EWM25322.1, cds5351 (CDS) Nannochloropsis gaditana

Overview
NameEWM25322.1
Unique Namecds5351
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:811704..811742 -
Alignment locationCM002465.1:811435..811614 -
Alignment locationCM002465.1:810639..811115 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25322.1
Productcanine-like rab-type small g protein
Orig transcript idgnl|cribi|Naga_100281g7.5088.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:811704..811742 -
CM002465.1supercontigCM002465.1:811435..811614 -
CM002465.1supercontigCM002465.1:810639..811115 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0000166nucleotide binding
GO:0003924GTPase activity
GO:0005525GTP binding
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO:0006913nucleocytoplasmic transport
GO:0006886intracellular protein transport
GO:0015031protein transport
GO:0007165signal transduction
GO:0007264small GTPase mediated signal transduction
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO:0005768endosome
GO:0005622intracellular
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR005225Small_GTP-bd_dom
IPR027417P-loop_NTPase
IPR002041Ran_GTPase
IPR003579Small_GTPase_Rab_type
IPR003578Small_GTPase_Rho
IPR020849Small_GTPase_Ras
IPR001806Small_GTPase
Homology
BLAST of EWM25322.1 vs. NCBI_GenBank
Match: gi|585107078|gb|EWM25322.1| (canine-like rab-type small g protein [Nannochloropsis gaditana])

HSP 1 Score: 479.174 bits (1232), Expect = 3.764e-171
Identity = 231/231 (100.00%), Postives = 231/231 (100.00%), Query Frame = 0
Query:    1 MLSCEEEAKLPPSTTTQLHPQESRDDFRTMSSGGGSSSNNRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQAVVLEDSTVKFEIWDTAGQERYRSLAPMYYRGASAAIVVYDITNAESFKGAKSWVKELQRRGDPSVIIALAGNKADLAGTRRKVDLKDAEEYARENGLLHFETSAKDAQNVKTLFVEIAKRLPKAVAPVEREAFPIVAPKASKRSCC 231
            MLSCEEEAKLPPSTTTQLHPQESRDDFRTMSSGGGSSSNNRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQAVVLEDSTVKFEIWDTAGQERYRSLAPMYYRGASAAIVVYDITNAESFKGAKSWVKELQRRGDPSVIIALAGNKADLAGTRRKVDLKDAEEYARENGLLHFETSAKDAQNVKTLFVEIAKRLPKAVAPVEREAFPIVAPKASKRSCC
Sbjct:    1 MLSCEEEAKLPPSTTTQLHPQESRDDFRTMSSGGGSSSNNRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQAVVLEDSTVKFEIWDTAGQERYRSLAPMYYRGASAAIVVYDITNAESFKGAKSWVKELQRRGDPSVIIALAGNKADLAGTRRKVDLKDAEEYARENGLLHFETSAKDAQNVKTLFVEIAKRLPKAVAPVEREAFPIVAPKASKRSCC 231          
BLAST of EWM25322.1 vs. NCBI_GenBank
Match: gi|553186431|ref|XP_005854416.1| (Ras-related protein Rab-5C, partial [Nannochloropsis gaditana CCMP526] >gi|422294642|gb|EKU21942.1| Ras-related protein Rab-5C, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 449.514 bits (1155), Expect = 4.622e-159
Identity = 216/218 (99.08%), Postives = 218/218 (100.00%), Query Frame = 0
Query:   14 TTTQLHPQESRDDFRTMSSGGGSSSNNRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQAVVLEDSTVKFEIWDTAGQERYRSLAPMYYRGASAAIVVYDITNAESFKGAKSWVKELQRRGDPSVIIALAGNKADLAGTRRKVDLKDAEEYARENGLLHFETSAKDAQNVKTLFVEIAKRLPKAVAPVEREAFPIVAPKASKRSCC 231
            TTTQLHPQE+RDDFRTM+SGGGSSSNNRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQAVVLEDSTVKFEIWDTAGQERYRSLAPMYYRGASAAIVVYDITNAESFKGAKSWVKELQRRGDPSVIIALAGNKADLAGTRRKVDLKDAEEYARENGLLHFETSAKDAQNVKTLFVEIAKRLPKAVAPVEREAFPIVAPKASKRSCC
Sbjct:   44 TTTQLHPQETRDDFRTMTSGGGSSSNNRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQAVVLEDSTVKFEIWDTAGQERYRSLAPMYYRGASAAIVVYDITNAESFKGAKSWVKELQRRGDPSVIIALAGNKADLAGTRRKVDLKDAEEYARENGLLHFETSAKDAQNVKTLFVEIAKRLPKAVAPVEREAFPIVAPKASKRSCC 261          
BLAST of EWM25322.1 vs. NCBI_GenBank
Match: gi|219111761|ref|XP_002177632.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217410517|gb|EEC50446.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 320.087 bits (819), Expect = 1.086e-108
Identity = 153/202 (75.74%), Postives = 175/202 (86.63%), Query Frame = 0
Query:   30 MSSGGGSSSNNRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQAVVLEDSTVKFEIWDTAGQERYRSLAPMYYRGASAAIVVYDITNAESFKGAKSWVKELQRRGDPSVIIALAGNKADLAGTRRKVDLKDAEEYARENGLLHFETSAKDAQNVKTLFVEIAKRLPKAVAPVEREAFPIVAPKASKRSCC 231
            M++  GS++N RV HFKLVLLGDTAVGKSCLVVRFVRDEFFE+QEPTIGAAFLTQ V L+D+TVKFEIWDTAGQERYRSLAPMYYRGASAAIVVYDITN +SF GAKSWVKELQRRGDP+V+IALAGNKADL  TRR V+ ++A  YA+ENG+LH ETSAK+A NVK+LF+EIAK LPK     E+EAFPI+  +   R+CC
Sbjct:    1 MANHPGSAANARVHHFKLVLLGDTAVGKSCLVVRFVRDEFFEFQEPTIGAAFLTQTVQLDDATVKFEIWDTAGQERYRSLAPMYYRGASAAIVVYDITNPDSFTGAKSWVKELQRRGDPNVVIALAGNKADLE-TRRAVEFEEANAYAQENGILHLETSAKNANNVKSLFIEIAKTLPKNAPQPEKEAFPILQQQQETRNCC 201          
BLAST of EWM25322.1 vs. NCBI_GenBank
Match: gi|1072224676|gb|OEU09425.1| (ras-related small GTPase Rab5 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 317.39 bits (812), Expect = 9.688e-108
Identity = 150/194 (77.32%), Postives = 172/194 (88.66%), Query Frame = 0
Query:   38 SNNRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQAVVLEDSTVKFEIWDTAGQERYRSLAPMYYRGASAAIVVYDITNAESFKGAKSWVKELQRRGDPSVIIALAGNKADLAGTRRKVDLKDAEEYARENGLLHFETSAKDAQNVKTLFVEIAKRLPKAVAPVEREAFPIVAPKASKRSCC 231
            S++RV HFKLVLLGDTAVGKSCLVVRFVRDEFFE+QEPTIGAAFLTQ V L++STVKFEIWDTAGQERYRSLAPMYYRGA+AAI+VYDITN +SF GAKSWVKELQRRGDP+V+IALAGNKADL  +RRKV+ ++A+ YA ENG+LH ETSAK+A NVK LFVE+AK+LPK     EREAFP+ AP+   R+CC
Sbjct:    2 SSSRVHHFKLVLLGDTAVGKSCLVVRFVRDEFFEFQEPTIGAAFLTQTVQLDESTVKFEIWDTAGQERYRSLAPMYYRGAAAAIIVYDITNPDSFTGAKSWVKELQRRGDPNVVIALAGNKADLE-SRRKVEFEEAQSYAEENGILHLETSAKNANNVKALFVELAKKLPKNAPQPEREAFPLAAPQNDNRNCC 194          
BLAST of EWM25322.1 vs. NCBI_GenBank
Match: gi|298705900|emb|CBJ29030.1| (Rab5, RAB family GTPase [Ectocarpus siliculosus])

HSP 1 Score: 317.005 bits (811), Expect = 1.182e-107
Identity = 152/194 (78.35%), Postives = 171/194 (88.14%), Query Frame = 0
Query:   38 SNNRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQAVVLEDSTVKFEIWDTAGQERYRSLAPMYYRGASAAIVVYDITNAESFKGAKSWVKELQRRGDPSVIIALAGNKADLAGTRRKVDLKDAEEYARENGLLHFETSAKDAQNVKTLFVEIAKRLPKAVAPVEREAFPIVAPKASKRSCC 231
            S+ RVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQ V L+D+TVKFEIWDTAGQERYRSLAPMYYRGA+AAIVVYD+TN ESF GAKSWVKELQRRGDP+VIIALAGNKADL   RR+V  ++A  YA +NGL+H ETSAK AQNVK++FVEIA++LPKA    EREAFPI+ P+  ++S C
Sbjct:    2 SSGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQKVQLDDATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNKESFNGAKSWVKELQRRGDPNVIIALAGNKADLE-HRRQVQSEEARLYAEDNGLIHMETSAKSAQNVKSIFVEIAQKLPKATVQPEREAFPIMRPRTEQKSGC 194          
BLAST of EWM25322.1 vs. NCBI_GenBank
Match: gi|223995249|ref|XP_002287308.1| (canine-like rab-type small G protein [Thalassiosira pseudonana CCMP1335] >gi|220976424|gb|EED94751.1| canine-like rab-type small G protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 317.005 bits (811), Expect = 1.314e-107
Identity = 150/193 (77.72%), Postives = 168/193 (87.05%), Query Frame = 0
Query:   39 NNRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQAVVLEDSTVKFEIWDTAGQERYRSLAPMYYRGASAAIVVYDITNAESFKGAKSWVKELQRRGDPSVIIALAGNKADLAGTRRKVDLKDAEEYARENGLLHFETSAKDAQNVKTLFVEIAKRLPKAVAPVEREAFPIVAPKASKRSCC 231
            +NRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFE+QEPTIGAAFLTQ V L+D+TVKFEIWDTAGQERYRSLAPMYYRGA+AAIVVYDITN +SF GAKSWVKELQRRGD  V+IA+AGNKADL   RR+VD ++A  YA ENG+LH ETSAK+A NVK LFVEIA+RLPK+    +REAFPI+  K   R+CC
Sbjct:    2 SNRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEFQEPTIGAAFLTQTVALDDATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITNPDSFAGAKSWVKELQRRGDQDVVIAMAGNKADLEA-RRQVDFEEANAYAEENGILHMETSAKNANNVKALFVEIARRLPKSTQQPDREAFPIMPQKQESRNCC 193          
BLAST of EWM25322.1 vs. NCBI_GenBank
Match: gi|397569787|gb|EJK46965.1| (hypothetical protein THAOC_34347 [Thalassiosira oceanica])

HSP 1 Score: 314.309 bits (804), Expect = 1.930e-106
Identity = 153/206 (74.27%), Postives = 171/206 (83.01%), Query Frame = 0
Query:   38 SNNRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQAVVLEDSTVKFEIWDTAGQERYRSLAPMYYRGASAAIVVYDITNAESFKGAKSWVKELQRRGDPSVIIAL------------AGNKADLAGTRRKVDLKDAEEYARENGLLHFETSAKDAQNVKTLFVEIAKRLPKAVAPVEREAFPIVAPKASKRSCC 231
            SN+RVCHFKLVLLGDTAVGKSCLVVRFVRDEFFE+QEPTIGAAFLTQ V L+D+TVKFEIWDTAGQERYRSLAPMYYRGA+AAI+VYDITN +SF GAKSWVKELQRRGD +V+IA+            AGNKADL   RRKVD  +A +YA ENG+LH ETSAK+A NVK+LFVEIAK+LPKA    +REAFPI+  K   RSCC
