNLEANVKGEDALEVTDNMLESAVGGDGTLPGGLPPDMLKSMMSDPELVNMLRSPKMQEVMKLVMEGGQDALEDAMTNDKEAYECVTKLNSI 211          
BLAST of EWM25309.1 vs. NCBI_GenBank
Match: gi|298711330|emb|CBJ32476.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 99.3673 bits (246), Expect = 1.237e-21
Identity = 65/165 (39.39%), Postives = 93/165 (56.36%), Query Frame = 0
Query:   72 SDEDDEEVVPGKMKVSEIKAELDLRGVTSAGVVDRAELEALLLKARIEGKARPEILDTFN----EQREAEEARKGKKPDF----DWDAAKAGDGNLPGGVDPEALQKLTSSQEMMEIMSNPRLQELMKAVMSKDQDVIQKYMADAEVLQLMARFQKLSAEAGLDP 228
            +D D E V   KM+ SEIKAELD+RGV   G+ ++ EL   L++AR  G+A P I+D FN    E R   E   G   D           A DG LPGG+ PE L K+ S+ E+M +M NP+LQE+MK VM+   + +++   D E  +L+ + +  +A  G+ P
Sbjct:   86 TDPDAEGVA--KMRASEIKAELDMRGVGYTGIFEKDELVERLIEARSLGRADPSIIDDFNKENLENRMDPERAAGFADDLLNEEKLKDLTAADGTLPGGMTPEMLSKMVSNPELMVLMQNPKLQEIMKKVMADGPEAMEELQGDPETAELLKKLE--AAMGGMQP 246          
BLAST of EWM25309.1 vs. NCBI_GenBank
Match: gi|397610153|gb|EJK60682.1| (hypothetical protein THAOC_18921 [Thalassiosira oceanica])

HSP 1 Score: 98.5969 bits (244), Expect = 1.324e-21
Identity = 77/226 (34.07%), Postives = 114/226 (50.44%), Query Frame = 0
Query:   13 LGATGKGVAAF--------LLPVSLGPASDAQLPSPPLATTLGYGIPRSPFILSPLYAAADTAMD-GSSDEDDEEVVPGKMKVSEIKAELDLRGVTSAGVVDRAELEALLLKARIEGKARPEILDTFNEQREAEEARKGKK---PDFDWDAAKAGDGNLPGGVDPEALQKLTSSQEMMEIMSNPRLQELMKAVMSKDQDVIQKYMA-DAEVLQLMARFQKLSAEAG 225
            +G  G  VA F        LL  S  P + A  PSP            S  + SP  +     ++ G SD+D E   PG+M++SEIK+ELDL         DR  LE  L  AR +G+A   I+D FN +R  E + KG      D   D A AGDG LPGG+ PE L+ + +  +++ ++ +P++QE+MK VMS+ Q  ++  M  D +V + + R  ++    G
Sbjct:   12 VGTGGLPVANFEAEMTKLLLLLFSGWPGAMAFCPSP------------SSLVTSPRQSTTLRVVEVGPSDDDVEPAEPGQMRISEIKSELDLY----VDCFDRQSLEERLNDARSQGRADESIIDEFN-KRNLEASVKGDTFEVSDDMIDKATAGDGTLPGGMPPEMLKSMMNDPDLVNMLRSPKMQEIMKIVMSEGQQSLEDRMKEDKDVYECVQRLNQIMGRLG 220          
BLAST of EWM25309.1 vs. NCBI_GenBank
Match: gi|1210515463|dbj|GAX25542.1| (hypothetical protein FisN_28Hh010 [Fistulifera solaris])

HSP 1 Score: 91.6633 bits (226), Expect = 4.701e-19
Identity = 52/137 (37.96%), Postives = 83/137 (60.58%), Query Frame = 0
Query:   79 VVPGKMKVSEIKAELDLRGVTSAGVVDRAELEALLLKARIEGKARPEILDTFNEQREAEEARKGKKPDF---DWDAAKAGDGNLPGGVDPEALQKLTSSQEMMEIMSNPRLQELMKAVMSKDQDVIQKYMADAEVLQ 212
            + PG M+VSEIKAELDLR ++     D+  L   L +AR++G A P IL+ FN Q+   +    KK +    D +AA A DG +PGG+ P+  QKL ++ E+M ++ + ++QE M  +M+  +D ++K + +   LQ
Sbjct:   68 IAPGIMRVSEIKAELDLRKISYTDCFDKESLVERLQEARVKGLADPSILEKFNRQKLEADFDPSKKVEIQPDDIEAALANDGTIPGGLTPDMFQKLIANPELMAMLQSTKMQEAMTLMMTGGRDELEKKLKEDPELQ 204          
BLAST of EWM25309.1 vs. NCBI_GenBank
Match: gi|1210511697|dbj|GAX29181.1| (hypothetical protein FisN_28Lh010 [Fistulifera solaris])

HSP 1 Score: 90.8929 bits (224), Expect = 9.567e-19
Identity = 53/137 (38.69%), Postives = 82/137 (59.85%), Query Frame = 0
Query:   79 VVPGKMKVSEIKAELDLRGVTSAGVVDRAELEALLLKARIEGKARPEILDTFNEQREAEEARKGKKPDF---DWDAAKAGDGNLPGGVDPEALQKLTSSQEMMEIMSNPRLQELMKAVMSKDQDVIQKYMADAEVLQ 212
            + PG M+VSEIKAELDLR ++ A   D+  L   L  AR +G A P IL+ FN Q+   +    KK +    D +AA A DG +PGG+ P+  QKL ++ E+M ++ + ++QE M  +M+  +D ++K + +   LQ
Sbjct:   65 IAPGMMRVSEIKAELDLRKISYADCFDKESLVERLQGARAKGLADPSILEKFNRQKLEADFDPSKKVEIQPDDIEAAVANDGTIPGGLTPDMFQKLIANPELMAMLQSTKMQEAMTLMMTGGRDELEKKLKEDPELQ 201          
The following BLAST results are available for this feature:
BLAST of EWM25309.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 8
Match NameE-valueIdentityDescription
gi|585107064|gb|EWM25309.1|4.936e-168100.00hypothetical protein Naga_100135g13 [Nannochlorops... [more]
gi|551546436|ref|XP_005761135.1|2.707e-2539.16hypothetical protein EMIHUDRAFT_371912 [Emiliania ... [more]
gi|922852894|gb|KOO21548.1|5.453e-2341.24conserved unknown protein [Chrysochromulina sp. CC... [more]
gi|224006704|ref|XP_002292312.1|1.682e-2239.04predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|298711330|emb|CBJ32476.1|1.237e-2139.39conserved unknown protein [Ectocarpus siliculosus][more]
gi|397610153|gb|EJK60682.1|1.324e-2134.07hypothetical protein THAOC_18921 [Thalassiosira oc... [more]
gi|1210515463|dbj|GAX25542.1|4.701e-1937.96hypothetical protein FisN_28Hh010 [Fistulifera sol... [more]
gi|1210511697|dbj|GAX29181.1|9.567e-1938.69hypothetical protein FisN_28Lh010 [Fistulifera sol... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5373rna5373Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications