rna5364, rna5364 (mRNA) Nannochloropsis gaditana

Overview
Namerna5364
Unique Namerna5364
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1539
Alignment locationCM002465.1:810639..811742 -

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Properties
Property NameValue
Productcanine-like rab-type small g protein
Orig transcript idgnl|cribi|Naga_100281g7.5088.mrna
Orig protein idgnl|cribi|Naga_100281g7.5088
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:810639..811742 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100281g7gene5185Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5364rna5364-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25322.1cds5351Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5364 ID=rna5364|Name=rna5364|organism=Nannochloropsis gaditana|type=mRNA|length=1539bp
TATACCTTCAAAACGAGCCAGTCCTACGGGACCATAGCCTTGCTGGTCTA
ATCAGAGAAACGGGACCTGTAGTATATTTGGAGAGCAGCGAGGGGAATCA
CGCTCTTTTGCGTGTTTGTGCAAGGACAGAAGTATGGATGTTCTGCACTT
GCAGTGTCGTCTGTTGGCTCTCTGCAAGTGTGTCAACGGCGCGCACTCTA
ATGCTTGAGAGCCTGAAAATGAACTGCGAGGACAGTTCCTTTTCTTATGG
AACAGATACTGAATCCATCTTTCAAACGATCGAGCCATATTATATTCGAT
TGAGATCGTGTCAGTATCTGGTCCAAAGCCTCAATTTATGGCGAAGAGAG
AGAGGGACCGTATGGATGTAACGACGGGATCCAATCAAGGAAAGGGAACA
CATCTACTTTGATCTCTCAAAGCATTGCAATGCATATGAAATATACATGT
GCGTCATCTCATTGAAATGTCCAATAGTATAGGGAGCAACCTGACTTTCC
AGAAGCAATGCGTTTTCATGTCATCGCCCTGCTAATAGGAGCAGTCACCG
CGTGCCACGCTGCAGAAAGCGAGAAGAAAGGCGGTCCTATGCAGCGTGTC
AAACGTATGATGGCCACAGATGCAACTGCGGCTACAGCCACAAGTGCTGG
AGAAGAGGAGGATATTCAGGACTCCTGGAGCTTCGACTCTGTCCTTAGTG
GTGCCAGACGCTTAATAAACGGCGACCATGCAGGCATCCTCGCTGACATG
AGCATGGGAAAAGAGATGCAAGAGATCTTTGAAAACCCGGAAGTCTCCTA
CCAATTGCTCCAAGTCTTTCCCATGTTCAAGGTTCTTAACGGGGTGAAAG
AACTGAGCGCCAAGCCCAAAGAATTATTCACAAAAGCTGATAGCCTTAGT
GTCCTTGAGAGTTACCGAAACTTTGTCTCAACCGCTATTAAAAATATGAA
GGATATGGCGGATCCTGTGGGGATGGCCACCACCATGCAAAAGTACTCGG
ATGCCATGAGTCCTGTCACACAAAATCCGGATGGTTCCCACAGAGCTTTG
ACAGAAGAAGAGAGACGTATGACGGAGCTTGTCCGACGCGTGGAGGTACG
AATCTAGAGAAGAGGATTTGCAATACCATCTATCCCGAACTCATCTGTAT
TGCTCGTCGCATTCACACGCAGGAGGGCGACCCGGAAGCCACCGGCCAGC
TCCACGACAGGATTGCCGACAGCCTTTGGGGAAATACCATCGATTTGTCG
GAGTTCAAGGGCAAAGAACCCGAGGCTCTGAAGGTGCTCCGAGAGATCGT
CATGAAGGAGGAGCCCAAGGTCTTCGACCTCATTACGGGCGAGGACCCGC
TCGTCAGAAAAGTTCTTTCCGACCCCAGCATGCTCTTCGAGCTGGACACC