Sbjct:    2 SNSRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEFQEPTIGAAFLTQTVALDDATVKFEIWDTAGQERYRSLAPMYYRGAAAAIIVYDITNPDSFAGAKSWVKELQRRGDQNVVIAMLTGSESDLITRQAGNKADLEA-RRKVDFNEANDYAEENGILHMETSAKNANNVKSLFVEIAKKLPKAQQQPDREAFPILPQKQESRSCC 206          
BLAST of EWM25322.1 vs. NCBI_GenBank
Match: gi|676394637|ref|XP_009040596.1| (hypothetical protein AURANDRAFT_55091 [Aureococcus anophagefferens] >gi|323448788|gb|EGB04682.1| hypothetical protein AURANDRAFT_55091 [Aureococcus anophagefferens])

HSP 1 Score: 307.76 bits (787), Expect = 5.945e-104
Identity = 147/194 (75.77%), Postives = 170/194 (87.63%), Query Frame = 0
Query:   38 SNNRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQAVVLEDSTVKFEIWDTAGQERYRSLAPMYYRGASAAIVVYDITNAESFKGAKSWVKELQRRGDPSVIIALAGNKADLAGTRRKVDLKDAEEYARENGLLHFETSAKDAQNVKTLFVEIAKRLPKAVAPVEREAFPIVAPKASKRSCC 231
            ++ RVCHFKLVLLGDTAVGKSCLVVRFVRDEFFE+QEPTIGAAFLTQ+V LE++TVKFEIWDTAGQERYRSLAPMYYRGA+AAIVVYDITN ESF GAKSWVKELQRRGDP+VIIALAGNKADL   RR V+ ++A++Y+ ENG+LH ETSAK+A +VK LF EIA++LPK     ER+AFPI+ PK ++   C
Sbjct:    2 ASGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEFQEPTIGAAFLTQSVNLENATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITNKESFNGAKSWVKELQRRGDPNVIIALAGNKADLQNKRR-VESEEAKQYSEENGILHMETSAKNATHVKDLFQEIARKLPKTPPQPERDAFPIIPPKHNENKVC 194          
BLAST of EWM25322.1 vs. NCBI_GenBank
Match: gi|695414947|ref|XP_009526435.1| (hypothetical protein PHYSODRAFT_346157 [Phytophthora sojae] >gi|348677560|gb|EGZ17377.1| hypothetical protein PHYSODRAFT_346157 [Phytophthora sojae] >gi|566022578|gb|ETI45489.1| hypothetical protein F443_09921 [Phytophthora parasitica P1569] >gi|567959877|gb|ETK85441.1| hypothetical protein L915_09718 [Phytophthora parasitica] >gi|567988610|gb|ETL38885.1| hypothetical protein L916_09622 [Phytophthora parasitica] >gi|568017813|gb|ETL91990.1| hypothetical protein L917_09545 [Phytophthora parasitica] >gi|568048229|gb|ETM45288.1| hypothetical protein L914_09588 [Phytophthora parasitica] >gi|570326200|gb|ETO74148.1| hypothetical protein F444_10016 [Phytophthora parasitica P1976] >gi|570950056|gb|ETP15313.1| hypothetical protein F441_09870 [Phytophthora parasitica CJ01A1] >gi|570983590|gb|ETP43389.1| hypothetical protein F442_09824 [Phytophthora parasitica P10297])

HSP 1 Score: 302.753 bits (774), Expect = 5.262e-102
Identity = 151/197 (76.65%), Postives = 165/197 (83.76%), Query Frame = 0
Query:   38 SNNRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQAVVLEDS-TVKFEIWDTAGQERYRSLAPMYYRGASAAIVVYDITNAESFKGAKSWVKELQRRGDPSVIIALAGNKADLAGTRRKVDLKDAEEYARENGLLHFETSAKDAQNVKTLFVEIAKRLPKAVAPVEREAFPIVAPKA--SKRSCC 231
            S  + CHFKLVLLGDTAVGKSCLVVRFVRDEFFE+QEPTIGAAFLTQ V LED  TVKFEIWDTAGQERYRSLAPMYYRGA+AAIVVYD+TN +SF GAKSWVKELQRRGDP+V+IALAGNKADL   RRKV+ ++A +YA +N +LH ETSAK A NVK LFV IAKRLPK     EREAFPI  P+A  SK  CC
Sbjct:    2 SQGKTCHFKLVLLGDTAVGKSCLVVRFVRDEFFEFQEPTIGAAFLTQTVGLEDGLTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNKDSFTGAKSWVKELQRRGDPNVVIALAGNKADLEA-RRKVEFEEAHQYAEDNDILHMETSAKTAVNVKDLFVAIAKRLPKNPPQPEREAFPITPPQASKSKSGCC 197          
BLAST of EWM25322.1 vs. NCBI_GenBank
Match: gi|1210517813|dbj|GAX23214.1| (Ras-related protein Rab-5C [Fistulifera solaris] >gi|1210530869|dbj|GAX10409.1| Ras-related protein Rab-5C [Fistulifera solaris])

HSP 1 Score: 302.368 bits (773), Expect = 9.710e-102
Identity = 156/204 (76.47%), Postives = 173/204 (84.80%), Query Frame = 0
Query:   30 MSSGGGSSSN--NRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQAVVLEDSTVKFEIWDTAGQERYRSLAPMYYRGASAAIVVYDITNAESFKGAKSWVKELQRRGDPSVIIALAGNKADLAGTRRKVDLKDAEEYARENGLLHFETSAKDAQNVKTLFVEIAKRLPKAVAPVEREAFPIVAPKASKRSCC 231
            M+S  G SS   +RV HFKLVLLGDTAVGKSCLVVRFVRDEFFE+QEPTIGAAFLTQ V L+D+ VKFEIWDTAGQERYRSLAPMYYRGASAAIVVYDITN +SF GAKSWVKELQRRGDP+V+IALAGNKADL G RRKV+ ++A  YA ENGLLH ETSAK++ NVK LFVEIAK+LPK     EREAFPI+  +  K+ CC
Sbjct:    1 MNSNIGPSSPAASRVHHFKLVLLGDTAVGKSCLVVRFVRDEFFEFQEPTIGAAFLTQTVQLDDAMVKFEIWDTAGQERYRSLAPMYYRGASAAIVVYDITNPDSFAGAKSWVKELQRRGDPNVVIALAGNKADLEG-RRKVEFEEAAAYAAENGLLHLETSAKNSNNVKALFVEIAKKLPKNPPQPEREAFPIMPQQPEKQGCC 203          
The following BLAST results are available for this feature:
BLAST of EWM25322.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107078|gb|EWM25322.1|3.764e-171100.00canine-like rab-type small g protein [Nannochlorop... [more]
gi|553186431|ref|XP_005854416.1|4.622e-15999.08Ras-related protein Rab-5C, partial [Nannochlorops... [more]
gi|219111761|ref|XP_002177632.1|1.086e-10875.74predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1072224676|gb|OEU09425.1|9.688e-10877.32ras-related small GTPase Rab5 [Fragilariopsis cyli... [more]
gi|298705900|emb|CBJ29030.1|1.182e-10778.35Rab5, RAB family GTPase [Ectocarpus siliculosus][more]
gi|223995249|ref|XP_002287308.1|1.314e-10777.72canine-like rab-type small G protein [Thalassiosir... [more]
gi|397569787|gb|EJK46965.1|1.930e-10674.27hypothetical protein THAOC_34347 [Thalassiosira oc... [more]
gi|676394637|ref|XP_009040596.1|5.945e-10475.77hypothetical protein AURANDRAFT_55091 [Aureococcus... [more]
gi|695414947|ref|XP_009526435.1|5.262e-10276.65hypothetical protein PHYSODRAFT_346157 [Phytophtho... [more]
gi|1210517813|dbj|GAX23214.1|9.710e-10276.47Ras-related protein Rab-5C [Fistulifera solaris] >... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5364rna5364Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications