rna5358, rna5358 (mRNA) Nannochloropsis gaditana

Overview
Namerna5358
Unique Namerna5358
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length387
Alignment locationCM002465.1:797328..798409 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101034g2.8311.mrna
Orig protein idgnl|cribi|Naga_101034g2.8311
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:797328..798409 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101034g2gene5179Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25329.1cds5345Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5358rna5358-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5358 ID=rna5358|Name=rna5358|organism=Nannochloropsis gaditana|type=mRNA|length=387bp
ATGGCTGGCCGATCGGACCAACGGCGGCGCTTCAACGTGAAGAATACCCA
TCATAATAAAACTTTCGTATTTCAAGTATGCTATGCATTTCGATGGCAAA
ATGAAGCTCTGCCTTTTGGTAGACTTAGCCTCGCAGCCAAGTATTGGATA
AGCATGCCATACATTTCCCCGGATGGAGCAATATATCACATTGCCCTGCA
GCACTTTGCTAAATTGGATCACAACGAAGTATGGGATGCATATGTCCTGC
TTAATGGTAAAAGTGTATCGCGGAAAGGTTATGTGTGGATAGCAAGCAAT
ATGTTGAACGATTTGATGTCTGTTGAGCAGATCCATAATTTTGTAAGCCA
TGTCAAAAAACAAAAGGAGATAGGATACGCGAAGTGA
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protein sequence of rna5358

>rna5358-protein ID=rna5358-protein|Name=rna5358|organism=Nannochloropsis gaditana|type=polypeptide|length=117bp
DKGSLWPDVTLVSPHEVAPVQHAVVGQPYKVLLENFAMKGDVVVELFQGT
EKKGVTVATVPGGIAPGEVREVSWTAPEPLDGVSGNRAYLRAYHAGMPAI
YSESDLFDLLPSSVLEN
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mRNA from alignment at CM002465.1:797328..798409-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5358 ID=rna5358|Name=rna5358|organism=Nannochloropsis gaditana|type=mRNA|length=1082bp|location=Sequence derived from alignment at CM002465.1:797328..798409- (Nannochloropsis gaditana)
TGACAAGGGGTCTCTGTGGCCCGACGTGACGCTTGTCTCACCGCATGAGG
TGGCACCCGTCCAGCACGCTGTGGTCGGCCAGCCGTACAAGGTGCTTTTA
GAGAACTTTGCGATGAAGGGAGACGTGGTCGTGGAGCTCTTCCAGGGCAC
TGAGAAGAAGGGCGTGACTGTCGCTACGGTGCCGGGCGGGATCGCCCCCG
GCGAGGTGCGAGAGGTGTCGTGGACGGCTCCTGAGCCGCTTGATGGAGTG
TCTGGGAACCGAGCCTACCTGCGCGCGTACCACGCGGGCATGCCGGCGAT
CTATTCCGAGAGTGACCTGTTTGACTTGTTGCCGTCGTCTGTGCTGGAGA
ACTAAGCTTGAAAGGTGCCGTTTTCCTCGATCTGCCGTCAAGATTGTAGC
TGTTTTGAAAAAGATTACGCGATGTTTTCAATAAATTATAGGTAAGAATC
TCTTTTTAAGAGAGCATGGCTTGGGACTCCTTTTTTAATCTCACTGGCCG
GCTTAGTAATGTATGGAAATGGAAAGTCTGCATACGTTCAAGGTCAAGAA
CTGCGATGTATTGAGTGAAAATGCCCTGACCTTTTTTTAATTTCTCATGT
CCTGCATTTCGTATCCACCTCTTCCTCACAGACACCATAATAATACTGGG
TGGTCAAAAAAACAGAAAGGGATCATGGGGGAAAGTGTCTTAAGAAATAG
GACAATAGTTCAGAGCGCTGTGCAATTTTTGACAGGCTCCATGAGCAAAG
TAAGGGTATAAGTGAGAATTATGTTGGAGGAAACAGTAAGAAGTACAAAA
GCAAAAAAGCAAGAGACGGTGGATAAAAGCTAGATTATTTTCGAAATGTT
TGTATTGTGACTTATCATTGCTAGCGTTTTACTGAGGCAATAATTTCATT
CAGGTCGGTCTTCTGCCAAATGACGATGTTGTATTGATGCCTCATTGTGC
CTTGAACACAATTATTCCTCCTCGCGAGTCCCTCTGAAACTTTTTTGTTT
ATCTCTGTAAATTACCTGACTTCAGCCTGCACAAGCTTGTTCAGGTATAC
CCATTCATGTGTATATGTTAAGGTAACTTTGT
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Coding sequence (CDS) from alignment at CM002465.1:797328..798409-

>rna5358 ID=rna5358|Name=rna5358|organism=Nannochloropsis gaditana|type=CDS|length=354bp|location=Sequence derived from alignment at CM002465.1:797328..798409- (Nannochloropsis gaditana)
GACAAGGGGTCTCTGTGGCCCGACGTGACGCTTGTCTCACCGCATGAGGT
GGCACCCGTCCAGCACGCTGTGGTCGGCCAGCCGTACAAGGTGCTTTTAG
AGAACTTTGCGATGAAGGGAGACGTGGTCGTGGAGCTCTTCCAGGGCACT
GAGAAGAAGGGCGTGACTGTCGCTACGGTGCCGGGCGGGATCGCCCCCGG
CGAGGTGCGAGAGGTGTCGTGGACGGCTCCTGAGCCGCTTGATGGAGTGT
CTGGGAACCGAGCCTACCTGCGCGCGTACCACGCGGGCATGCCGGCGATC
TATTCCGAGAGTGACCTGTTTGACTTGTTGCCGTCGTCTGTGCTGGAGAA
CTAA
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Synonyms
Publications