ATGGCGACGTAAAATTAAATGAAGTAAATGAGTCCATGCCTTGCAGCGCG
AAGGGATGTCAAAAAAGCAAATGTCGGAAAATAATTTTACCGTTATAAGG
AAAGAAGAAAGATATAACGTGTGCTTATTCAAAAAATGG
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protein sequence of rna5364

>rna5364-protein ID=rna5364-protein|Name=rna5364|organism=Nannochloropsis gaditana|type=polypeptide|length=231bp
MLSCEEEAKLPPSTTTQLHPQESRDDFRTMSSGGGSSSNNRVCHFKLVLL
GDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQAVVLEDSTVKFEIWDT
AGQERYRSLAPMYYRGASAAIVVYDITNAESFKGAKSWVKELQRRGDPSV
IIALAGNKADLAGTRRKVDLKDAEEYARENGLLHFETSAKDAQNVKTLFV
EIAKRLPKAVAPVEREAFPIVAPKASKRSCC
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mRNA from alignment at CM002465.1:810639..811742-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5364 ID=rna5364|Name=rna5364|organism=Nannochloropsis gaditana|type=mRNA|length=1104bp|location=Sequence derived from alignment at CM002465.1:810639..811742- (Nannochloropsis gaditana)
ATGCTTTCTTGCGAGGAAGAGGCAAAGCTCCCGCCCAGTGTGATGATCAG
GCCAGGCGAAGAACTGAGCGACTTCTTTATGCACCACAACGCGTGACACT
TACCCTTTTCCCCTCCAACGCATCTCAGACAACCACTCAGTTGCACCCCC
AAGAAAGTAGAGACGATTTCAGAACCATGAGCAGCGGCGGCGGCAGCAGT
AGCAACAACCGGGTGTGCCATTTCAAGCTTGTCCTTCTGGGCGACACAGC
AGTTGGCAAATCATGCTTGGTTGTCCGCTTCGTCCGAGATGAATTTTTTG
AATACCAGGTACGAGATATGACAAGAGGTTAAATAGGGGCGTTTGGTAAG
GGAATAACGAGGTTGGGGGGGGAAAGAAAGAAACCTTCATCGGTTCACAT
TATGAGAGCAGGAACAGCCGTGTCTCGGGGATTGCCAGTAGAAGGGGTTG
ACCTCAAAAAACGTGACAGTAAACTCAGCTTTAATTTAAGATCAGCAATC
TAAACGGAAGCGTGATTAGGAAAATGGTAATTCATGTCTGTTTCGAAAAA
GATAAGTCGGTGTTTACTTAATCCCTACCTTCTTCCACCATTCGCTGTTA
CACTCCTTCACACGTCACGTGAGATAGGAACCTACCATTGGTGCAGCTTT
CCTTACGCAAGCTGTAGTACTGGAAGATTCCACAGTTAAATTCGAAATAT
GGGACACAGCTGGCCAAGAACGTTACCGGTCGCTAGCCCCCATGTACTAC
AGAGGAGCTTCGGCGGCTATTGTCGTTTATGACATCACCAATGCGGAGAG
CTTCAAAGGTGCCAAATCGTGGGTCAAAGAGCTACAAAGGCGGGGAGATC
CCAGCGTAATCATCGCTCTGGCAGGAAATAAGGCAGATCTGGCGGGGACG
CGTAGGAAGGTTGATTTAAAGGACGCTGAGGAATACGCCCGAGAGAATGG
CTTACTGCATTTCGAAACCAGCGCAAAAGATGCTCAAAATGTCAAAACCC
TTTTTGTTGAGATCGCGAAGCGATTGCCCAAGGCTGTTGCACCCGTGGAG
CGGGAGGCTTTTCCTATTGTGGCCCCGAAAGCATCAAAACGGTCGTGTTG
CTGA
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Coding sequence (CDS) from alignment at CM002465.1:810639..811742-

>rna5364 ID=rna5364|Name=rna5364|organism=Nannochloropsis gaditana|type=CDS|length=2088bp|location=Sequence derived from alignment at CM002465.1:810639..811742- (Nannochloropsis gaditana)
GAACCTACCATTGGTGCAGCTTTCCTTACGCAAGCTGTAGTACTGGAAGA
TTCCACAGTTAAATTCGAAATATGGGACACAGCTGGCCAAGAACGTTACC
GGTCGCTAGCCCCCATGTACTACAGAGGAGCTTCGGCGGCTATTGTCGTT
TATGACATCACCAATGCGGAGAGCTTCAAAGGTGCCAAATCGTGGGTCAA
AGAGCTACAAAGGCGGGGAGATCCCAGCGTAATCATCGCTCTGGCAGGAA
ATAAGGCAGATCTGGCGGGGACGCGTAGGAAGGTTGATTTAAAGGACGCT
GAGGAATACGCCCGAGAGAATGGCTTACTGCATTTCGAAACCAGCGCAAA
AGATGCTCAAAATGTCAAAACCCTTTTTGTTGAGATCGCGAAGCGATTGC
CCAAGGCTGTTGCACCCGTGGAGCGGGAGGCTTTTCCTATTGTGGCCCCG
AAAGCATCAAAACGGTCGTGTTGCTGAACAACCACTCAGTTGCACCCCCA
AGAAAGTAGAGACGATTTCAGAACCATGAGCAGCGGCGGCGGCAGCAGTA
GCAACAACCGGGTGTGCCATTTCAAGCTTGTCCTTCTGGGCGACACAGCA
GTTGGCAAATCATGCTTGGTTGTCCGCTTCGTCCGAGATGAATTTTTTGA
ATACCAGATGCTTTCTTGCGAGGAAGAGGCAAAGCTCCCGCCCAGTGAAC
CTACCATTGGTGCAGCTTTCCTTACGCAAGCTGTAGTACTGGAAGATTCC
ACAGTTAAATTCGAAATATGGGACACAGCTGGCCAAGAACGTTACCGGTC
GCTAGCCCCCATGTACTACAGAGGAGCTTCGGCGGCTATTGTCGTTTATG
ACATCACCAATGCGGAGAGCTTCAAAGGTGCCAAATCGTGGGTCAAAGAG
CTACAAAGGCGGGGAGATCCCAGCGTAATCATCGCTCTGGCAGGAAATAA
GGCAGATCTGGCGGGGACGCGTAGGAAGGTTGATTTAAAGGACGCTGAGG
AATACGCCCGAGAGAATGGCTTACTGCATTTCGAAACCAGCGCAAAAGAT
GCTCAAAATGTCAAAACCCTTTTTGTTGAGATCGCGAAGCGATTGCCCAA
GGCTGTTGCACCCGTGGAGCGGGAGGCTTTTCCTATTGTGGCCCCGAAAG
CATCAAAACGGTCGTGTTGCTGAACAACCACTCAGTTGCACCCCCAAGAA
AGTAGAGACGATTTCAGAACCATGAGCAGCGGCGGCGGCAGCAGTAGCAA
CAACCGGGTGTGCCATTTCAAGCTTGTCCTTCTGGGCGACACAGCAGTTG
GCAAATCATGCTTGGTTGTCCGCTTCGTCCGAGATGAATTTTTTGAATAC
CAGATGCTTTCTTGCGAGGAAGAGGCAAAGCTCCCGCCCAGTGAACCTAC
CATTGGTGCAGCTTTCCTTACGCAAGCTGTAGTACTGGAAGATTCCACAG
TTAAATTCGAAATATGGGACACAGCTGGCCAAGAACGTTACCGGTCGCTA
GCCCCCATGTACTACAGAGGAGCTTCGGCGGCTATTGTCGTTTATGACAT
CACCAATGCGGAGAGCTTCAAAGGTGCCAAATCGTGGGTCAAAGAGCTAC
AAAGGCGGGGAGATCCCAGCGTAATCATCGCTCTGGCAGGAAATAAGGCA
GATCTGGCGGGGACGCGTAGGAAGGTTGATTTAAAGGACGCTGAGGAATA
CGCCCGAGAGAATGGCTTACTGCATTTCGAAACCAGCGCAAAAGATGCTC
AAAATGTCAAAACCCTTTTTGTTGAGATCGCGAAGCGATTGCCCAAGGCT
GTTGCACCCGTGGAGCGGGAGGCTTTTCCTATTGTGGCCCCGAAAGCATC
AAAACGGTCGTGTTGCTGAACAACCACTCAGTTGCACCCCCAAGAAAGTA
GAGACGATTTCAGAACCATGAGCAGCGGCGGCGGCAGCAGTAGCAACAAC
CGGGTGTGCCATTTCAAGCTTGTCCTTCTGGGCGACACAGCAGTTGGCAA
ATCATGCTTGGTTGTCCGCTTCGTCCGAGATGAATTTTTTGAATACCAGA
TGCTTTCTTGCGAGGAAGAGGCAAAGCTCCCGCCCAGT
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Synonyms
Publications