EWM25329.1, cds5345 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25329.1 vs. NCBI_GenBank
Match: gi|585107087|gb|EWM25329.1| (hypothetical protein Naga_101034g2, partial [Nannochloropsis gaditana]) HSP 1 Score: 237.269 bits (604), Expect = 2.866e-79 Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0
Query: 1 DKGSLWPDVTLVSPHEVAPVQHAVVGQPYKVLLENFAMKGDVVVELFQGTEKKGVTVATVPGGIAPGEVREVSWTAPEPLDGVSGNRAYLRAYHAGMPAIYSESDLFDLLPSSVLEN 117
DKGSLWPDVTLVSPHEVAPVQHAVVGQPYKVLLENFAMKGDVVVELFQGTEKKGVTVATVPGGIAPGEVREVSWTAPEPLDGVSGNRAYLRAYHAGMPAIYSESDLFDLLPSSVLEN
Sbjct: 1 DKGSLWPDVTLVSPHEVAPVQHAVVGQPYKVLLENFAMKGDVVVELFQGTEKKGVTVATVPGGIAPGEVREVSWTAPEPLDGVSGNRAYLRAYHAGMPAIYSESDLFDLLPSSVLEN 117
BLAST of EWM25329.1 vs. NCBI_GenBank
Match: gi|553180540|ref|XP_005853420.1| (hypothetical protein NGA_0438800, partial [Nannochloropsis gaditana CCMP526] >gi|422295640|gb|EKU22939.1| hypothetical protein NGA_0438800, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 233.032 bits (593), Expect = 3.986e-77 Identity = 114/117 (97.44%), Postives = 115/117 (98.29%), Query Frame = 0
Query: 1 DKGSLWPDVTLVSPHEVAPVQHAVVGQPYKVLLENFAMKGDVVVELFQGTEKKGVTVATVPGGIAPGEVREVSWTAPEPLDGVSGNRAYLRAYHAGMPAIYSESDLFDLLPSSVLEN 117
D GSLWPDVTLVSPHEVAPVQHAVVGQPY VLLENFAMKG+VVVELFQGTEKKGVTVATVPGGIAPGEVREVSWTAPEPLDGVSGNRAYLRAYHAGMPAIYSESDLFDLLPSSVLEN
Sbjct: 31 DTGSLWPDVTLVSPHEVAPVQHAVVGQPYTVLLENFAMKGNVVVELFQGTEKKGVTVATVPGGIAPGEVREVSWTAPEPLDGVSGNRAYLRAYHAGMPAIYSESDLFDLLPSSVLEN 147
BLAST of EWM25329.1 vs. NCBI_GenBank
Match: gi|553180544|ref|XP_005853421.1| (hypothetical protein NGA_0438900, partial [Nannochloropsis gaditana CCMP526] >gi|422295641|gb|EKU22940.1| hypothetical protein NGA_0438900, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 113.235 bits (282), Expect = 7.857e-27 Identity = 53/54 (98.15%), Postives = 53/54 (98.15%), Query Frame = 0
Query: 1 DKGSLWPDVTLVSPHEVAPVQHAVVGQPYKVLLENFAMKGDVVVELFQGTEKKG 54
DKGSLWPDVTLVSPHEVAPVQHAVVGQPY VLLENFAMKGDVVVELFQGTEKKG
Sbjct: 1056 DKGSLWPDVTLVSPHEVAPVQHAVVGQPYTVLLENFAMKGDVVVELFQGTEKKG 1109
BLAST of EWM25329.1 vs. NCBI_GenBank
Match: gi|585104537|gb|EWM23471.1| (hypothetical protein Naga_100428g3 [Nannochloropsis gaditana]) HSP 1 Score: 61.2326 bits (147), Expect = 1.317e-8 Identity = 36/107 (33.64%), Postives = 57/107 (53.27%), Query Frame = 0
Query: 3 GSLWPDVTLVSPHEVAPVQHAVVGQPYKVLLENFAMKGDVVVELFQGTEKKGVTVATVPGGIAPGEVREVSWTAPEPLDGVSGNRAYLRAYHAGMPAIYSESDLFDL 109
GSL PDVT+ + P + V G+ YKV ++NF ++++L G E+ G V T+ G + E++WTAP +D S + YL+A A P ++ S +F
Sbjct: 576 GSLGPDVTIADGVSITPPRTLVPGETYKVYVQNFPAGTKIILKLLAGLEQDGPVVDTIESFDDDG-ISELAWTAPRDVD-FSPKKYYLQATPAAFPVLFGNSQVFSF 680 The following BLAST results are available for this feature:
BLAST of EWM25329.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 4
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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