EWM25322.1, cds5351 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25322.1 vs. NCBI_GenBank
Match: gi|585107078|gb|EWM25322.1| (canine-like rab-type small g protein [Nannochloropsis gaditana]) HSP 1 Score: 479.174 bits (1232), Expect = 3.764e-171 Identity = 231/231 (100.00%), Postives = 231/231 (100.00%), Query Frame = 0
Query: 1 MLSCEEEAKLPPSTTTQLHPQESRDDFRTMSSGGGSSSNNRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQAVVLEDSTVKFEIWDTAGQERYRSLAPMYYRGASAAIVVYDITNAESFKGAKSWVKELQRRGDPSVIIALAGNKADLAGTRRKVDLKDAEEYARENGLLHFETSAKDAQNVKTLFVEIAKRLPKAVAPVEREAFPIVAPKASKRSCC 231
MLSCEEEAKLPPSTTTQLHPQESRDDFRTMSSGGGSSSNNRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQAVVLEDSTVKFEIWDTAGQERYRSLAPMYYRGASAAIVVYDITNAESFKGAKSWVKELQRRGDPSVIIALAGNKADLAGTRRKVDLKDAEEYARENGLLHFETSAKDAQNVKTLFVEIAKRLPKAVAPVEREAFPIVAPKASKRSCC
Sbjct: 1 MLSCEEEAKLPPSTTTQLHPQESRDDFRTMSSGGGSSSNNRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQAVVLEDSTVKFEIWDTAGQERYRSLAPMYYRGASAAIVVYDITNAESFKGAKSWVKELQRRGDPSVIIALAGNKADLAGTRRKVDLKDAEEYARENGLLHFETSAKDAQNVKTLFVEIAKRLPKAVAPVEREAFPIVAPKASKRSCC 231
BLAST of EWM25322.1 vs. NCBI_GenBank
Match: gi|553186431|ref|XP_005854416.1| (Ras-related protein Rab-5C, partial [Nannochloropsis gaditana CCMP526] >gi|422294642|gb|EKU21942.1| Ras-related protein Rab-5C, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 449.514 bits (1155), Expect = 4.622e-159 Identity = 216/218 (99.08%), Postives = 218/218 (100.00%), Query Frame = 0
Query: 14 TTTQLHPQESRDDFRTMSSGGGSSSNNRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQAVVLEDSTVKFEIWDTAGQERYRSLAPMYYRGASAAIVVYDITNAESFKGAKSWVKELQRRGDPSVIIALAGNKADLAGTRRKVDLKDAEEYARENGLLHFETSAKDAQNVKTLFVEIAKRLPKAVAPVEREAFPIVAPKASKRSCC 231
TTTQLHPQE+RDDFRTM+SGGGSSSNNRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQAVVLEDSTVKFEIWDTAGQERYRSLAPMYYRGASAAIVVYDITNAESFKGAKSWVKELQRRGDPSVIIALAGNKADLAGTRRKVDLKDAEEYARENGLLHFETSAKDAQNVKTLFVEIAKRLPKAVAPVEREAFPIVAPKASKRSCC
Sbjct: 44 TTTQLHPQETRDDFRTMTSGGGSSSNNRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQAVVLEDSTVKFEIWDTAGQERYRSLAPMYYRGASAAIVVYDITNAESFKGAKSWVKELQRRGDPSVIIALAGNKADLAGTRRKVDLKDAEEYARENGLLHFETSAKDAQNVKTLFVEIAKRLPKAVAPVEREAFPIVAPKASKRSCC 261
BLAST of EWM25322.1 vs. NCBI_GenBank
Match: gi|219111761|ref|XP_002177632.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217410517|gb|EEC50446.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 320.087 bits (819), Expect = 1.086e-108 Identity = 153/202 (75.74%), Postives = 175/202 (86.63%), Query Frame = 0
Query: 30 MSSGGGSSSNNRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQAVVLEDSTVKFEIWDTAGQERYRSLAPMYYRGASAAIVVYDITNAESFKGAKSWVKELQRRGDPSVIIALAGNKADLAGTRRKVDLKDAEEYARENGLLHFETSAKDAQNVKTLFVEIAKRLPKAVAPVEREAFPIVAPKASKRSCC 231
M++ GS++N RV HFKLVLLGDTAVGKSCLVVRFVRDEFFE+QEPTIGAAFLTQ V L+D+TVKFEIWDTAGQERYRSLAPMYYRGASAAIVVYDITN +SF GAKSWVKELQRRGDP+V+IALAGNKADL TRR V+ ++A YA+ENG+LH ETSAK+A NVK+LF+EIAK LPK E+EAFPI+ + R+CC
Sbjct: 1 MANHPGSAANARVHHFKLVLLGDTAVGKSCLVVRFVRDEFFEFQEPTIGAAFLTQTVQLDDATVKFEIWDTAGQERYRSLAPMYYRGASAAIVVYDITNPDSFTGAKSWVKELQRRGDPNVVIALAGNKADLE-TRRAVEFEEANAYAQENGILHLETSAKNANNVKSLFIEIAKTLPKNAPQPEKEAFPILQQQQETRNCC 201
BLAST of EWM25322.1 vs. NCBI_GenBank
Match: gi|1072224676|gb|OEU09425.1| (ras-related small GTPase Rab5 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 317.39 bits (812), Expect = 9.688e-108 Identity = 150/194 (77.32%), Postives = 172/194 (88.66%), Query Frame = 0
Query: 38 SNNRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQAVVLEDSTVKFEIWDTAGQERYRSLAPMYYRGASAAIVVYDITNAESFKGAKSWVKELQRRGDPSVIIALAGNKADLAGTRRKVDLKDAEEYARENGLLHFETSAKDAQNVKTLFVEIAKRLPKAVAPVEREAFPIVAPKASKRSCC 231
S++RV HFKLVLLGDTAVGKSCLVVRFVRDEFFE+QEPTIGAAFLTQ V L++STVKFEIWDTAGQERYRSLAPMYYRGA+AAI+VYDITN +SF GAKSWVKELQRRGDP+V+IALAGNKADL +RRKV+ ++A+ YA ENG+LH ETSAK+A NVK LFVE+AK+LPK EREAFP+ AP+ R+CC
Sbjct: 2 SSSRVHHFKLVLLGDTAVGKSCLVVRFVRDEFFEFQEPTIGAAFLTQTVQLDESTVKFEIWDTAGQERYRSLAPMYYRGAAAAIIVYDITNPDSFTGAKSWVKELQRRGDPNVVIALAGNKADLE-SRRKVEFEEAQSYAEENGILHLETSAKNANNVKALFVELAKKLPKNAPQPEREAFPLAAPQNDNRNCC 194
BLAST of EWM25322.1 vs. NCBI_GenBank
Match: gi|298705900|emb|CBJ29030.1| (Rab5, RAB family GTPase [Ectocarpus siliculosus]) HSP 1 Score: 317.005 bits (811), Expect = 1.182e-107 Identity = 152/194 (78.35%), Postives = 171/194 (88.14%), Query Frame = 0
Query: 38 SNNRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQAVVLEDSTVKFEIWDTAGQERYRSLAPMYYRGASAAIVVYDITNAESFKGAKSWVKELQRRGDPSVIIALAGNKADLAGTRRKVDLKDAEEYARENGLLHFETSAKDAQNVKTLFVEIAKRLPKAVAPVEREAFPIVAPKASKRSCC 231
S+ RVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQ V L+D+TVKFEIWDTAGQERYRSLAPMYYRGA+AAIVVYD+TN ESF GAKSWVKELQRRGDP+VIIALAGNKADL RR+V ++A YA +NGL+H ETSAK AQNVK++FVEIA++LPKA EREAFPI+ P+ ++S C
Sbjct: 2 SSGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQKVQLDDATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNKESFNGAKSWVKELQRRGDPNVIIALAGNKADLE-HRRQVQSEEARLYAEDNGLIHMETSAKSAQNVKSIFVEIAQKLPKATVQPEREAFPIMRPRTEQKSGC 194
BLAST of EWM25322.1 vs. NCBI_GenBank
Match: gi|223995249|ref|XP_002287308.1| (canine-like rab-type small G protein [Thalassiosira pseudonana CCMP1335] >gi|220976424|gb|EED94751.1| canine-like rab-type small G protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 317.005 bits (811), Expect = 1.314e-107 Identity = 150/193 (77.72%), Postives = 168/193 (87.05%), Query Frame = 0
Query: 39 NNRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQAVVLEDSTVKFEIWDTAGQERYRSLAPMYYRGASAAIVVYDITNAESFKGAKSWVKELQRRGDPSVIIALAGNKADLAGTRRKVDLKDAEEYARENGLLHFETSAKDAQNVKTLFVEIAKRLPKAVAPVEREAFPIVAPKASKRSCC 231
+NRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFE+QEPTIGAAFLTQ V L+D+TVKFEIWDTAGQERYRSLAPMYYRGA+AAIVVYDITN +SF GAKSWVKELQRRGD V+IA+AGNKADL RR+VD ++A YA ENG+LH ETSAK+A NVK LFVEIA+RLPK+ +REAFPI+ K R+CC
Sbjct: 2 SNRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEFQEPTIGAAFLTQTVALDDATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITNPDSFAGAKSWVKELQRRGDQDVVIAMAGNKADLEA-RRQVDFEEANAYAEENGILHMETSAKNANNVKALFVEIARRLPKSTQQPDREAFPIMPQKQESRNCC 193
BLAST of EWM25322.1 vs. NCBI_GenBank
Match: gi|397569787|gb|EJK46965.1| (hypothetical protein THAOC_34347 [Thalassiosira oceanica]) HSP 1 Score: 314.309 bits (804), Expect = 1.930e-106 Identity = 153/206 (74.27%), Postives = 171/206 (83.01%), Query Frame = 0
Query: 38 SNNRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQAVVLEDSTVKFEIWDTAGQERYRSLAPMYYRGASAAIVVYDITNAESFKGAKSWVKELQRRGDPSVIIAL------------AGNKADLAGTRRKVDLKDAEEYARENGLLHFETSAKDAQNVKTLFVEIAKRLPKAVAPVEREAFPIVAPKASKRSCC 231
SN+RVCHFKLVLLGDTAVGKSCLVVRFVRDEFFE+QEPTIGAAFLTQ V L+D+TVKFEIWDTAGQERYRSLAPMYYRGA+AAI+VYDITN +SF GAKSWVKELQRRGD +V+IA+ AGNKADL RRKVD +A +YA ENG+LH ETSAK+A NVK+LFVEIAK+LPKA +REAFPI+ K RSCC
Sbjct: 2 SNSRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEFQEPTIGAAFLTQTVALDDATVKFEIWDTAGQERYRSLAPMYYRGAAAAIIVYDITNPDSFAGAKSWVKELQRRGDQNVVIAMLTGSESDLITRQAGNKADLEA-RRKVDFNEANDYAEENGILHMETSAKNANNVKSLFVEIAKKLPKAQQQPDREAFPILPQKQESRSCC 206
BLAST of EWM25322.1 vs. NCBI_GenBank
Match: gi|676394637|ref|XP_009040596.1| (hypothetical protein AURANDRAFT_55091 [Aureococcus anophagefferens] >gi|323448788|gb|EGB04682.1| hypothetical protein AURANDRAFT_55091 [Aureococcus anophagefferens]) HSP 1 Score: 307.76 bits (787), Expect = 5.945e-104 Identity = 147/194 (75.77%), Postives = 170/194 (87.63%), Query Frame = 0
Query: 38 SNNRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQAVVLEDSTVKFEIWDTAGQERYRSLAPMYYRGASAAIVVYDITNAESFKGAKSWVKELQRRGDPSVIIALAGNKADLAGTRRKVDLKDAEEYARENGLLHFETSAKDAQNVKTLFVEIAKRLPKAVAPVEREAFPIVAPKASKRSCC 231
++ RVCHFKLVLLGDTAVGKSCLVVRFVRDEFFE+QEPTIGAAFLTQ+V LE++TVKFEIWDTAGQERYRSLAPMYYRGA+AAIVVYDITN ESF GAKSWVKELQRRGDP+VIIALAGNKADL RR V+ ++A++Y+ ENG+LH ETSAK+A +VK LF EIA++LPK ER+AFPI+ PK ++ C
Sbjct: 2 ASGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEFQEPTIGAAFLTQSVNLENATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITNKESFNGAKSWVKELQRRGDPNVIIALAGNKADLQNKRR-VESEEAKQYSEENGILHMETSAKNATHVKDLFQEIARKLPKTPPQPERDAFPIIPPKHNENKVC 194
BLAST of EWM25322.1 vs. NCBI_GenBank
Match: gi|695414947|ref|XP_009526435.1| (hypothetical protein PHYSODRAFT_346157 [Phytophthora sojae] >gi|348677560|gb|EGZ17377.1| hypothetical protein PHYSODRAFT_346157 [Phytophthora sojae] >gi|566022578|gb|ETI45489.1| hypothetical protein F443_09921 [Phytophthora parasitica P1569] >gi|567959877|gb|ETK85441.1| hypothetical protein L915_09718 [Phytophthora parasitica] >gi|567988610|gb|ETL38885.1| hypothetical protein L916_09622 [Phytophthora parasitica] >gi|568017813|gb|ETL91990.1| hypothetical protein L917_09545 [Phytophthora parasitica] >gi|568048229|gb|ETM45288.1| hypothetical protein L914_09588 [Phytophthora parasitica] >gi|570326200|gb|ETO74148.1| hypothetical protein F444_10016 [Phytophthora parasitica P1976] >gi|570950056|gb|ETP15313.1| hypothetical protein F441_09870 [Phytophthora parasitica CJ01A1] >gi|570983590|gb|ETP43389.1| hypothetical protein F442_09824 [Phytophthora parasitica P10297]) HSP 1 Score: 302.753 bits (774), Expect = 5.262e-102 Identity = 151/197 (76.65%), Postives = 165/197 (83.76%), Query Frame = 0
Query: 38 SNNRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQAVVLEDS-TVKFEIWDTAGQERYRSLAPMYYRGASAAIVVYDITNAESFKGAKSWVKELQRRGDPSVIIALAGNKADLAGTRRKVDLKDAEEYARENGLLHFETSAKDAQNVKTLFVEIAKRLPKAVAPVEREAFPIVAPKA--SKRSCC 231
S + CHFKLVLLGDTAVGKSCLVVRFVRDEFFE+QEPTIGAAFLTQ V LED TVKFEIWDTAGQERYRSLAPMYYRGA+AAIVVYD+TN +SF GAKSWVKELQRRGDP+V+IALAGNKADL RRKV+ ++A +YA +N +LH ETSAK A NVK LFV IAKRLPK EREAFPI P+A SK CC
Sbjct: 2 SQGKTCHFKLVLLGDTAVGKSCLVVRFVRDEFFEFQEPTIGAAFLTQTVGLEDGLTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNKDSFTGAKSWVKELQRRGDPNVVIALAGNKADLEA-RRKVEFEEAHQYAEDNDILHMETSAKTAVNVKDLFVAIAKRLPKNPPQPEREAFPITPPQASKSKSGCC 197
BLAST of EWM25322.1 vs. NCBI_GenBank
Match: gi|1210517813|dbj|GAX23214.1| (Ras-related protein Rab-5C [Fistulifera solaris] >gi|1210530869|dbj|GAX10409.1| Ras-related protein Rab-5C [Fistulifera solaris]) HSP 1 Score: 302.368 bits (773), Expect = 9.710e-102 Identity = 156/204 (76.47%), Postives = 173/204 (84.80%), Query Frame = 0
Query: 30 MSSGGGSSSN--NRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQAVVLEDSTVKFEIWDTAGQERYRSLAPMYYRGASAAIVVYDITNAESFKGAKSWVKELQRRGDPSVIIALAGNKADLAGTRRKVDLKDAEEYARENGLLHFETSAKDAQNVKTLFVEIAKRLPKAVAPVEREAFPIVAPKASKRSCC 231
M+S G SS +RV HFKLVLLGDTAVGKSCLVVRFVRDEFFE+QEPTIGAAFLTQ V L+D+ VKFEIWDTAGQERYRSLAPMYYRGASAAIVVYDITN +SF GAKSWVKELQRRGDP+V+IALAGNKADL G RRKV+ ++A YA ENGLLH ETSAK++ NVK LFVEIAK+LPK EREAFPI+ + K+ CC
Sbjct: 1 MNSNIGPSSPAASRVHHFKLVLLGDTAVGKSCLVVRFVRDEFFEFQEPTIGAAFLTQTVQLDDAMVKFEIWDTAGQERYRSLAPMYYRGASAAIVVYDITNPDSFAGAKSWVKELQRRGDPNVVIALAGNKADLEG-RRKVEFEEAAAYAAENGLLHLETSAKNSNNVKALFVEIAKKLPKNPPQPEREAFPIMPQQPEKQGCC 203 The following BLAST results are available for this feature:
BLAST of EWM25322.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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