EWM25329.1, cds5345 (CDS) Nannochloropsis gaditana

Overview
NameEWM25329.1
Unique Namecds5345
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:798055..798408 -

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Properties
Property NameValue
Protein idEWM25329.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_101034g2.8311.mrna
GbkeyCDS
End range.
End range798408
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:798055..798408 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM25329.1 vs. NCBI_GenBank
Match: gi|585107087|gb|EWM25329.1| (hypothetical protein Naga_101034g2, partial [Nannochloropsis gaditana])

HSP 1 Score: 237.269 bits (604), Expect = 2.866e-79
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0
Query:    1 DKGSLWPDVTLVSPHEVAPVQHAVVGQPYKVLLENFAMKGDVVVELFQGTEKKGVTVATVPGGIAPGEVREVSWTAPEPLDGVSGNRAYLRAYHAGMPAIYSESDLFDLLPSSVLEN 117
            DKGSLWPDVTLVSPHEVAPVQHAVVGQPYKVLLENFAMKGDVVVELFQGTEKKGVTVATVPGGIAPGEVREVSWTAPEPLDGVSGNRAYLRAYHAGMPAIYSESDLFDLLPSSVLEN
Sbjct:    1 DKGSLWPDVTLVSPHEVAPVQHAVVGQPYKVLLENFAMKGDVVVELFQGTEKKGVTVATVPGGIAPGEVREVSWTAPEPLDGVSGNRAYLRAYHAGMPAIYSESDLFDLLPSSVLEN 117          
BLAST of EWM25329.1 vs. NCBI_GenBank
Match: gi|553180540|ref|XP_005853420.1| (hypothetical protein NGA_0438800, partial [Nannochloropsis gaditana CCMP526] >gi|422295640|gb|EKU22939.1| hypothetical protein NGA_0438800, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 233.032 bits (593), Expect = 3.986e-77
Identity = 114/117 (97.44%), Postives = 115/117 (98.29%), Query Frame = 0
Query:    1 DKGSLWPDVTLVSPHEVAPVQHAVVGQPYKVLLENFAMKGDVVVELFQGTEKKGVTVATVPGGIAPGEVREVSWTAPEPLDGVSGNRAYLRAYHAGMPAIYSESDLFDLLPSSVLEN 117
            D GSLWPDVTLVSPHEVAPVQHAVVGQPY VLLENFAMKG+VVVELFQGTEKKGVTVATVPGGIAPGEVREVSWTAPEPLDGVSGNRAYLRAYHAGMPAIYSESDLFDLLPSSVLEN
Sbjct:   31 DTGSLWPDVTLVSPHEVAPVQHAVVGQPYTVLLENFAMKGNVVVELFQGTEKKGVTVATVPGGIAPGEVREVSWTAPEPLDGVSGNRAYLRAYHAGMPAIYSESDLFDLLPSSVLEN 147          
BLAST of EWM25329.1 vs. NCBI_GenBank
Match: gi|553180544|ref|XP_005853421.1| (hypothetical protein NGA_0438900, partial [Nannochloropsis gaditana CCMP526] >gi|422295641|gb|EKU22940.1| hypothetical protein NGA_0438900, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 113.235 bits (282), Expect = 7.857e-27
Identity = 53/54 (98.15%), Postives = 53/54 (98.15%), Query Frame = 0
Query:    1 DKGSLWPDVTLVSPHEVAPVQHAVVGQPYKVLLENFAMKGDVVVELFQGTEKKG 54
            DKGSLWPDVTLVSPHEVAPVQHAVVGQPY VLLENFAMKGDVVVELFQGTEKKG
Sbjct: 1056 DKGSLWPDVTLVSPHEVAPVQHAVVGQPYTVLLENFAMKGDVVVELFQGTEKKG 1109          
BLAST of EWM25329.1 vs. NCBI_GenBank
Match: gi|585104537|gb|EWM23471.1| (hypothetical protein Naga_100428g3 [Nannochloropsis gaditana])

HSP 1 Score: 61.2326 bits (147), Expect = 1.317e-8
Identity = 36/107 (33.64%), Postives = 57/107 (53.27%), Query Frame = 0
Query:    3 GSLWPDVTLVSPHEVAPVQHAVVGQPYKVLLENFAMKGDVVVELFQGTEKKGVTVATVPGGIAPGEVREVSWTAPEPLDGVSGNRAYLRAYHAGMPAIYSESDLFDL 109
            GSL PDVT+     + P +  V G+ YKV ++NF     ++++L  G E+ G  V T+      G + E++WTAP  +D  S  + YL+A  A  P ++  S +F  
Sbjct:  576 GSLGPDVTIADGVSITPPRTLVPGETYKVYVQNFPAGTKIILKLLAGLEQDGPVVDTIESFDDDG-ISELAWTAPRDVD-FSPKKYYLQATPAAFPVLFGNSQVFSF 680          
The following BLAST results are available for this feature:
BLAST of EWM25329.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 4
Match NameE-valueIdentityDescription
gi|585107087|gb|EWM25329.1|2.866e-79100.00hypothetical protein Naga_101034g2, partial [Nanno... [more]
gi|553180540|ref|XP_005853420.1|3.986e-7797.44hypothetical protein NGA_0438800, partial [Nannoch... [more]
gi|553180544|ref|XP_005853421.1|7.857e-2798.15hypothetical protein NGA_0438900, partial [Nannoch... [more]
gi|585104537|gb|EWM23471.1|1.317e-833.64hypothetical protein Naga_100428g3 [Nannochloropsi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5358rna5358Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications