EWM25311.1, cds5357 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25311.1 vs. NCBI_GenBank
Match: gi|585107066|gb|EWM25311.1| (transcription regulatory protein [Nannochloropsis gaditana]) HSP 1 Score: 480.33 bits (1235), Expect = 1.485e-171 Identity = 236/236 (100.00%), Postives = 236/236 (100.00%), Query Frame = 0
Query: 1 MREKELRQVVLSKEEESLVLCQLHSVLRPFLLRRTKSQVLSHLPRKQERLLACPLSAWQRRLYRLLEDLSRAHSPAPTYLLPPSSAPRLTTSNLLNQLRKVLGRRPLIFSQFTTSLDLIEDFFIHRGMPYCRLDGRTPADARAEIIAEFNCGRRASFMAFLITTRAGGVGLNLQAGADTVILFDSDWNPQSDAQAMARCHRIGQTEEVLVLRLVSGDNKCGRQLQDVRPLMRIKAD 236
MREKELRQVVLSKEEESLVLCQLHSVLRPFLLRRTKSQVLSHLPRKQERLLACPLSAWQRRLYRLLEDLSRAHSPAPTYLLPPSSAPRLTTSNLLNQLRKVLGRRPLIFSQFTTSLDLIEDFFIHRGMPYCRLDGRTPADARAEIIAEFNCGRRASFMAFLITTRAGGVGLNLQAGADTVILFDSDWNPQSDAQAMARCHRIGQTEEVLVLRLVSGDNKCGRQLQDVRPLMRIKAD
Sbjct: 1 MREKELRQVVLSKEEESLVLCQLHSVLRPFLLRRTKSQVLSHLPRKQERLLACPLSAWQRRLYRLLEDLSRAHSPAPTYLLPPSSAPRLTTSNLLNQLRKVLGRRPLIFSQFTTSLDLIEDFFIHRGMPYCRLDGRTPADARAEIIAEFNCGRRASFMAFLITTRAGGVGLNLQAGADTVILFDSDWNPQSDAQAMARCHRIGQTEEVLVLRLVSGDNKCGRQLQDVRPLMRIKAD 236
BLAST of EWM25311.1 vs. NCBI_GenBank
Match: gi|1098425533|gb|OII73658.1| (hypothetical protein cubi_03456 [Cryptosporidium ubiquitum]) HSP 1 Score: 171.785 bits (434), Expect = 2.481e-45 Identity = 101/228 (44.30%), Postives = 136/228 (59.65%), Query Frame = 0
Query: 11 LSKEEESLVLCQLHSVLRPFLLRRTKSQVLSHLPRKQERLLACPLSAWQRRLYRLLEDLSRAHSPAPTYLLPPSSAPRLTTS---------------------NLLNQLRKVLGRRPLIFSQFTTSLDLIEDFFIHRGMPYCRLDGRTPADARAEIIAEFNCGRRASFMAFLITTRAGGVGLNLQAGADTVILFDSDWNPQSDAQAMARCHRIGQTEEVLVLRLVSGD 217
+S+EE+ L++ +LH VLRPFLLRR K QV + +P K E +L CPLS Q+ LY+ LE+ + L + P L ++ ++L +LR G R LIFSQ T L L+E F R MP+ RLDG T ++ R E + FN + + FL++T+AGG G+NLQ+ ADTVILFDSDWNPQ+D QA +R HRIGQ +EVL LR V+ D
Sbjct: 975 ISEEEQLLIVDRLHKVLRPFLLRREKIQVANEVPPKLEEILWCPLSGLQQYLYKELENNENSGPNVLMQLRKVCNHPFLFSTEIQYPSDESIVRVCGKFVMLDSILPKLRAA-GHRVLIFSQMTKLLTLLEVFLSLRNMPFLRLDGTTLSEDRQESLKLFN-AENSPYFVFLLSTKAGGFGINLQS-ADTVILFDSDWNPQNDEQAQSRAHRIGQKKEVLTLRFVTPD 1199
BLAST of EWM25311.1 vs. NCBI_GenBank
Match: gi|66359910|ref|XP_627133.1| (brahma like protein with a HSA domain, SNF2 like helicase and a bromo domain [Cryptosporidium parvum Iowa II] >gi|46228555|gb|EAK89425.1| brahma like protein with a HSA domain, SNF2 like helicase and a bromo domain [Cryptosporidium parvum Iowa II]) HSP 1 Score: 171.4 bits (433), Expect = 3.096e-45 Identity = 101/228 (44.30%), Postives = 135/228 (59.21%), Query Frame = 0
Query: 11 LSKEEESLVLCQLHSVLRPFLLRRTKSQVLSHLPRKQERLLACPLSAWQRRLYRLLEDLSRAHSPAPTYLLPPSSAPRLTTS---------------------NLLNQLRKVLGRRPLIFSQFTTSLDLIEDFFIHRGMPYCRLDGRTPADARAEIIAEFNCGRRASFMAFLITTRAGGVGLNLQAGADTVILFDSDWNPQSDAQAMARCHRIGQTEEVLVLRLVSGD 217
+S+EE+ L++ +LH VLRPFLLRR K QV + +P K E +L CPLS Q+ LY+ LE + L + P L ++ ++L +LR G R LIFSQ T L L+E F R MP+ RLDG T ++ R E + FN + + FL++T+AGG G+NLQ+ ADTVILFDSDWNPQ+D QA +R HRIGQ +EVL LR V+ D
Sbjct: 963 ISEEEQLLIVDRLHKVLRPFLLRREKIQVANEVPPKLEEILWCPLSGLQQYLYKELESNENSGPNVLMQLRKVCNHPFLFSTEIQYPSDESIVRVCGKFVMLDSILPKLRAA-GHRVLIFSQMTKLLTLLEVFLSLRNMPFLRLDGTTLSEDRQESLKLFN-AENSPYFVFLLSTKAGGFGINLQS-ADTVILFDSDWNPQNDEQAQSRAHRIGQKKEVLTLRFVTPD 1187
BLAST of EWM25311.1 vs. NCBI_GenBank
Match: gi|1129251649|gb|OLQ19296.1| (putative global transcription activator SNF2L2 [Cryptosporidium hominis]) HSP 1 Score: 171.4 bits (433), Expect = 3.312e-45 Identity = 101/228 (44.30%), Postives = 135/228 (59.21%), Query Frame = 0
Query: 11 LSKEEESLVLCQLHSVLRPFLLRRTKSQVLSHLPRKQERLLACPLSAWQRRLYRLLEDLSRAHSPAPTYLLPPSSAPRLTTS---------------------NLLNQLRKVLGRRPLIFSQFTTSLDLIEDFFIHRGMPYCRLDGRTPADARAEIIAEFNCGRRASFMAFLITTRAGGVGLNLQAGADTVILFDSDWNPQSDAQAMARCHRIGQTEEVLVLRLVSGD 217
+S+EE+ L++ +LH VLRPFLLRR K QV + +P K E +L CPLS Q+ LY+ LE + L + P L ++ ++L +LR G R LIFSQ T L L+E F R MP+ RLDG T ++ R E + FN + + FL++T+AGG G+NLQ+ ADTVILFDSDWNPQ+D QA +R HRIGQ +EVL LR V+ D
Sbjct: 964 ISEEEQLLIVDRLHKVLRPFLLRREKIQVANEVPPKLEEILWCPLSGLQQYLYKELESNENSGPNVLMQLRKVCNHPFLFSTEMQYPSDESIVRVCGKFVMLDSILPKLRAA-GHRVLIFSQMTKLLTLLEVFLSLRNMPFLRLDGTTLSEDRQESLKLFN-AENSPYFVFLLSTKAGGFGINLQS-ADTVILFDSDWNPQNDEQAQSRAHRIGQKKEVLTLRFVTPD 1188
BLAST of EWM25311.1 vs. NCBI_GenBank
Match: gi|923125442|ref|XP_013756189.1| (chromatin structure-remodeling complex subunit snf21 [Thecamonas trahens ATCC 50062] >gi|906558016|gb|KNC51259.1| chromatin structure-remodeling complex subunit snf21 [Thecamonas trahens ATCC 50062]) HSP 1 Score: 171.4 bits (433), Expect = 3.506e-45 Identity = 99/227 (43.61%), Postives = 134/227 (59.03%), Query Frame = 0
Query: 19 VLCQLHSVLRPFLLRRTKSQVLSHLPRKQERLLACPLSAWQRRLYRLLEDLSRAHSPAPTYL---------------LPPSSAPRLTTSNLL----------NQLRK--VLGRRPLIFSQFTTSLDLIEDFFIHRGMPYCRLDGRTPADARAEIIAEFNCGRRASFMAFLITTRAGGVGLNLQAGADTVILFDSDWNPQSDAQAMARCHRIGQTEEVLVLRLVSGDN 218
++ +LH VLRPFLLRR K +V LP K E +L C +S+ Q+ LY+ L + ++ P L L P + P++T N++ N LRK VLG R L+FSQ T L ++EDF I RG Y RLDG T R E++ +FN F+ FL++TRAGG+GLNLQ+ ADTVILFDSDWNP +D QA R HRIGQ +V + RL++ ++
Sbjct: 595 IINRLHKVLRPFLLRRLKKEVAKQLPDKVETVLKCDMSSVQKALYKRLSNREVVNAGGPKALNNVLMELRKVCNHPYLFPDADPKVTDLNIVRSCGKFALLDNLLRKLRVLGNRVLLFSQMTALLTVLEDFLIFRGYTYIRLDGSTRNVDRGELLRKFNAPDSPYFV-FLLSTRAGGLGLNLQS-ADTVILFDSDWNPHADLQAQDRAHRIGQKTQVRIFRLITQNS 819
BLAST of EWM25311.1 vs. NCBI_GenBank
Match: gi|961502374|emb|CUV07778.1| (unnamed protein product [Cryptosporidium hominis]) HSP 1 Score: 171.4 bits (433), Expect = 4.095e-45 Identity = 101/228 (44.30%), Postives = 135/228 (59.21%), Query Frame = 0
Query: 11 LSKEEESLVLCQLHSVLRPFLLRRTKSQVLSHLPRKQERLLACPLSAWQRRLYRLLEDLSRAHSPAPTYLLPPSSAPRLTTS---------------------NLLNQLRKVLGRRPLIFSQFTTSLDLIEDFFIHRGMPYCRLDGRTPADARAEIIAEFNCGRRASFMAFLITTRAGGVGLNLQAGADTVILFDSDWNPQSDAQAMARCHRIGQTEEVLVLRLVSGD 217
+S+EE+ L++ +LH VLRPFLLRR K QV + +P K E +L CPLS Q+ LY+ LE + L + P L ++ ++L +LR G R LIFSQ T L L+E F R MP+ RLDG T ++ R E + FN + + FL++T+AGG G+NLQ+ ADTVILFDSDWNPQ+D QA +R HRIGQ +EVL LR V+ D
Sbjct: 964 ISEEEQLLIVDRLHKVLRPFLLRREKIQVANEVPPKLEEILWCPLSGLQQYLYKELESNENSGPNVLMQLRKVCNHPFLFSTEMQYPSDESIVRVCGKFVMLDSILPKLRAA-GHRVLIFSQMTKLLTLLEVFLSLRNMPFLRLDGTTLSEDRQESLKLFN-AENSPYFVFLLSTKAGGFGINLQS-ADTVILFDSDWNPQNDEQAQSRAHRIGQKKEVLTLRFVTPD 1188
BLAST of EWM25311.1 vs. NCBI_GenBank
Match: gi|1098429060|gb|OII76962.1| (transcription regulatory protein SNF2 [Cryptosporidium andersoni]) HSP 1 Score: 168.703 bits (426), Expect = 2.801e-44 Identity = 101/230 (43.91%), Postives = 132/230 (57.39%), Query Frame = 0
Query: 11 LSKEEESLVLCQLHSVLRPFLLRRTKSQVLSHLPRKQERLLACPLSAWQRRLYRLLEDLSRAHSPAPTYLLP-----------------PSSAPRLTTSNLLNQLRKVL------GRRPLIFSQFTTSLDLIEDFFIHRGMPYCRLDGRTPADARAEIIAEFNCGRRASFMAFLITTRAGGVGLNLQAGADTVILFDSDWNPQSDAQAMARCHRIGQTEEVLVLRLVSGD 217
+S+EE+ L++ +LH VLRPFLLRR K QV + +P K E +L CPLS Q+ LY+ LE+ + P L+ PS + L +L G R LIFSQ T L L+E F R M Y RLDG T ++ R + FN + + FL++T+AGG G+NLQ+ ADTVILFDSDWNPQ+D QA +R HRIGQT+EVL LR V+ D
Sbjct: 811 ISEEEQLLIIDRLHKVLRPFLLRREKIQVANEVPPKLEEILWCPLSGLQQYLYKELEN---NENSGPNVLMQLRKVCNHPFLFSTEMQLPSDESIIRVCGKFVMLDSILPKLRAAGHRVLIFSQMTRLLSLLEIFLSLRNMTYLRLDGTTLSEDRQNSLQLFN-ATNSPYFVFLLSTKAGGFGINLQS-ADTVILFDSDWNPQNDEQAQSRAHRIGQTKEVLTLRFVTPD 1035
BLAST of EWM25311.1 vs. NCBI_GenBank
Match: gi|209877056|ref|XP_002139970.1| (transcription regulatory protein SNF2 [Cryptosporidium muris RN66] >gi|209555576|gb|EEA05621.1| transcription regulatory protein SNF2, putative [Cryptosporidium muris RN66]) HSP 1 Score: 168.703 bits (426), Expect = 3.233e-44 Identity = 101/230 (43.91%), Postives = 132/230 (57.39%), Query Frame = 0
Query: 11 LSKEEESLVLCQLHSVLRPFLLRRTKSQVLSHLPRKQERLLACPLSAWQRRLYRLLEDLSRAHSPAPTYLLP-----------------PSSAPRLTTSNLLNQLRKVL------GRRPLIFSQFTTSLDLIEDFFIHRGMPYCRLDGRTPADARAEIIAEFNCGRRASFMAFLITTRAGGVGLNLQAGADTVILFDSDWNPQSDAQAMARCHRIGQTEEVLVLRLVSGD 217
+S+EE+ L++ +LH VLRPFLLRR K QV + +P K E +L CPLS Q+ LY+ LE+ + P L+ PS + L +L G R LIFSQ T L L+E F R M Y RLDG T ++ R + FN + + FL++T+AGG G+NLQ+ ADTVILFDSDWNPQ+D QA +R HRIGQT+EVL LR V+ D
Sbjct: 810 ISEEEQLLIVDRLHKVLRPFLLRREKIQVANEVPPKLEEILWCPLSGLQQYLYKELEN---NENSGPNVLMQLRKVCNHPFLFSTEMQLPSDESIIRVCGKFVMLDSILPKLRAAGHRVLIFSQMTRLLSLLEIFLSLRNMTYLRLDGTTLSEDRQNSLQLFN-ATNSPYFVFLLSTKAGGFGINLQS-ADTVILFDSDWNPQNDEQAQSRAHRIGQTKEVLTLRFVTPD 1034
BLAST of EWM25311.1 vs. NCBI_GenBank
Match: gi|921124956|ref|XP_013437088.1| (transcription regulatory protein SNF2, putative [Eimeria necatrix] >gi|557230992|emb|CDJ68621.1| transcription regulatory protein SNF2, putative [Eimeria necatrix]) HSP 1 Score: 167.162 bits (422), Expect = 1.214e-43 Identity = 95/225 (42.22%), Postives = 135/225 (60.00%), Query Frame = 0
Query: 9 VVLSKEEESLVLCQLHSVLRPFLLRRTKSQVLSHLPRKQERLLACPLSAWQRRLYRLLEDLSRAHS---------PAPTYLLPPSSAP---------RLTTSNLLNQLRKVLGRRPLIFSQFTTSLDLIEDFFIHRGMPYCRLDGRTPADARAEIIAEFNCGRRASFMAFLITTRAGGVGLNLQAGADTVILFDSDWNPQSDAQAMARCHRIGQTEEVLVLRLVS 215
+ +++EE+ L++ +LH VLRPFLLRR K++V + LP KQE ++ CPLS QR LYR++E+ H+ P S P + ++L K R L+FSQ T LDL+E + RG Y RLDG T ++ R +A +N F+ F+++T+AGG+G+NLQ+ ADTVI+FDSDWNPQ+D QA +R HRIGQ EVL +R V+
Sbjct: 960 ITVTEEEKLLIIDRLHKVLRPFLLRREKAEVANELPSKQEEIVWCPLSGIQRILYRIIEESPMGHNRMVQLRKVCNHPFLFCFSSFTPDESLVRCCGKFAMLDVLLPALKAAQHRVLVFSQMTKLLDLLEAYLSLRGYRYLRLDGGTSSEERQTRLALYNQENSPYFL-FILSTKAGGLGVNLQS-ADTVIIFDSDWNPQNDEQAQSRAHRIGQKREVLTIRFVT 1182
BLAST of EWM25311.1 vs. NCBI_GenBank
Match: gi|916413282|ref|XP_013227872.1| (transcription regulatory protein SNF2, putative [Eimeria tenella] >gi|557137226|emb|CDJ37034.1| transcription regulatory protein SNF2, putative [Eimeria tenella]) HSP 1 Score: 166.777 bits (421), Expect = 1.286e-43 Identity = 95/225 (42.22%), Postives = 135/225 (60.00%), Query Frame = 0
Query: 9 VVLSKEEESLVLCQLHSVLRPFLLRRTKSQVLSHLPRKQERLLACPLSAWQRRLYRLLEDLSRAHS---------PAPTYLLPPSSAP---------RLTTSNLLNQLRKVLGRRPLIFSQFTTSLDLIEDFFIHRGMPYCRLDGRTPADARAEIIAEFNCGRRASFMAFLITTRAGGVGLNLQAGADTVILFDSDWNPQSDAQAMARCHRIGQTEEVLVLRLVS 215
+ +++EE+ L++ +LH VLRPFLLRR K++V + LP KQE ++ CPLS QR LYR++E+ H+ P S P + ++L K R L+FSQ T LDL+E + RG Y RLDG T ++ R +A +N F+ F+++T+AGG+G+NLQ+ ADTVI+FDSDWNPQ+D QA +R HRIGQ EVL +R V+
Sbjct: 957 ITVTEEEKLLIIDRLHKVLRPFLLRREKAEVANELPSKQEEIVWCPLSGIQRILYRIIEESPMGHNRMVQLRKVCNHPFLFCFSSFTPDESLVRCCGKFAMLDVLLPALKAAQHRVLVFSQMTKLLDLLEAYLSLRGYRYLRLDGGTSSEERQTRLALYNQENSPYFL-FILSTKAGGLGVNLQS-ADTVIIFDSDWNPQNDEQAQSRAHRIGQKREVLTIRFVT 1179 The following BLAST results are available for this feature:
BLAST of EWM25311.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|