rna5368, rna5368 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5368
Unique Name	rna5368
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1483
Alignment location	CM002465.1:819851..821553 -

Link to JBrowse

Properties


Property Name	Value
Product	zinc fyve domain containing 21
Orig transcript id	gnl\|cribi\|Naga_100281g2.5086.mrna
Orig protein id	gnl\|cribi\|Naga_100281g2.5086
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002465.1	supercontig	CM002465.1:819851..821553 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100281g2	gene5189	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5368	rna5368-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25320.1	cds5355	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002465.1:819851..821553-
coding sequence from alignment at CM002465.1:819851..821553-

mRNA sequence

>rna5368 ID=rna5368|Name=rna5368|organism=Nannochloropsis gaditana|type=mRNA|length=1483bp
AGCTGCAGGCACTTGTCAGGCCACTTTATGAGCTGAAACACGACGCCCGC
GGGAAGAAGTTGACGTACGAAAGTCTTAAGTGTCTTATTCGTGCCCTTTT
GTTATTTGTGCCCTCTTAGGCAAATAAAAACGCATCATGAGTCGCCCAGC
ATCCTTTCTGAGGCCCGTGGCTTTGCTCTTGGGGGTCCTCGTCCTCTTCC
TTGTCTCTTCCTCTGCGGACGCCCTTTTCAGTAAACTGGCCAAAAAAAAG
AAGCAACAGGAGCAACAACATGAAGAAAAAGCGTTTACAGGCACTGAAAG
CGCGAATATGGGACTTGAAGCCTTCCAAGACCTTTTTGCCAATCCCAGCG
GCATGCAGGAGCTCATGAACATGCAAAAAGATCCAGAGATCATGCGTGAG
GTAGAGGCGCTATTGGAGGACCCAGAATTCCAAGCTTACATGGCCGAATA
CATGAACAGCGACGCTGTCAAGGAGTCGTTAAAAATGGCGGAAAAGCTGG
CCAATGACCCCAAGGCCCTGGAGGCCTTCCAATCCAAAATGCTGGCGGCC
ATGCAAGGCAATGCGGAGGATGGCACGGAGTCGGCACGCACGGGACTGGA
GACCCTGGCCGCCTCGGTCCAAGACCCCTCAGGACTCATGCAGGCCATGG
ACATGCTCAAGGACCCGGCGGTCGTCAAGGAGGTGGAGTCCCTGATGGCG
GATCCGGACTTCCAGCGCGAGATGAAGAAGATGGCAGAATCTCCGATGTT
TGCGGAGGCCATGCAACAGGCCCAAGCCTTGACCGAGGAGCTGCAGAAGG
ACCCTGCGAAACTGGAGGCCTTCATGAAGGACCTCGAGAGTGAGATGGCC
AAGATGGGGGGCGCGGCGGGGCTCCCCATGGGCAAGGCAGGGGCGGGGCG
GGGCCGGGTGGAGCTGTAGAGGAGAAGATTGACGACGGCAAGAGGGCGGG
GGAGAGGGACAGGGGGGATAGCTGGCAGACACAGGCGAGCCAGGTGATGA
GCTCACCTGCGGGGGACGCCTGGGGCGCGAAGGGGGAATGTTGGGCGCGA
GGAAAGCTCGACAGAGAATCTGGCTGTGAGAAACCGTTAAGGGCATGGAG
GAGAAGGGGTGGAGAGGGGTCAATGGGAAAGTTAGTTGTCCGGCTTGCAT
GCGTGTGGCCATGGGAAGAGAAGGACACGGGCTGGACAGATGGCTTTGCG
GCTTGAGAGAAAGAAGAAACTCAGAGCAAACGGCAGGCCACAGGAAGGCA
GAAAGACATCGGATGTTCAAGGGAAGGGGAAGTACGGTGGTGATGATTAT
TGAGTGGAAAGAGAGTAGCGCGGGATCGACGTTACTAGGGCAAAGTAGAG
GCAAAGGGGAAGGCAGAGAAGTGGAGAATTAAATGGGCCGCCACCAGCCT
CCCGAAACAGGGGGAGAAGCACTCAAGGAGCGTCTCGCGAGCCCATTTCT
CAAACACAAATACGGTTGCAGTCTAACTTTAGC

protein sequence of rna5368

>rna5368-protein ID=rna5368-protein|Name=rna5368|organism=Nannochloropsis gaditana|type=polypeptide|length=388bp
MNSSFSFECQKASPYWGFDGAVMHDTYSILTSLLHLPGIEQARSRSVPYF
VVFSLPSNVWRSMISLTNCFSRICPCLNFRDWERRGYETISSGTYLSSVP
VSTNDTVVPLQRIKKGGGAALTTSSSDLAAVPVHPAIALPRYVMDEEVER
CFACAVPFDFAQRRHHCRRCRNIFCAACTSRERPILLYMLSDPVRVCLRC
GNEVGKENEFVDRHLKGLTEGLEVTVTRGVSAVLGRRQPVSLILSADLKT
LQVVDLPSLPAYHDASRPHSSHDCPRVLMHFPLVDIGGVSEVGSLSFLIL
TSTGVRRKFETSGPGQRQAWVAAIREAARLLPSMAGLRKRIEEERIQRAT
QERMAMAERQEKDALLAKKREKAAVRHAIADKYGLARR

mRNA from alignment at CM002465.1:819851..821553-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5368 ID=rna5368|Name=rna5368|organism=Nannochloropsis gaditana|type=mRNA|length=1703bp|location=Sequence derived from alignment at CM002465.1:819851..821553- (Nannochloropsis gaditana)
TCTATGCAGCTTCGTAAACCAATAAGGACCCAGCAAAAGTCACTGTGGCT
CTCCTCAGGACGGTATTGTCTGGAATGAATAGCTCATTTTCATTTGAGTG
CCAGAAGGCTAGTCCATACTGGGGATTTGATGGAGCAGTAATGCACGATA
CTTACTCCATTCTGACCTCCCTGCTTCACTTGCCAGGCATCGAACAGGCC
CGGAGCCGTAGCGTACCCTACTTTGTGGTCTTCTCGCTTCCCAGCAACGT
ATGGAGGAGCATGATTTCTTTGACAAACTGCTTCAGTCGAATTTGCCCGT
GCCTGAATTTTCGAGACTGGGAACGCCGTGGGTACGAGACGATATCCAGC
GGTACTTATTTATCTTCAGTACCTGTATCGACAAATGACACTGTGGTCCC
GCTTCAAAGAATTAAAAAAGGTGGTGGCGCGGCTCTCACTACGTCAAGCT
CTGACTTGGCGGCCGTACCAGTGCATCCTGCTATTGCGTTGCCAAGATAT
GTCATGGACGAGGAGGTGGAGGTACGTGCTGGTGTCTTATGGCACAATTC
TCGATTTTTCATGCTTCATCAGCTCATCTCGATGGTTCAATCTATGATCC
ATGTAGTGCGGTACAATTTTTTTGGGGTACTTCTCTTAGTTTTATGTTTC
CGACAATCCTCACGTTGTCGTCATCATTGCCTTTCTCCTAGCGGTGCTTC
GCATGCGCGGTTCCCTTTGATTTCGCGCAGAGACGTCATCACTGTCGGCG
TTGCCGCAACATTTTCTGTGCGGCTTGTACGTCCCGAGAGCGCCCCATCC
TGCTCTACATGCTGTCCGATCCTGTCCGCGTATGTCTTCGCTGCGGAAAC
GAAGTAGGAAAGGAGAATGAATTTGTGGACCGGCATTTAAAGGGCTTGAC
GGAAGGGTTGGAAGTGACGGTGACACGGGGTGTCAGCGCCGTGCTTGGCC
GACGACAGCCAGTCTCCCTCATTCTCTCTGCGGATCTGAAGACACTCCAA
GTCGTCGATCTTCCTTCGCTTCCCGCCTACCACGACGCCTCCCGCCCTCA
TTCTTCGCACGACTGCCCACGCGTCCTTATGCACTTCCCTCTGGTGGACA
TTGGTGGGGTCTCGGAGGTTGGCTCCCTCTCCTTCCTAATCCTAACTAGC
ACGGGCGTTCGACGCAAATTTGAAACGAGCGGACCGGGGCAACGGCAGGC
ATGGGTGGCGGCGATACGGGAAGCGGCGCGGCTTCTCCCTTCGATGGCAG
GGTTGCGGAAGAGAATCGAGGAGGAACGGATCCAACGTGCGACGCAAGAG
AGGATGGCGATGGCGGAGCGACAGGAAAAGGATGCGTTGCTAGCGAAGAA
AAGGGAGAAGGCGGCCGTCCGGCATGCCATCGCAGACAAGTACGGTCTGG
CGAGAAGATGAATCACAGGCTTCCAAGTCTCCCGTGTGCCGAGGGATCTG
GACAGAAAAAAAGCAACTTGTGGGCTGCTACAGCGGTGTAAAGTGAAGGG
TAGATGTGAGACAAATGGGGACCGTATGTGCAGCCGTGTAATGATGGATG
GGGTGACAGAGTGAGGACGTGGGGGGGTCGGGGGGCAGGGAAGGGCGCGG
CAAACGAGGTGGGATTAGATGCTTGTCGTGTCCCCAAAGTATGTACAAAC
GACCGAACCTTAAAGAAAGTGCTAAAGTTAGACTGCAACCGTATTTGTGT
TTG

Coding sequence (CDS) from alignment at CM002465.1:819851..821553-

>rna5368 ID=rna5368|Name=rna5368|organism=Nannochloropsis gaditana|type=CDS|length=2334bp|location=Sequence derived from alignment at CM002465.1:819851..821553- (Nannochloropsis gaditana)
CGGTGCTTCGCATGCGCGGTTCCCTTTGATTTCGCGCAGAGACGTCATCA
CTGTCGGCGTTGCCGCAACATTTTCTGTGCGGCTTGTACGTCCCGAGAGC
GCCCCATCCTGCTCTACATGCTGTCCGATCCTGTCCGCGTATGTCTTCGC
TGCGGAAACGAAGTAGGAAAGGAGAATGAATTTGTGGACCGGCATTTAAA
GGGCTTGACGGAAGGGTTGGAAGTGACGGTGACACGGGGTGTCAGCGCCG
TGCTTGGCCGACGACAGCCAGTCTCCCTCATTCTCTCTGCGGATCTGAAG
ACACTCCAAGTCGTCGATCTTCCTTCGCTTCCCGCCTACCACGACGCCTC
CCGCCCTCATTCTTCGCACGACTGCCCACGCGTCCTTATGCACTTCCCTC
TGGTGGACATTGGTGGGGTCTCGGAGGTTGGCTCCCTCTCCTTCCTAATC
CTAACTAGCACGGGCGTTCGACGCAAATTTGAAACGAGCGGACCGGGGCA
ACGGCAGGCATGGGTGGCGGCGATACGGGAAGCGGCGCGGCTTCTCCCTT
CGATGGCAGGGTTGCGGAAGAGAATCGAGGAGGAACGGATCCAACGTGCG
ACGCAAGAGAGGATGGCGATGGCGGAGCGACAGGAAAAGGATGCGTTGCT
AGCGAAGAAAAGGGAGAAGGCGGCCGTCCGGCATGCCATCGCAGACAAGT
ACGGTCTGGCGAGAAGATGAATGAATAGCTCATTTTCATTTGAGTGCCAG
AAGGCTAGTCCATACTGGGGATTTGATGGAGCAGTAATGCACGATACTTA
CTCCATTCTGACCTCCCTGCTTCACTTGCCAGGCATCGAACAGGCCCGGA
GCCGTAGCGTACCCTACTTTGTGGTCTTCTCGCTTCCCAGCAACGTATGG
AGGAGCATGATTTCTTTGACAAACTGCTTCAGTCGAATTTGCCCGTGCCT
GAATTTTCGAGACTGGGAACGCCGTGGGTACGAGACGATATCCAGCGGTA
CTTATTTATCTTCAGTACCTGTATCGACAAATGACACTGTGGTCCCGCTT
CAAAGAATTAAAAAAGGTGGTGGCGCGGCTCTCACTACGTCAAGCTCTGA
CTTGGCGGCCGTACCAGTGCATCCTGCTATTGCGTTGCCAAGATATGTCA
TGGACGAGGAGGTGGAGCGGTGCTTCGCATGCGCGGTTCCCTTTGATTTC
GCGCAGAGACGTCATCACTGTCGGCGTTGCCGCAACATTTTCTGTGCGGC
TTGTACGTCCCGAGAGCGCCCCATCCTGCTCTACATGCTGTCCGATCCTG
TCCGCGTATGTCTTCGCTGCGGAAACGAAGTAGGAAAGGAGAATGAATTT
GTGGACCGGCATTTAAAGGGCTTGACGGAAGGGTTGGAAGTGACGGTGAC
ACGGGGTGTCAGCGCCGTGCTTGGCCGACGACAGCCAGTCTCCCTCATTC
TCTCTGCGGATCTGAAGACACTCCAAGTCGTCGATCTTCCTTCGCTTCCC
GCCTACCACGACGCCTCCCGCCCTCATTCTTCGCACGACTGCCCACGCGT
CCTTATGCACTTCCCTCTGGTGGACATTGGTGGGGTCTCGGAGGTTGGCT
CCCTCTCCTTCCTAATCCTAACTAGCACGGGCGTTCGACGCAAATTTGAA
ACGAGCGGACCGGGGCAACGGCAGGCATGGGTGGCGGCGATACGGGAAGC
GGCGCGGCTTCTCCCTTCGATGGCAGGGTTGCGGAAGAGAATCGAGGAGG
AACGGATCCAACGTGCGACGCAAGAGAGGATGGCGATGGCGGAGCGACAG
GAAAAGGATGCGTTGCTAGCGAAGAAAAGGGAGAAGGCGGCCGTCCGGCA
TGCCATCGCAGACAAGTACGGTCTGGCGAGAAGATGAATGAATAGCTCAT
TTTCATTTGAGTGCCAGAAGGCTAGTCCATACTGGGGATTTGATGGAGCA
GTAATGCACGATACTTACTCCATTCTGACCTCCCTGCTTCACTTGCCAGG
CATCGAACAGGCCCGGAGCCGTAGCGTACCCTACTTTGTGGTCTTCTCGC
TTCCCAGCAACGTATGGAGGAGCATGATTTCTTTGACAAACTGCTTCAGT
CGAATTTGCCCGTGCCTGAATTTTCGAGACTGGGAACGCCGTGGGTACGA
GACGATATCCAGCGGTACTTATTTATCTTCAGTACCTGTATCGACAAATG
ACACTGTGGTCCCGCTTCAAAGAATTAAAAAAGGTGGTGGCGCGGCTCTC
ACTACGTCAAGCTCTGACTTGGCGGCCGTACCAGTGCATCCTGCTATTGC
GTTGCCAAGATATGTCATGGACGAGGAGGTGGAG

Synonyms

Publications