rna5370, rna5370 (mRNA) Nannochloropsis gaditana

Overview
Namerna5370
Unique Namerna5370
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length658
Alignment locationCM002465.1:822869..824483 -

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Properties
Property NameValue
Producttranscription regulatory protein
Orig transcript idgnl|cribi|Naga_100135g16.5868.mrna
Orig protein idgnl|cribi|Naga_100135g16.5868
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:822869..824483 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100135g16gene5191Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5370rna5370-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25311.1cds5357Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5370 ID=rna5370|Name=rna5370|organism=Nannochloropsis gaditana|type=mRNA|length=658bp
GTCAGTCATTGCAACGGTCATGCCTAATTTACTACGACCCAGCACCTGAA
AAGTATACCAGGCAGGCCTTGGACGTACACCCCCAGCTTATAGAAAAGCC
TTATTTGACTTTTAGGCTGGAATAGGGTTATTGTGCTGGCGTTTAAAGTT
ATAAACCAATAAACTGGAGTCAGCTTGCAATCCTGTAGATCGCGGTCTCT
GTGATATCCGTTTACTAGCCGAAGAAAAACCCAACACATTCGTACATGCT
CCTATTATATCAAATAGGATGGGAGCCCTTTGTTGTTGTGCACGCGGTGG
CACGACTGCATCTGCCGGTGACACACATGGAGACCATGGCGCTATCCCAT
ACGTCCTAAGTGCACACGAGAAGGAAGCACTCCGGGCACGCCGCGCAGAG
GCTGCAGAGGCCCGGAGAAACAATTTTAAGCAAGGGGGTGGAGGCGAGCG
ATTGAAGGAGCAGACGGAACGAAGAGAACAGGCACAACGGGATGCGGCGT
TCACAGGGCAGAATGCCATGCAATGGGGGACCAAATAAGGATAAGATGAA
CGAGTTCTCGTGTAAAATACCCAAGACTGGACATGTCAAACCAAAGCAAG
TGTACCAATCAAAAAAAAGATGTATGAATTTATAGTCATGATCAACATCT
GGGGACCA
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protein sequence of rna5370

>rna5370-protein ID=rna5370-protein|Name=rna5370|organism=Nannochloropsis gaditana|type=polypeptide|length=236bp
MREKELRQVVLSKEEESLVLCQLHSVLRPFLLRRTKSQVLSHLPRKQERL
LACPLSAWQRRLYRLLEDLSRAHSPAPTYLLPPSSAPRLTTSNLLNQLRK
VLGRRPLIFSQFTTSLDLIEDFFIHRGMPYCRLDGRTPADARAEIIAEFN
CGRRASFMAFLITTRAGGVGLNLQAGADTVILFDSDWNPQSDAQAMARCH
RIGQTEEVLVLRLVSGDNKCGRQLQDVRPLMRIKAD
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mRNA from alignment at CM002465.1:822869..824483-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5370 ID=rna5370|Name=rna5370|organism=Nannochloropsis gaditana|type=mRNA|length=1615bp|location=Sequence derived from alignment at CM002465.1:822869..824483- (Nannochloropsis gaditana)
ATGCGGGAGAAGGAGCTCCGACAGGTGGTGCTGAGCAAGGAGGAGGAGAG
TCTGGTCCTCTGCCAGCTGCACAGCGTCCTCCGCCCCTTCCTTCTCCGGC
GCACCAAGTCTCAAGTCCTGTCTCACCTTCCCCGGAAACAAGAGCGGCTT
CTCGCTTGCCCCCTCTCCGCCTGGCAACGTCGGCTCTACCGCCTATTGGA
AGATCTGTCCCGTGCCCATTCCCCCGCCCCCACCTACCTCCTTCCCCCGT
CCTCCGCCCCTCGTCTCACCACCTCCAACCTCCTCAACCAGCTCCGCAAG
GTCTGTAACCACCCCTTCCTTCTCCTCGACTCCCAGGACCTCGGCCGCTT
TCTCCCCTCCTCGTCCTCCTCCCTCTTCCCTCTCGCCACCACCTCCCCTT
TCTTCCTCTCCTCCTCTGGGAAGCTCCTTGTCCTCGCCCGCCTCCTGCGC
CGGCTCCAGGTCCTGGGTCGTCGACCCCTGATATTCTCCCAGTTCACAAC
ATCCCTCGACCTGATCGAGGACTTCTTTATCCATCGGGGGATGCCCTATT
GCCGTCTCGACGGTCGGACGCCAGCTGACGCCCGCGCGGAGATAATCGCC
GAATTCAACTGCGGAAGACGGGCCTCGTTCATGGCCTTTTTGATTACCAC
CCGGGCGGGTGGGGTCGGTCTCAACCTCCAGGCAGGCGCCGACACGGTGA
TTCTCTTCGACAGCGATTGGAACCCACAGAGCGACGCGCAAGCCATGGCG
CGTTGCCACCGGATCGGCCAGACCGAGGAGGTGCTTGTGCTCAGGCTCGT
ATCGGTGGGGAAGGGAGGAGGAGGGAAGACGGTGGAGGAAGATTTGCTGG
AGGTGGCGCGGGCCAAGATGAAGAAGGAGGCGACCGTGATTGGGCGGGGG
AGGTTCACGTGGGATGCTGATGGGGAGGGAGGAAGGGGTGGAGGTGAAGA
GGAGGGGCAAGATGTAAGATGCCTTGGCCAGAAGACGGAAGGGAGCGGAA
AGGGGTCTGGAAGTGGAGAGGGAGCCCAGGCGTGGACCGACGGGGAAAGT
AAGAATATGAGCGAAGGGGAGAGGCACAGGGGAAAAAGCCTTGCGAAAGA
GGTAGAGAAGCTCGCGTTTCCGTCACACCTGCTGAGCAAGCAGGCGCTGG
ACGTGGCGTGCGCGCGAAACGAGCACGAGCTGGAACGATTGCAAGCGATC
GATGTAGAGGAGTATGATAGATTGATGGAGGAAAGGGACATACCCGAGTG
GTGGGAGTGGCTGGAAGGGGAAATGAGGAAAGGAGGGGAAGAGGAAGCAC
GTACAGTGGAAGGGAAGAGGAAGCGGCAGAGGACTGGGCGGTACGCCACG
CTGGATGAATCAGCGATGTTCAAACAACAGGTGAAGGAGATGAGGGAGGC
AATGGAAGAGCAGACATCGAAGGGGCAGGAGGGAGAAACAGGCGGAAGGA
AGGAGAAGGCATGTGCAGGGCGGAGGCCTGACAGCCAAACGAGGCGGGTA
GAGTCTCAAGACAGCAGAAGCACGGCCTCACGCACCCAAAATACAGTAGG
GAGACAACAAATGTGGGAGGCAGCTGCAAGACGTGCGGCCCTTGATGAGA
ATAAAAGCCGATTGA
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Coding sequence (CDS) from alignment at CM002465.1:822869..824483-

>rna5370 ID=rna5370|Name=rna5370|organism=Nannochloropsis gaditana|type=CDS|length=2133bp|location=Sequence derived from alignment at CM002465.1:822869..824483- (Nannochloropsis gaditana)
GGAGACAACAAATGTGGGAGGCAGCTGCAAGACGTGCGGCCCTTGATGAG
AATAAAAGCCGATTGAGTCCTGGGTCGTCGACCCCTGATATTCTCCCAGT
TCACAACATCCCTCGACCTGATCGAGGACTTCTTTATCCATCGGGGGATG
CCCTATTGCCGTCTCGACGGTCGGACGCCAGCTGACGCCCGCGCGGAGAT
AATCGCCGAATTCAACTGCGGAAGACGGGCCTCGTTCATGGCCTTTTTGA
TTACCACCCGGGCGGGTGGGGTCGGTCTCAACCTCCAGGCAGGCGCCGAC
ACGGTGATTCTCTTCGACAGCGATTGGAACCCACAGAGCGACGCGCAAGC
CATGGCGCGTTGCCACCGGATCGGCCAGACCGAGGAGGTGCTTGTGCTCA
GGCTCGTATCGATGCGGGAGAAGGAGCTCCGACAGGTGGTGCTGAGCAAG
GAGGAGGAGAGTCTGGTCCTCTGCCAGCTGCACAGCGTCCTCCGCCCCTT
CCTTCTCCGGCGCACCAAGTCTCAAGTCCTGTCTCACCTTCCCCGGAAAC
AAGAGCGGCTTCTCGCTTGCCCCCTCTCCGCCTGGCAACGTCGGCTCTAC
CGCCTATTGGAAGATCTGTCCCGTGCCCATTCCCCCGCCCCCACCTACCT
CCTTCCCCCGTCCTCCGCCCCTCGTCTCACCACCTCCAACCTCCTCAACC
AGCTCCGCAAGGGAGACAACAAATGTGGGAGGCAGCTGCAAGACGTGCGG
CCCTTGATGAGAATAAAAGCCGATTGAGTCCTGGGTCGTCGACCCCTGAT
ATTCTCCCAGTTCACAACATCCCTCGACCTGATCGAGGACTTCTTTATCC
ATCGGGGGATGCCCTATTGCCGTCTCGACGGTCGGACGCCAGCTGACGCC
CGCGCGGAGATAATCGCCGAATTCAACTGCGGAAGACGGGCCTCGTTCAT
GGCCTTTTTGATTACCACCCGGGCGGGTGGGGTCGGTCTCAACCTCCAGG
CAGGCGCCGACACGGTGATTCTCTTCGACAGCGATTGGAACCCACAGAGC
GACGCGCAAGCCATGGCGCGTTGCCACCGGATCGGCCAGACCGAGGAGGT
GCTTGTGCTCAGGCTCGTATCGATGCGGGAGAAGGAGCTCCGACAGGTGG
TGCTGAGCAAGGAGGAGGAGAGTCTGGTCCTCTGCCAGCTGCACAGCGTC
CTCCGCCCCTTCCTTCTCCGGCGCACCAAGTCTCAAGTCCTGTCTCACCT
TCCCCGGAAACAAGAGCGGCTTCTCGCTTGCCCCCTCTCCGCCTGGCAAC
GTCGGCTCTACCGCCTATTGGAAGATCTGTCCCGTGCCCATTCCCCCGCC
CCCACCTACCTCCTTCCCCCGTCCTCCGCCCCTCGTCTCACCACCTCCAA
CCTCCTCAACCAGCTCCGCAAGGGAGACAACAAATGTGGGAGGCAGCTGC
AAGACGTGCGGCCCTTGATGAGAATAAAAGCCGATTGAGTCCTGGGTCGT
CGACCCCTGATATTCTCCCAGTTCACAACATCCCTCGACCTGATCGAGGA
CTTCTTTATCCATCGGGGGATGCCCTATTGCCGTCTCGACGGTCGGACGC
CAGCTGACGCCCGCGCGGAGATAATCGCCGAATTCAACTGCGGAAGACGG
GCCTCGTTCATGGCCTTTTTGATTACCACCCGGGCGGGTGGGGTCGGTCT
CAACCTCCAGGCAGGCGCCGACACGGTGATTCTCTTCGACAGCGATTGGA
ACCCACAGAGCGACGCGCAAGCCATGGCGCGTTGCCACCGGATCGGCCAG
ACCGAGGAGGTGCTTGTGCTCAGGCTCGTATCGATGCGGGAGAAGGAGCT
CCGACAGGTGGTGCTGAGCAAGGAGGAGGAGAGTCTGGTCCTCTGCCAGC
TGCACAGCGTCCTCCGCCCCTTCCTTCTCCGGCGCACCAAGTCTCAAGTC
CTGTCTCACCTTCCCCGGAAACAAGAGCGGCTTCTCGCTTGCCCCCTCTC
CGCCTGGCAACGTCGGCTCTACCGCCTATTGGAAGATCTGTCCCGTGCCC
ATTCCCCCGCCCCCACCTACCTCCTTCCCCCGTCCTCCGCCCCTCGTCTC
ACCACCTCCAACCTCCTCAACCAGCTCCGCAAG
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Synonyms
Publications