EWM25311.1, cds5357 (CDS) Nannochloropsis gaditana

Overview
NameEWM25311.1
Unique Namecds5357
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:824184..824483 -
Alignment locationCM002465.1:823680..824024 -
Alignment locationCM002465.1:822869..822934 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25311.1
Producttranscription regulatory protein
Orig transcript idgnl|cribi|Naga_100135g16.5868.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:824184..824483 -
CM002465.1supercontigCM002465.1:823680..824024 -
CM002465.1supercontigCM002465.1:822869..822934 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
GO:0005524ATP binding
Vocabulary: INTERPRO
TermDefinition
IPR000330SNF2_N
IPR027417P-loop_NTPase
IPR001650Helicase_C
Homology
BLAST of EWM25311.1 vs. NCBI_GenBank
Match: gi|585107066|gb|EWM25311.1| (transcription regulatory protein [Nannochloropsis gaditana])

HSP 1 Score: 480.33 bits (1235), Expect = 1.485e-171
Identity = 236/236 (100.00%), Postives = 236/236 (100.00%), Query Frame = 0
Query:    1 MREKELRQVVLSKEEESLVLCQLHSVLRPFLLRRTKSQVLSHLPRKQERLLACPLSAWQRRLYRLLEDLSRAHSPAPTYLLPPSSAPRLTTSNLLNQLRKVLGRRPLIFSQFTTSLDLIEDFFIHRGMPYCRLDGRTPADARAEIIAEFNCGRRASFMAFLITTRAGGVGLNLQAGADTVILFDSDWNPQSDAQAMARCHRIGQTEEVLVLRLVSGDNKCGRQLQDVRPLMRIKAD 236
            MREKELRQVVLSKEEESLVLCQLHSVLRPFLLRRTKSQVLSHLPRKQERLLACPLSAWQRRLYRLLEDLSRAHSPAPTYLLPPSSAPRLTTSNLLNQLRKVLGRRPLIFSQFTTSLDLIEDFFIHRGMPYCRLDGRTPADARAEIIAEFNCGRRASFMAFLITTRAGGVGLNLQAGADTVILFDSDWNPQSDAQAMARCHRIGQTEEVLVLRLVSGDNKCGRQLQDVRPLMRIKAD
Sbjct:    1 MREKELRQVVLSKEEESLVLCQLHSVLRPFLLRRTKSQVLSHLPRKQERLLACPLSAWQRRLYRLLEDLSRAHSPAPTYLLPPSSAPRLTTSNLLNQLRKVLGRRPLIFSQFTTSLDLIEDFFIHRGMPYCRLDGRTPADARAEIIAEFNCGRRASFMAFLITTRAGGVGLNLQAGADTVILFDSDWNPQSDAQAMARCHRIGQTEEVLVLRLVSGDNKCGRQLQDVRPLMRIKAD 236          
BLAST of EWM25311.1 vs. NCBI_GenBank
Match: gi|1098425533|gb|OII73658.1| (hypothetical protein cubi_03456 [Cryptosporidium ubiquitum])

HSP 1 Score: 171.785 bits (434), Expect = 2.481e-45
Identity = 101/228 (44.30%), Postives = 136/228 (59.65%), Query Frame = 0
Query:   11 LSKEEESLVLCQLHSVLRPFLLRRTKSQVLSHLPRKQERLLACPLSAWQRRLYRLLEDLSRAHSPAPTYLLPPSSAPRLTTS---------------------NLLNQLRKVLGRRPLIFSQFTTSLDLIEDFFIHRGMPYCRLDGRTPADARAEIIAEFNCGRRASFMAFLITTRAGGVGLNLQAGADTVILFDSDWNPQSDAQAMARCHRIGQTEEVLVLRLVSGD 217
            +S+EE+ L++ +LH VLRPFLLRR K QV + +P K E +L CPLS  Q+ LY+ LE+   +       L    + P L ++                     ++L +LR   G R LIFSQ T  L L+E F   R MP+ RLDG T ++ R E +  FN    + +  FL++T+AGG G+NLQ+ ADTVILFDSDWNPQ+D QA +R HRIGQ +EVL LR V+ D
Sbjct:  975 ISEEEQLLIVDRLHKVLRPFLLRREKIQVANEVPPKLEEILWCPLSGLQQYLYKELENNENSGPNVLMQLRKVCNHPFLFSTEIQYPSDESIVRVCGKFVMLDSILPKLRAA-GHRVLIFSQMTKLLTLLEVFLSLRNMPFLRLDGTTLSEDRQESLKLFN-AENSPYFVFLLSTKAGGFGINLQS-ADTVILFDSDWNPQNDEQAQSRAHRIGQKKEVLTLRFVTPD 1199          
BLAST of EWM25311.1 vs. NCBI_GenBank
Match: gi|66359910|ref|XP_627133.1| (brahma like protein with a HSA domain, SNF2 like helicase and a bromo domain [Cryptosporidium parvum Iowa II] >gi|46228555|gb|EAK89425.1| brahma like protein with a HSA domain, SNF2 like helicase and a bromo domain [Cryptosporidium parvum Iowa II])

HSP 1 Score: 171.4 bits (433), Expect = 3.096e-45
Identity = 101/228 (44.30%), Postives = 135/228 (59.21%), Query Frame = 0
Query:   11 LSKEEESLVLCQLHSVLRPFLLRRTKSQVLSHLPRKQERLLACPLSAWQRRLYRLLEDLSRAHSPAPTYLLPPSSAPRLTTS---------------------NLLNQLRKVLGRRPLIFSQFTTSLDLIEDFFIHRGMPYCRLDGRTPADARAEIIAEFNCGRRASFMAFLITTRAGGVGLNLQAGADTVILFDSDWNPQSDAQAMARCHRIGQTEEVLVLRLVSGD 217
            +S+EE+ L++ +LH VLRPFLLRR K QV + +P K E +L CPLS  Q+ LY+ LE    +       L    + P L ++                     ++L +LR   G R LIFSQ T  L L+E F   R MP+ RLDG T ++ R E +  FN    + +  FL++T+AGG G+NLQ+ ADTVILFDSDWNPQ+D QA +R HRIGQ +EVL LR V+ D
Sbjct:  963 ISEEEQLLIVDRLHKVLRPFLLRREKIQVANEVPPKLEEILWCPLSGLQQYLYKELESNENSGPNVLMQLRKVCNHPFLFSTEIQYPSDESIVRVCGKFVMLDSILPKLRAA-GHRVLIFSQMTKLLTLLEVFLSLRNMPFLRLDGTTLSEDRQESLKLFN-AENSPYFVFLLSTKAGGFGINLQS-ADTVILFDSDWNPQNDEQAQSRAHRIGQKKEVLTLRFVTPD 1187          
BLAST of EWM25311.1 vs. NCBI_GenBank
Match: gi|1129251649|gb|OLQ19296.1| (putative global transcription activator SNF2L2 [Cryptosporidium hominis])

HSP 1 Score: 171.4 bits (433), Expect = 3.312e-45
Identity = 101/228 (44.30%), Postives = 135/228 (59.21%), Query Frame = 0
Query:   11 LSKEEESLVLCQLHSVLRPFLLRRTKSQVLSHLPRKQERLLACPLSAWQRRLYRLLEDLSRAHSPAPTYLLPPSSAPRLTTS---------------------NLLNQLRKVLGRRPLIFSQFTTSLDLIEDFFIHRGMPYCRLDGRTPADARAEIIAEFNCGRRASFMAFLITTRAGGVGLNLQAGADTVILFDSDWNPQSDAQAMARCHRIGQTEEVLVLRLVSGD 217
            +S+EE+ L++ +LH VLRPFLLRR K QV + +P K E +L CPLS  Q+ LY+ LE    +       L    + P L ++                     ++L +LR   G R LIFSQ T  L L+E F   R MP+ RLDG T ++ R E +  FN    + +  FL++T+AGG G+NLQ+ ADTVILFDSDWNPQ+D QA +R HRIGQ +EVL LR V+ D
Sbjct:  964 ISEEEQLLIVDRLHKVLRPFLLRREKIQVANEVPPKLEEILWCPLSGLQQYLYKELESNENSGPNVLMQLRKVCNHPFLFSTEMQYPSDESIVRVCGKFVMLDSILPKLRAA-GHRVLIFSQMTKLLTLLEVFLSLRNMPFLRLDGTTLSEDRQESLKLFN-AENSPYFVFLLSTKAGGFGINLQS-ADTVILFDSDWNPQNDEQAQSRAHRIGQKKEVLTLRFVTPD 1188          
BLAST of EWM25311.1 vs. NCBI_GenBank
Match: gi|923125442|ref|XP_013756189.1| (chromatin structure-remodeling complex subunit snf21 [Thecamonas trahens ATCC 50062] >gi|906558016|gb|KNC51259.1| chromatin structure-remodeling complex subunit snf21 [Thecamonas trahens ATCC 50062])

HSP 1 Score: 171.4 bits (433), Expect = 3.506e-45
Identity = 99/227 (43.61%), Postives = 134/227 (59.03%), Query Frame = 0
Query:   19 VLCQLHSVLRPFLLRRTKSQVLSHLPRKQERLLACPLSAWQRRLYRLLEDLSRAHSPAPTYL---------------LPPSSAPRLTTSNLL----------NQLRK--VLGRRPLIFSQFTTSLDLIEDFFIHRGMPYCRLDGRTPADARAEIIAEFNCGRRASFMAFLITTRAGGVGLNLQAGADTVILFDSDWNPQSDAQAMARCHRIGQTEEVLVLRLVSGDN 218
            ++ +LH VLRPFLLRR K +V   LP K E +L C +S+ Q+ LY+ L +    ++  P  L               L P + P++T  N++          N LRK  VLG R L+FSQ T  L ++EDF I RG  Y RLDG T    R E++ +FN      F+ FL++TRAGG+GLNLQ+ ADTVILFDSDWNP +D QA  R HRIGQ  +V + RL++ ++
Sbjct:  595 IINRLHKVLRPFLLRRLKKEVAKQLPDKVETVLKCDMSSVQKALYKRLSNREVVNAGGPKALNNVLMELRKVCNHPYLFPDADPKVTDLNIVRSCGKFALLDNLLRKLRVLGNRVLLFSQMTALLTVLEDFLIFRGYTYIRLDGSTRNVDRGELLRKFNAPDSPYFV-FLLSTRAGGLGLNLQS-ADTVILFDSDWNPHADLQAQDRAHRIGQKTQVRIFRLITQNS 819          
BLAST of EWM25311.1 vs. NCBI_GenBank
Match: gi|961502374|emb|CUV07778.1| (unnamed protein product [Cryptosporidium hominis])

HSP 1 Score: 171.4 bits (433), Expect = 4.095e-45
Identity = 101/228 (44.30%), Postives = 135/228 (59.21%), Query Frame = 0
Query:   11 LSKEEESLVLCQLHSVLRPFLLRRTKSQVLSHLPRKQERLLACPLSAWQRRLYRLLEDLSRAHSPAPTYLLPPSSAPRLTTS---------------------NLLNQLRKVLGRRPLIFSQFTTSLDLIEDFFIHRGMPYCRLDGRTPADARAEIIAEFNCGRRASFMAFLITTRAGGVGLNLQAGADTVILFDSDWNPQSDAQAMARCHRIGQTEEVLVLRLVSGD 217
            +S+EE+ L++ +LH VLRPFLLRR K QV + +P K E +L CPLS  Q+ LY+ LE    +       L    + P L ++                     ++L +LR   G R LIFSQ T  L L+E F   R MP+ RLDG T ++ R E +  FN    + +  FL++T+AGG G+NLQ+ ADTVILFDSDWNPQ+D QA +R HRIGQ +EVL LR V+ D
Sbjct:  964 ISEEEQLLIVDRLHKVLRPFLLRREKIQVANEVPPKLEEILWCPLSGLQQYLYKELESNENSGPNVLMQLRKVCNHPFLFSTEMQYPSDESIVRVCGKFVMLDSILPKLRAA-GHRVLIFSQMTKLLTLLEVFLSLRNMPFLRLDGTTLSEDRQESLKLFN-AENSPYFVFLLSTKAGGFGINLQS-ADTVILFDSDWNPQNDEQAQSRAHRIGQKKEVLTLRFVTPD 1188          
BLAST of EWM25311.1 vs. NCBI_GenBank
Match: gi|1098429060|gb|OII76962.1| (transcription regulatory protein SNF2 [Cryptosporidium andersoni])

HSP 1 Score: 168.703 bits (426), Expect = 2.801e-44
Identity = 101/230 (43.91%), Postives = 132/230 (57.39%), Query Frame = 0
Query:   11 LSKEEESLVLCQLHSVLRPFLLRRTKSQVLSHLPRKQERLLACPLSAWQRRLYRLLEDLSRAHSPAPTYLLP-----------------PSSAPRLTTSNLLNQLRKVL------GRRPLIFSQFTTSLDLIEDFFIHRGMPYCRLDGRTPADARAEIIAEFNCGRRASFMAFLITTRAGGVGLNLQAGADTVILFDSDWNPQSDAQAMARCHRIGQTEEVLVLRLVSGD 217
            +S+EE+ L++ +LH VLRPFLLRR K QV + +P K E +L CPLS  Q+ LY+ LE+     +  P  L+                  PS    +        L  +L      G R LIFSQ T  L L+E F   R M Y RLDG T ++ R   +  FN    + +  FL++T+AGG G+NLQ+ ADTVILFDSDWNPQ+D QA +R HRIGQT+EVL LR V+ D
Sbjct:  811 ISEEEQLLIIDRLHKVLRPFLLRREKIQVANEVPPKLEEILWCPLSGLQQYLYKELEN---NENSGPNVLMQLRKVCNHPFLFSTEMQLPSDESIIRVCGKFVMLDSILPKLRAAGHRVLIFSQMTRLLSLLEIFLSLRNMTYLRLDGTTLSEDRQNSLQLFN-ATNSPYFVFLLSTKAGGFGINLQS-ADTVILFDSDWNPQNDEQAQSRAHRIGQTKEVLTLRFVTPD 1035          
BLAST of EWM25311.1 vs. NCBI_GenBank
Match: gi|209877056|ref|XP_002139970.1| (transcription regulatory protein SNF2 [Cryptosporidium muris RN66] >gi|209555576|gb|EEA05621.1| transcription regulatory protein SNF2, putative [Cryptosporidium muris RN66])

HSP 1 Score: 168.703 bits (426), Expect = 3.233e-44
Identity = 101/230 (43.91%), Postives = 132/230 (57.39%), Query Frame = 0
Query:   11 LSKEEESLVLCQLHSVLRPFLLRRTKSQVLSHLPRKQERLLACPLSAWQRRLYRLLEDLSRAHSPAPTYLLP-----------------PSSAPRLTTSNLLNQLRKVL------GRRPLIFSQFTTSLDLIEDFFIHRGMPYCRLDGRTPADARAEIIAEFNCGRRASFMAFLITTRAGGVGLNLQAGADTVILFDSDWNPQSDAQAMARCHRIGQTEEVLVLRLVSGD 217
            +S+EE+ L++ +LH VLRPFLLRR K QV + +P K E +L CPLS  Q+ LY+ LE+     +  P  L+                  PS    +        L  +L      G R LIFSQ T  L L+E F   R M Y RLDG T ++ R   +  FN    + +  FL++T+AGG G+NLQ+ ADTVILFDSDWNPQ+D QA +R HRIGQT+EVL LR V+ D
Sbjct:  810 ISEEEQLLIVDRLHKVLRPFLLRREKIQVANEVPPKLEEILWCPLSGLQQYLYKELEN---NENSGPNVLMQLRKVCNHPFLFSTEMQLPSDESIIRVCGKFVMLDSILPKLRAAGHRVLIFSQMTRLLSLLEIFLSLRNMTYLRLDGTTLSEDRQNSLQLFN-ATNSPYFVFLLSTKAGGFGINLQS-ADTVILFDSDWNPQNDEQAQSRAHRIGQTKEVLTLRFVTPD 1034          
BLAST of EWM25311.1 vs. NCBI_GenBank
Match: gi|921124956|ref|XP_013437088.1| (transcription regulatory protein SNF2, putative [Eimeria necatrix] >gi|557230992|emb|CDJ68621.1| transcription regulatory protein SNF2, putative [Eimeria necatrix])

HSP 1 Score: 167.162 bits (422), Expect = 1.214e-43
Identity = 95/225 (42.22%), Postives = 135/225 (60.00%), Query Frame = 0
Query:    9 VVLSKEEESLVLCQLHSVLRPFLLRRTKSQVLSHLPRKQERLLACPLSAWQRRLYRLLEDLSRAHS---------PAPTYLLPPSSAP---------RLTTSNLLNQLRKVLGRRPLIFSQFTTSLDLIEDFFIHRGMPYCRLDGRTPADARAEIIAEFNCGRRASFMAFLITTRAGGVGLNLQAGADTVILFDSDWNPQSDAQAMARCHRIGQTEEVLVLRLVS 215
            + +++EE+ L++ +LH VLRPFLLRR K++V + LP KQE ++ CPLS  QR LYR++E+    H+           P      S  P         +    ++L    K    R L+FSQ T  LDL+E +   RG  Y RLDG T ++ R   +A +N      F+ F+++T+AGG+G+NLQ+ ADTVI+FDSDWNPQ+D QA +R HRIGQ  EVL +R V+
Sbjct:  960 ITVTEEEKLLIIDRLHKVLRPFLLRREKAEVANELPSKQEEIVWCPLSGIQRILYRIIEESPMGHNRMVQLRKVCNHPFLFCFSSFTPDESLVRCCGKFAMLDVLLPALKAAQHRVLVFSQMTKLLDLLEAYLSLRGYRYLRLDGGTSSEERQTRLALYNQENSPYFL-FILSTKAGGLGVNLQS-ADTVIIFDSDWNPQNDEQAQSRAHRIGQKREVLTIRFVT 1182          
BLAST of EWM25311.1 vs. NCBI_GenBank
Match: gi|916413282|ref|XP_013227872.1| (transcription regulatory protein SNF2, putative [Eimeria tenella] >gi|557137226|emb|CDJ37034.1| transcription regulatory protein SNF2, putative [Eimeria tenella])

HSP 1 Score: 166.777 bits (421), Expect = 1.286e-43
Identity = 95/225 (42.22%), Postives = 135/225 (60.00%), Query Frame = 0
Query:    9 VVLSKEEESLVLCQLHSVLRPFLLRRTKSQVLSHLPRKQERLLACPLSAWQRRLYRLLEDLSRAHS---------PAPTYLLPPSSAP---------RLTTSNLLNQLRKVLGRRPLIFSQFTTSLDLIEDFFIHRGMPYCRLDGRTPADARAEIIAEFNCGRRASFMAFLITTRAGGVGLNLQAGADTVILFDSDWNPQSDAQAMARCHRIGQTEEVLVLRLVS 215
            + +++EE+ L++ +LH VLRPFLLRR K++V + LP KQE ++ CPLS  QR LYR++E+    H+           P      S  P         +    ++L    K    R L+FSQ T  LDL+E +   RG  Y RLDG T ++ R   +A +N      F+ F+++T+AGG+G+NLQ+ ADTVI+FDSDWNPQ+D QA +R HRIGQ  EVL +R V+
Sbjct:  957 ITVTEEEKLLIIDRLHKVLRPFLLRREKAEVANELPSKQEEIVWCPLSGIQRILYRIIEESPMGHNRMVQLRKVCNHPFLFCFSSFTPDESLVRCCGKFAMLDVLLPALKAAQHRVLVFSQMTKLLDLLEAYLSLRGYRYLRLDGGTSSEERQTRLALYNQENSPYFL-FILSTKAGGLGVNLQS-ADTVIIFDSDWNPQNDEQAQSRAHRIGQKREVLTIRFVT 1179          
The following BLAST results are available for this feature:
BLAST of EWM25311.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107066|gb|EWM25311.1|1.485e-171100.00transcription regulatory protein [Nannochloropsis ... [more]
gi|1098425533|gb|OII73658.1|2.481e-4544.30hypothetical protein cubi_03456 [Cryptosporidium u... [more]
gi|66359910|ref|XP_627133.1|3.096e-4544.30brahma like protein with a HSA domain, SNF2 like h... [more]
gi|1129251649|gb|OLQ19296.1|3.312e-4544.30putative global transcription activator SNF2L2 [Cr... [more]
gi|923125442|ref|XP_013756189.1|3.506e-4543.61chromatin structure-remodeling complex subunit snf... [more]
gi|961502374|emb|CUV07778.1|4.095e-4544.30unnamed protein product [Cryptosporidium hominis][more]
gi|1098429060|gb|OII76962.1|2.801e-4443.91transcription regulatory protein SNF2 [Cryptospori... [more]
gi|209877056|ref|XP_002139970.1|3.233e-4443.91transcription regulatory protein SNF2 [Cryptospori... [more]
gi|921124956|ref|XP_013437088.1|1.214e-4342.22transcription regulatory protein SNF2, putative [E... [more]
gi|916413282|ref|XP_013227872.1|1.286e-4342.22transcription regulatory protein SNF2, putative [E... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5370rna5370Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications