EWM25320.1, cds5355 (CDS) Nannochloropsis gaditana

Overview
NameEWM25320.1
Unique Namecds5355
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:821033..821479 -
Alignment locationCM002465.1:820143..820862 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25320.1
Productzinc fyve domain containing 21
Orig transcript idgnl|cribi|Naga_100281g2.5086.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:821033..821479 -
CM002465.1supercontigCM002465.1:820143..820862 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0046872metal ion binding
Vocabulary: INTERPRO
TermDefinition
IPR011011Znf_FYVE_PHD
IPR017455Znf_FYVE-rel
IPR030564Myotubularin_fam
IPR013083Znf_RING/FYVE/PHD
IPR000306Znf_FYVE
Homology
BLAST of EWM25320.1 vs. NCBI_GenBank
Match: gi|585107076|gb|EWM25320.1| (zinc fyve domain containing 21 [Nannochloropsis gaditana])

HSP 1 Score: 800.045 bits (2065), Expect = 0.000e+0
Identity = 388/388 (100.00%), Postives = 388/388 (100.00%), Query Frame = 0
Query:    1 MNSSFSFECQKASPYWGFDGAVMHDTYSILTSLLHLPGIEQARSRSVPYFVVFSLPSNVWRSMISLTNCFSRICPCLNFRDWERRGYETISSGTYLSSVPVSTNDTVVPLQRIKKGGGAALTTSSSDLAAVPVHPAIALPRYVMDEEVERCFACAVPFDFAQRRHHCRRCRNIFCAACTSRERPILLYMLSDPVRVCLRCGNEVGKENEFVDRHLKGLTEGLEVTVTRGVSAVLGRRQPVSLILSADLKTLQVVDLPSLPAYHDASRPHSSHDCPRVLMHFPLVDIGGVSEVGSLSFLILTSTGVRRKFETSGPGQRQAWVAAIREAARLLPSMAGLRKRIEEERIQRATQERMAMAERQEKDALLAKKREKAAVRHAIADKYGLARR 388
            MNSSFSFECQKASPYWGFDGAVMHDTYSILTSLLHLPGIEQARSRSVPYFVVFSLPSNVWRSMISLTNCFSRICPCLNFRDWERRGYETISSGTYLSSVPVSTNDTVVPLQRIKKGGGAALTTSSSDLAAVPVHPAIALPRYVMDEEVERCFACAVPFDFAQRRHHCRRCRNIFCAACTSRERPILLYMLSDPVRVCLRCGNEVGKENEFVDRHLKGLTEGLEVTVTRGVSAVLGRRQPVSLILSADLKTLQVVDLPSLPAYHDASRPHSSHDCPRVLMHFPLVDIGGVSEVGSLSFLILTSTGVRRKFETSGPGQRQAWVAAIREAARLLPSMAGLRKRIEEERIQRATQERMAMAERQEKDALLAKKREKAAVRHAIADKYGLARR
Sbjct:    1 MNSSFSFECQKASPYWGFDGAVMHDTYSILTSLLHLPGIEQARSRSVPYFVVFSLPSNVWRSMISLTNCFSRICPCLNFRDWERRGYETISSGTYLSSVPVSTNDTVVPLQRIKKGGGAALTTSSSDLAAVPVHPAIALPRYVMDEEVERCFACAVPFDFAQRRHHCRRCRNIFCAACTSRERPILLYMLSDPVRVCLRCGNEVGKENEFVDRHLKGLTEGLEVTVTRGVSAVLGRRQPVSLILSADLKTLQVVDLPSLPAYHDASRPHSSHDCPRVLMHFPLVDIGGVSEVGSLSFLILTSTGVRRKFETSGPGQRQAWVAAIREAARLLPSMAGLRKRIEEERIQRATQERMAMAERQEKDALLAKKREKAAVRHAIADKYGLARR 388          
BLAST of EWM25320.1 vs. NCBI_GenBank
Match: gi|553186420|ref|XP_005854414.1| (zinc fyve domain containing 21 [Nannochloropsis gaditana CCMP526] >gi|422294640|gb|EKU21940.1| zinc fyve domain containing 21 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 661.374 bits (1705), Expect = 0.000e+0
Identity = 322/326 (98.77%), Postives = 324/326 (99.39%), Query Frame = 0
Query:   63 MISLTNCFSRICPCLNFRDWERRGYETISSGTYLSSVPVSTNDTVVPLQRIKKGGGAALTTSSSDLAAVPVHPAIALPRYVMDEEVERCFACAVPFDFAQRRHHCRRCRNIFCAACTSRERPILLYMLSDPVRVCLRCGNEVGKENEFVDRHLKGLTEGLEVTVTRGVSAVLGRRQPVSLILSADLKTLQVVDLPSLPAYHDASRPHSSHDCPRVLMHFPLVDIGGVSEVGSLSFLILTSTGVRRKFETSGPGQRQAWVAAIREAARLLPSMAGLRKRIEEERIQRATQERMAMAERQEKDALLAKKREKAAVRHAIADKYGLARR 388
            MISLTNC SRICPCLNFRDWERRGYETISSGTYLSSVPVSTNDTVVPLQRIKKGGGAALTTSSSDLAAVPVHPAIALPRYVMDEEVERCFACAVPFDFAQRRHHCRRCRNIFCAACTSRERP+LLY LSDPVRVCLRCGNEVGKENEFVDRHLKGLTEGLEVTVTRGVSAVLGRRQPVSLILSADLKTLQVVDLPSLPAYHDASRPHSSHDCPRVLMHFPLVDIGGVSEVGSLSFLILTSTGVRRKFETSGPGQRQAWVAAIREAARLLPSMAGLRKRIEEERIQRATQERMAMAERQEKDALLAKKREKAA+RHAIADKYGLARR
Sbjct:    1 MISLTNCISRICPCLNFRDWERRGYETISSGTYLSSVPVSTNDTVVPLQRIKKGGGAALTTSSSDLAAVPVHPAIALPRYVMDEEVERCFACAVPFDFAQRRHHCRRCRNIFCAACTSRERPVLLYRLSDPVRVCLRCGNEVGKENEFVDRHLKGLTEGLEVTVTRGVSAVLGRRQPVSLILSADLKTLQVVDLPSLPAYHDASRPHSSHDCPRVLMHFPLVDIGGVSEVGSLSFLILTSTGVRRKFETSGPGQRQAWVAAIREAARLLPSMAGLRKRIEEERIQRATQERMAMAERQEKDALLAKKREKAALRHAIADKYGLARR 326          
BLAST of EWM25320.1 vs. NCBI_GenBank
Match: gi|957848223|ref|XP_014674613.1| (PREDICTED: zinc finger FYVE domain-containing protein 21-like [Priapulus caudatus])

HSP 1 Score: 98.5969 bits (244), Expect = 2.529e-20
Identity = 60/202 (29.70%), Postives = 97/202 (48.02%), Query Frame = 0
Query:  137 IALPRYVMDEEVERCFACAVPFDFAQRRHHCRRCRNIFCAACTSRERPILLYMLSDPVRVCLRCGNEVGKENEFVDRHLKGLTEGLEVTVTRGVSAVLGRRQPVSLILSADLKTLQVVDLPSLPAYHDASRPHSSHDCPRVLMHFPLVDIGGVSEVGSLSFLILTSTGVRRKFET-----SGPGQR--QAWVAAIREAARLL 331
            ++ P +V D+E  RC  C   FDF +RRHHCRRC  I+C+ C+    P+      DPVR+C RC     KENEF D+ LK LT G    +   +S V   +  V+  LS D + L++  +P      D   P   +    + +  P  ++ G S+   ++       GV R+        S P  +  ++W+  +++A  ++
Sbjct:   32 LSEPHWVPDKECSRCTGCQARFDFLKRRHHCRRCGQIYCSVCSGNLTPLPRMCFLDPVRLCARCSTVTTKENEFFDKQLKALTTGSTFKLL-PISDVTMDQFIVTCKLSPDYRFLEIDGMP-----EDTLEPIDVNQVISLKIKCP-NNMQGTSQPTMVTVTFSDQQGVNREITLDTGLPSSPTHKTSRSWIVGLQKAMNMI 226          
BLAST of EWM25320.1 vs. NCBI_GenBank
Match: gi|591376635|ref|XP_007062984.1| (PREDICTED: zinc finger FYVE domain-containing protein 21 isoform X2 [Chelonia mydas])

HSP 1 Score: 96.6709 bits (239), Expect = 1.461e-19
Identity = 66/227 (29.07%), Postives = 92/227 (40.53%), Query Frame = 0
Query:  118 GAALTTSSSDLAAVPVHPA------IALPRYVMDEEVERCFACAVPFDFAQRRHHCRRCRNIFCAACTSRERPILLYMLSDPVRVCLRCGNEVGKENEFVDRHLKGLTEGLEVTVTRGVSAV-------LGRRQPVSLILSADLKTLQVVDLPSLPAYHDASRPHSSHDCPRVLMHFPLVDIGGVSEVGSLSFLILTSTGVRRKFETSGPGQRQAWVAAIREAARLL 331
            G  L  SSS L  VP H A      +  P +V D++  RC  C   FDF  R+HHCRRC   FC  C S++ P+      DPVR C  C     KE EF D+ LK L  G    V RG S         L   Q    +       +++  + ++    +   P   +   R         + G  E+  + F         +K          AW+AA+ +AA+LL
Sbjct:    9 GKKLVRSSSGLRMVPEHHAARSPFGLDEPPWVPDKDCPRCMQCETKFDFITRKHHCRRCGKCFCDKCCSKKVPLSRMCFVDPVRQCAECALISQKETEFYDKQLKVLMNGATFCVARGTSEKSEMMVCRLSNNQRYLFLDGDSHYEIEIAQISTVQILTEGFTPGGGN--TRATGMLLQYKVPGSEELTQIKFTASEDFNSNKKLSA-------AWLAAMHKAAKLL 226          
BLAST of EWM25320.1 vs. NCBI_GenBank
Match: gi|1051161011|ref|XP_017663000.1| (PREDICTED: zinc finger FYVE domain-containing protein 21 isoform X2 [Lepidothrix coronata])

HSP 1 Score: 96.2857 bits (238), Expect = 1.987e-19
Identity = 70/230 (30.43%), Postives = 95/230 (41.30%), Query Frame = 0
Query:  116 GGGAALTTSSSDLAAVPVHPA------IALPRYVMDEEVERCFACAVPFDFAQRRHHCRRCRNIFCAACTSRERPILLYMLSDPVRVCLRCGNEVGKENEFVDRHLKGLTEGLEVTVTRGVS-------AVLGRRQPVSLILSADLK-TLQVVDLPSLPAYHDASRPHSSHDCPRVLMHFPLVDIGGVSEVGSLSFLILTSTGVRRKFETSGPGQRQAWVAAIREAARLL 331
            G    L  S S L  VP H A      +  P +V D+E  RC  C   FDF  R+HHCRRC   FC  C S++ P+      DPVR C  C     KE EF D+ LK L  G    VT G S         L   Q   L+L  D    ++++ + ++    +   P   +   R +       + G  EV  + F         RK   S       W+AA+ +A +LL
Sbjct:    4 GDAKKLVRSPSGLRMVPEHRAARSPFGLDEPPWVPDKECPRCMQCDTKFDFITRKHHCRRCGKCFCDKCCSKKVPLPRMCFVDPVRQCAECALVSQKETEFYDKQLKVLMNGATFFVTLGTSDKSELMVCRLSSNQRY-LVLDGDSHYEIEIIQISTVQILTEGFTPGGGNT--RAIGMILQYKVPGSEEVTQMKFTAGEDFNCNRKLSAS-------WLAAMHKATKLL 223          
BLAST of EWM25320.1 vs. NCBI_GenBank
Match: gi|1190446376|ref|XP_020826795.1| (zinc finger FYVE domain-containing protein 21 isoform X2 [Phascolarctos cinereus])

HSP 1 Score: 96.2857 bits (238), Expect = 2.242e-19
Identity = 67/230 (29.13%), Postives = 95/230 (41.30%), Query Frame = 0
Query:  115 KGGGAALTTSSSDLAAVPVHPAIALP------RYVMDEEVERCFACAVPFDFAQRRHHCRRCRNIFCAACTSRERPILLYMLSDPVRVCLRCGNEVGKENEFVDRHLKGLTEGLEVTVTRGVSAV-------LGRRQPVSLILSADLKTLQVVDLPSLPAYHDASRPHSSHDCPRVLMHFPLVDIGGVSEVGSLSFLILTSTGVRRKFETSGPGQRQAWVAAIREAARLL 331
            +G G  L  S S L  VP H A + P      ++V D+E  RC  C + FDF  R+HHCRRC   FC  C S++ P+      DPVR C  C     KE EF D+ LK L  G    VT G S         L   Q    +       +++  + ++    +   P   +   R           G  +V  + F     +   +K       Q   W+AA+ +AA+LL
Sbjct:   15 RGDGKKLVRSPSGLRMVPEHQAFSSPFGLDEPQWVPDKECPRCMQCDIKFDFITRKHHCRRCGKCFCDKCCSKKVPLPRMCFVDPVRQCAECVLVSQKEMEFYDKQLKVLMNGATFCVTVGTSEKPELMVCRLSNNQRYLFLDGDSHYEIEIAHISTVQILTEGFTPGGGN--ARATGMLLQYKEPGAQDVTQVKFTASEDSNSNKK-------QSATWLAAMHKAAKLL 235          
BLAST of EWM25320.1 vs. NCBI_GenBank
Match: gi|543349882|ref|XP_005520148.1| (PREDICTED: zinc finger FYVE domain-containing protein 21 isoform X2 [Pseudopodoces humilis])

HSP 1 Score: 95.9005 bits (237), Expect = 2.310e-19
Identity = 71/230 (30.87%), Postives = 95/230 (41.30%), Query Frame = 0
Query:  116 GGGAALTTSSSDLAAVPVHPA------IALPRYVMDEEVERCFACAVPFDFAQRRHHCRRCRNIFCAACTSRERPILLYMLSDPVRVCLRCGNEVGKENEFVDRHLKGLTEGLEVTVTRGVS-------AVLGRRQPVSLILSADLK-TLQVVDLPSLPAYHDASRPHSSHDCPRVLMHFPLVDIGGVSEVGSLSFLILTSTGVRRKFETSGPGQRQAWVAAIREAARLL 331
            G    L  S S L  VP H A      +  P +V D+E  RC  C   FDF  R+HHCRRC   FC  C S++ P+      DPVR C  C     KE EF D+ LK L  G    VT G S         L   Q   LIL  D    +++V + ++    +   P   +   R +       + G  EV  + F         +K          AW+AA+ +A +LL
Sbjct:    4 GDAKKLVRSPSGLRMVPEHRAARSPFGLDEPPWVPDKECPRCMQCDTKFDFITRKHHCRRCGKCFCDKCCSKKVPLPRMCFVDPVRQCAECALVSQKETEFYDKQLKVLMNGATFFVTLGTSDKSELMVCRLSNNQRY-LILDGDSHYEIEIVQISTVQILTEGFTPGGGNT--RAVGMILQYKVPGSEEVTQMKFTAGEDFSCNKKLSA-------AWLAAMHKATKLL 223          
BLAST of EWM25320.1 vs. NCBI_GenBank
Match: gi|530584128|ref|XP_005285876.1| (PREDICTED: zinc finger FYVE domain-containing protein 21 isoform X2 [Chrysemys picta bellii])

HSP 1 Score: 95.9005 bits (237), Expect = 2.486e-19
Identity = 66/227 (29.07%), Postives = 92/227 (40.53%), Query Frame = 0
Query:  118 GAALTTSSSDLAAVPVHPA------IALPRYVMDEEVERCFACAVPFDFAQRRHHCRRCRNIFCAACTSRERPILLYMLSDPVRVCLRCGNEVGKENEFVDRHLKGLTEGLEVTVTRGVSAV-------LGRRQPVSLILSADLKTLQVVDLPSLPAYHDASRPHSSHDCPRVLMHFPLVDIGGVSEVGSLSFLILTSTGVRRKFETSGPGQRQAWVAAIREAARLL 331
            G  L  SSS L  VP H A      +  P +V D++  RC  C   FDF  R+HHCRRC   FC  C S++ P+      DPVR C  C     KE EF D+ LK L  G   +V RG S         L   Q    +       +++  + ++    +   P   +   R           G  E+  + F         +K          AW+AA+ +AA+LL
Sbjct:    9 GKKLVRSSSGLRMVPEHHAARSPFGLDEPPWVPDKDCPRCMQCETKFDFITRKHHCRRCGKCFCDKCCSKKVPLPRMCFVDPVRQCAECAFISQKETEFYDKQLKVLMNGATFSVARGTSEKSEMMVCRLSNNQRYLFLDGDSHYEIEIAQISTVQILTEGFTPGGGN--TRATGMLLQYKAPGSEELTQMKFTASEDFNSNKKLSA-------AWLAAMHKAAKLL 226          
BLAST of EWM25320.1 vs. NCBI_GenBank
Match: gi|350536641|ref|NP_001232489.1| (zinc finger FYVE domain-containing protein 21 [Taeniopygia guttata] >gi|1209982683|ref|XP_021384586.1| zinc finger FYVE domain-containing protein 21 isoform X2 [Lonchura striata domestica] >gi|197127115|gb|ACH43613.1| putative zinc finger FYVE domain containing 21 [Taeniopygia guttata] >gi|1208029628|gb|OWK56102.1| Zinc finger FYVE domain-containing protein 21 [Lonchura striata domestica])

HSP 1 Score: 95.5153 bits (236), Expect = 3.348e-19
Identity = 70/230 (30.43%), Postives = 95/230 (41.30%), Query Frame = 0
Query:  116 GGGAALTTSSSDLAAVPVHPA------IALPRYVMDEEVERCFACAVPFDFAQRRHHCRRCRNIFCAACTSRERPILLYMLSDPVRVCLRCGNEVGKENEFVDRHLKGLTEGLEVTVTRGVS-------AVLGRRQPVSLILSADLK-TLQVVDLPSLPAYHDASRPHSSHDCPRVLMHFPLVDIGGVSEVGSLSFLILTSTGVRRKFETSGPGQRQAWVAAIREAARLL 331
            G    L  S S L  VP H A      +  P +V D+E  RC  C   FDF  R+HHCRRC   FC  C S++ P+      DPVR C  C     KE EF D+ LK L  G    VT G S         L   Q   LIL  D    ++++ + ++    +   P   +   R +       + G  EV  + F         +K          AW+AA+ +A +LL
Sbjct:    4 GDAKKLVRSPSGLRMVPEHRAARSPFGLDEPPWVPDKECPRCMQCDTKFDFITRKHHCRRCGKCFCDKCCSKKVPLPRMCFVDPVRQCAECALVSQKETEFYDKQLKVLMNGATFFVTLGTSDKSELMVCRLSNNQRY-LILDGDSHYEIEIIQISTVQILTEGFTPGGGNT--RAIGMILQYKVPGSEEVTQMKFTAGEDFSSNKKLSA-------AWLAAMHKATKLL 223          
BLAST of EWM25320.1 vs. NCBI_GenBank
Match: gi|1051161008|ref|XP_017662999.1| (PREDICTED: zinc finger FYVE domain-containing protein 21 isoform X1 [Lepidothrix coronata])

HSP 1 Score: 95.9005 bits (237), Expect = 3.349e-19
Identity = 75/246 (30.49%), Postives = 97/246 (39.43%), Query Frame = 0
Query:  116 GGGAALTTSSSDLAAVPVHPA------IALPRYVMDEEVERCFACAVPFDFAQRRHHCRRCRNIFCAACTSRERPILLYMLSDPVRVCLRCGNEVGKENEFVDRHLKGLTEGLEVTVTRGVS-------AVLGRRQPVSLILSAD---------LKTLQVVDLPSLPAYHD--------ASRPHSSHDCPRVLMHFPLVDIGGVSEVGSLSFLILTSTGVRRKFETSGPGQRQAWVAAIREAARLL 331
            G    L  S S L  VP H A      +  P +V D+E  RC  C   FDF  R+HHCRRC   FC  C S++ P+      DPVR C  C     KE EF D+ LK L  G    VT G S         L   Q   L+L  D         + T+Q++     P   D         S+P +     R +       + G  EV  + F         RK   S       W+AA+ +A +LL
Sbjct:    4 GDAKKLVRSPSGLRMVPEHRAARSPFGLDEPPWVPDKECPRCMQCDTKFDFITRKHHCRRCGKCFCDKCCSKKVPLPRMCFVDPVRQCAECALVSQKETEFYDKQLKVLMNGATFFVTLGTSDKSELMVCRLSSNQRY-LVLDGDSHYEIEIIQISTVQILTEGFTPGEKDIHTYTSLLESQPVTEGGNTRAIGMILQYKVPGSEEVTQMKFTAGEDFNCNRKLSAS-------WLAAMHKATKLL 241          
The following BLAST results are available for this feature:
BLAST of EWM25320.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107076|gb|EWM25320.1|0.000e+0100.00zinc fyve domain containing 21 [Nannochloropsis ga... [more]
gi|553186420|ref|XP_005854414.1|0.000e+098.77zinc fyve domain containing 21 [Nannochloropsis ga... [more]
gi|957848223|ref|XP_014674613.1|2.529e-2029.70PREDICTED: zinc finger FYVE domain-containing prot... [more]
gi|591376635|ref|XP_007062984.1|1.461e-1929.07PREDICTED: zinc finger FYVE domain-containing prot... [more]
gi|1051161011|ref|XP_017663000.1|1.987e-1930.43PREDICTED: zinc finger FYVE domain-containing prot... [more]
gi|1190446376|ref|XP_020826795.1|2.242e-1929.13zinc finger FYVE domain-containing protein 21 isof... [more]
gi|543349882|ref|XP_005520148.1|2.310e-1930.87PREDICTED: zinc finger FYVE domain-containing prot... [more]
gi|530584128|ref|XP_005285876.1|2.486e-1929.07PREDICTED: zinc finger FYVE domain-containing prot... [more]
gi|350536641|ref|NP_001232489.1|3.348e-1930.43zinc finger FYVE domain-containing protein 21 [Tae... [more]
gi|1051161008|ref|XP_017662999.1|3.349e-1930.49PREDICTED: zinc finger FYVE domain-containing prot... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5368rna5368Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications